New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 176399	NA (NA)	27 (0.620) +CGAAA	9/238	NT	34.7%	intergenic (+43/‑420)	PP_5SA/PP_16SB	5S ribosomal RNA/16S ribosomal RNA
	?	NC_002947	= 182013	53 (1.170)					intergenic (+2/+63)	PP_5SB/PP_0160	5S ribosomal RNA/ferrioxamine receptor

TTGGAACCACCTGATCCCATCCCGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTAAGTAGAAGCTCATGCTTCGTCCTGGTAAGCCGCAAGGTCAGCCAGTTGCAGTAAAAAGGTGGTTGACAGTGTTTTTGAATGCTGTATTATTCACCTCCCGCGACGAGAGATCGAAGCGAGTTAAGTGTCTGAA  >  NC_002947/176257‑176538                                                                                                                                               |                                                                                                                                            ttGGAACCACCTGATCCCATCCCGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTaa                                                                                                                                      <  2:78685/150‑1 (MQ=31) ttGGAACCACCTGATCCCATCCCGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTaa                                                                                                                                      <  2:78255/150‑1 (MQ=31)   ggAACCACCTGATCCCATCCCGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTAAGt                                                                                                                                    <  2:1095425/150‑1 (MQ=32)    gAACCACCTGATCCCATCCCGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTAAGTa                                                                                                                                   >  2:356935/1‑150 (MQ=32)     aaCCACCTGATCCCATCCCGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTAAGTAg                                                                                                                                  >  2:1178382/1‑150 (MQ=32)      accaccTGATCCCATCCCGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTAAGTAGa                                                                                                                                 >  1:944037/1‑150 (MQ=33)            tGATCCCATCCCGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCGATCTGCGCATGCAGGTAGGGGTTTTGTCTTTAAGTAGAAGCTCa                                                                                                                           >  1:735033/1‑150 (MQ=38)                  catcccGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTAAGTAGAAGCTCATGCTTc                                                                                                                     <  1:194696/150‑1 (MQ=255)                        gAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTAAGTAGAAGCTCATGCTTCGTCCTg                                                                                                               <  1:545411/150‑1 (MQ=255)                          aCTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTAAGTAGAAGCTCATGCTTCGTCCTGGt                                                                                                             <  1:101691/150‑1 (MQ=255)                            tCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTAAGTAGAAGCTCATGCTTCGTCCTGGTaa                                                                                                           <  2:1059226/150‑1 (MQ=255)                               gtagtGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGTAAAACCCCTATCTGCGCATGACGAAAAGGGTGTTGTCGTTAAGTAGAAGCTCATGCTTCGTCCTGGTAAGcc                                                                                                        >  1:1173634/1‑150 (MQ=17)                                 agtGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTAAGTAGAAGCTCATGCTTCGTCCTg                                                                                                               >  2:1203974/1‑141 (MQ=255)                                 agtGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTAAGTAGAAGCTCATGCTTCGTCCTg                                                                                                               <  1:1203974/141‑1 (MQ=255)                                  gtGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTAAGTAGAAGCTCATGCTTCGTCCTGGTAAGCCGCa                                                                                                     >  2:514596/1‑150 (MQ=255)                                   tGAAACGCTGCCTCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCAAACTGCAAAAAGGTGACTCAGAACCCCTATCTCCCCATGCAGGTAGGGGTTTTGTATTTACGTCTTAGCTCATGCTGCGTCCTGGTAAGCCGCaa                                                                                                    <  1:1178382/150‑1 (MQ=9)                                     aaaCGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTAAGTAGAAGCTCATGCTTCGTCCTGGTAAGCCGCAAgg                                                                                                  >  1:367907/1‑150 (MQ=255)                                          aTGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTCCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTAAGTAGAAGCTCATGCTTCGTCCTGGTAAGCCGCAAGGTCAGc                                                                                             <  1:1043338/150‑1 (MQ=255)                                              aTCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTAAGTAGAAGCTCATGCTTCGTCCTGGTAAGCCGCAAGGTCAGCCAGt                                                                                         >  1:1094680/1‑150 (MQ=255)                                              aTCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTAAGTAGAAGCTCATGCTTCGTCCTGGTAAGCCGCAAGGTCAGCCAGt                                                                                         >  1:736106/1‑150 (MQ=255)                                                 gCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAACACCCCTGTCTGCGCATGCAGGTAGGGGTTTTGTCTTTAAGTAGAAGCTCATGCTTCGTCCTGGTAAGCCGCAAGGTCAGCCAGTTGc                                                                                      <  1:514035/150‑1 (MQ=255)                                                  ccGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTAAGTAGAAGCTCATGCTTCGTCCTGGTAAGCCGCAAGGTCAGCCAGTTGCa                                                                                     <  1:96766/150‑1 (MQ=255)                                                         tAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTAAGTAGAAGCTCATGCTTCGTCCTGGTAAGCCGCAAGGTCAGCCAGTTGCATTaaaaa                                                                              <  1:106156/150‑1 (MQ=255)                                                          aGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTCCGAGTTTTGTCATTAATTAGAAGCTCATGCTTCGTCCTGGTAAGCCGCAAGGTCAGCCAGTTGCAGTAAAAAg                                                                             <  1:749918/150‑1 (MQ=21)                                                            tgtgGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTAAGTAGAAGCTCATGCTTCGTCCTGGTAAGCCGCAAGGTCAGCCAGTTGCAGTAAAAAggt                                                                           <  2:944037/150‑1 (MQ=255)                                                                gggTTTACCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTAAGTAGAAGCTCATGCTTCGTCCTGGTAAGCCGCAAGGTCAGCCAGTTGCAGTAAAAAGGTGGtt                                                                       <  1:356935/150‑1 (MQ=255)                                                                   tttCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTAAGTAGAAGCTCATGATTCGGGTTGGTAAGCCGCAAGGTCAGCCAGTTGCAGTAAAAAGGTGGTTGAc                                                                    >  1:379308/1‑150 (MQ=255)                                                                    ttCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTAAGTAGAAGCTCATGCTTCGTCCTGGTAAGCCGCAAGGTCAGCCAGTTGCAGTAAAAAGGTGGTTGACa                                                                   <  2:367907/150‑1 (MQ=255)                                                                               agagTAGGTCATCGTCACGATTCATATCGCAAAACCCCTATCTACTCATTCAGGTAGGGGTTTTGTCTTTAAGTAGAAGCTCATGCTTCGTCCTGGTAAGCCGCAAGGTCAGCCAGTTGCAGTAAAAAGGTGGTTGACAGTGTTTTTGaa                                                        <  2:735033/150‑1 (MQ=37)                                                                               agagTAGGTCATCGTCAAGCTTCATTTCGCAATACCTCTATCTGCTCATGCAGGTAGGGGTTTTGTCTTTAAGTAGAAGCTCATGCTTCGTCCTGGTAAGCCGCAAGGTCAGCCAGTTGCAGTAAAAAGGTGGTTGACAGTGTTTTTGaa                                                        <  2:379308/150‑1 (MQ=255)                                                                                    aGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTAAGTAGAAGCTCATGCTTCGTCCTGGTAAGCCGCAAGGTCAGCCAGTTGCAGTAAAAAGGTGGTTGACAGTGTTTTTGAATGCTg                                                   >  2:770435/1‑150 (MQ=255)                                                                                       tCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTAAGTAGAAGCTCATGCTTCGTCCTGGTAAGCCGCAAGGTCAGCCAGTTGCAGTAAAAAGGTGGTTGACAGTGTTTTTGAATGCTGtat                                                >  1:1127031/1‑150 (MQ=255)                                                                                       gcagcGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTAAGTAGAAGCTCATGCTTCGTCCTGGTAAGCCGCAAGGTCAGCCAGTTGCAGTAAAAAGGTGGTTGACAGTGTTTTTGAATGCTGtat                                                >  2:78056/5‑150 (MQ=255)                                                                                        cATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTAAGTAGAAGCTCATGCTTCGTCCTGGTAAGCCGCAAGGTCAGCCACTTGCAGTAAAAAGGTGGTTGACAGTGTTTTTGAATGCTGtatt                                               >  1:1161092/1‑150 (MQ=255)                                                                                         aTCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTAAGTAGAAGCTCATGCTTCGTCCTGGTAAGCCGCAAGGTCAGCCAGTTGCAGTAAAAAGGTGGTTGACAGTGTTTTTGAATGCTGtatta                                              <  2:1094680/150‑1 (MQ=255)                                                                                            gTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTAAGTAGAAGCTCATGCTTCGTCCTGGTAAGCCGCAAGGTCAGCCAGTTGCAGTAAAAAGGTGGTTGACAGTGTTTTTGAATGCTGTATTATTc                                           <  2:1127031/150‑1 (MQ=255)                                                                                                aGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTAAGTAGAAGCTCATGCTTCGTCCTGGTAAGCCGCAAGGTCAGCCAGTTGCAGTAAAAAGGTGGTTGACAGTGTTTTTGAATGCTGTATTATTCACCt                                       >  2:735174/1‑150 (MQ=255)                                                                                                      aTTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTAAGTAGAAGCTCATGCTTCGTCCTGGTAAGCCGCAAGGTCAGCCAGTTGCAGTAAAAAGGTGGTTGACAGTGTTTTTGAATGCTGTATTATTCACCTCCcgcg                                 >  1:398797/1‑150 (MQ=255)                                                                                                       tttCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTAAGTAGAAGCTCATGCTTCGTCCTGGTAAGCCGCAAGGTCAGCCAGTTGCAGTAAAAAGGTGGTTGACAGTGTTTTTGAATGCTGTATTATTCACCTCCCGcga                                >  1:120108/1‑150 (MQ=255)                                                                                                          cGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTAAGTAGAAGCTCATGCTTCGTCCTGGTAAGCCGCAAGGTCAGCCAGTTGCAGTAAAAAGGTGGTTGACAGTGTTTTTGAATGCTGTATTATTCACCTCCCGcgacga                             <  1:770435/150‑1 (MQ=255)                                                                                                             aaaaCCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTAAGTAGAAGCTCATGCTTCGTCCTGGTAAGCCGCAAGGTCAGCCAGTTGCAGTAAAAAGGTGGTTGACAGTGTTTTTGAATGCTGTATTATTCACCTCCcg                                   >  2:578091/1‑141 (MQ=255)                                                                                                             aaaaCCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTAAGTAGAAGCTCATGCTTCGTCCTGGTAAGCCGCAAGGTCAGCCAGTTGCAGTAAAAAGGTGGTTGACAGTGTTTTTGAATGCTGTATTATTCACCTCCcg                                   <  1:578091/141‑1 (MQ=255)                                                                                                                aCCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTAAGTAGAAGCTCATGCTTCGTCCTGGTAAGCCGCAAGGTCAGCCAGTTGCAGTAAAAAGGTGGTTGACAGTGTTTTTGAATGCTGTATTATTCACCTCCCGCGACGAGAGATc                       <  1:735174/150‑1 (MQ=255)                                                                                                                  cccTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTAAGTAGAAGCTCATGCTTCGTCCTGGTAAGCCGCAAg                                                                                                   <  2:1158704/72‑1 (MQ=255)                                                                                                                  cccTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTAAGTAGAAGCTCATGCTTCGTCCTGGTAAGCCGCAAg                                                                                                   >  1:1158704/1‑72 (MQ=255)                                                                                                                  cccTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTAAGTAGAAGCTCATGCTTCGTCCTGGTAAGCCGCAAGGTCAGCCAGTTGCAGTAAAAAGGTGGTTGACa                                                                   <  2:175471/104‑1 (MQ=255)                                                                                                                  cccTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTAAGTAGAAGCTCATGCTTCGTCCTGGTAAGCCGCAAGGTCAGCCAGTTGCAGTAAAAAGGTGGTTGACa                                                                   >  1:175471/1‑104 (MQ=255)                                                                                                                  cccTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTAAGTAGAAGCTCATGCTTCGTCCTGGTAAGCCGCAAGGTCAGCCAGTTGCAGTAAAAAGGTGGTTGACAGTGTTTTTGAATGCTGTattatt                                            <  2:116270/127‑1 (MQ=255)                                                                                                                  cccTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTAAGTAGAAGCTCATGCTTCGTCCTGGTAAGCCGCAAGGTCAGCCAGTTGCAGTAAAAAGGTGGTTGACAGTGTTTTTGAATGCTGTattatt                                            >  1:116270/1‑127 (MQ=255)                                                                                                                   ccTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTAAGTAGAAGCTCATGCTTCGTCCTGGTAAGCCGCAAGGTCAGCCAGTTGCAGTAAAAAGGTGGTTGACAGTGTTTTTGAATGCTGTATTATTCACCTCCCGCGACGAGAGATCGaa                    <  2:736106/150‑1 (MQ=255)                                                                                                                       tCTGCGCATGCAGGTAGGGGTTTTGTCTTTAAGTAGAAGCTCATGCTTCGTCCTGGTAAGCCGCAAGGTCAACCAGTTGCAGTAAAAAGGTGGTTGACAGTGTTTTTGAATGCTGTATTATTCACCTCCCGCGACGAGAGATCGAAGCGa                <  2:1173634/150‑1 (MQ=255)                                                                                                                                  aGGTAGGGGTTTTGTCTTTAAGTAGAAGCTCATGCTTCGTCCTGGTAAGCCGCAAGGTCAGCCAGTTGCAGTAAAAAGGTGGTTGACAGTGTTTTTGAATGCTGTATTATTCACCTCCCGCGACGAGAGATCGAAGCGAGTTAAGTGTCt     >  1:1031159/1‑150 (MQ=255)                                                                                                                                     tAGGGGTTTTGTCTTTAAGTAGAAGCTCATGCTTCGTCCTGGTAAGCCGCAAGGTCAGCCAGTTGCAGTAAAAAGGTGGTTGACAGTGTTTTTGAATGCTGTATTATTCACCTCCCGCGACGAGAGATCGAAGCGAGTTAAGTGTCTGaa  <  1:78056/150‑1 (MQ=255)                                                                                                                                          gTTTTGTCTTTAAGTAGAAGCTCATGCTTCGTCCTGGTAAGCCGCAAGGTCAGCCAGTTGCAg                                                                                    <  2:444069/63‑1 (MQ=255)                                                                                                                                          gTTTTGTCTTTAAGTAGAAGCTCATGCTTCGTCCTGGTAAGCCGCAAGGTCAGCCAGTTGCAg                                                                                    >  1:444069/1‑63 (MQ=255)                                                                                                                                               |                                                                                                                                            TTGGAACCACCTGATCCCATCCCGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTAAGTAGAAGCTCATGCTTCGTCCTGGTAAGCCGCAAGGTCAGCCAGTTGCAGTAAAAAGGTGGTTGACAGTGTTTTTGAATGCTGTATTATTCACCTCCCGCGACGAGAGATCGAAGCGAGTTAAGTGTCTGAA  >  NC_002947/176257‑176538

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.