New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1022041 =	38 (0.840)	5 (0.120)	5/234	NT	11.9%	intergenic (‑52/+40)	dppB/dppA‑I	dipeptide ABC transporter permease/dipeptide ABC transporter substrate‑binding protein
	?	NC_002947	1022070 =	38 (0.890)					intergenic (‑81/+11)	dppB/dppA‑I	dipeptide ABC transporter permease/dipeptide ABC transporter substrate‑binding protein

CCGGGGATCAGGCGTATGAGCGCGAAGGTCAGCAAGGTGATGCCGAAAAAGGTCGGTATCAGCAGGCCAAGGCGCCGGGCAATAAAACTCAACATTGTCGGGGTTACCTCATCAGGCCGTGGGGCGATCAGCCCGGTACGGCAGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAGTTGTTGTTGGTCAGAGGGTTGATCACGTAGCCCTCCACGTTGTCACGCATGGCGGTGAACATCTTTGGATGAGCCATGCTGATCC  >  NC_002947/1021895‑1022190                                                                                                                                                   |                                                                                                                                                       ccGGGGATCAGGCGTATGAGCGCGAAGGTCAGCAAGGTGATGCCGAAAAAGGTCGGTATCAGCAGGCCAAGGCGCCGGGCAATAAAACTCAACATTGTCGGGGTTACCTCATCAGGCCGTGGGGCGATCAGCCCGGTACGGCAGTgccgc                                                                                                                                                     <  1:717374/150‑1 (MQ=255)   agtgcacgatgacgaacaaccctggatcagcatggctcatccaaagatgttcaccgccatgcgtgacaacgtggagggctacgtgatcaaccctctgaccaacaacaacttcgccaccaccaaggtgaagtagaacaacaacgaccgccg                                                                                                                                                   >  2:1021196‑M1/145‑150 (MQ=255)     tgtacgatgacgaacaaccctggatcagcatggctcatccaaagatgttcaccgccatgcgtgacaacgtggagggctacgtgatcaaccctctgaccaacaacaacttcgccaccaccaaggtgaagtagaacaacaacgaCCGCCGGt                                                                                                                                                 <  1:729024‑M1/8‑1 (MQ=255)           ggCGTATGAGCGCGAAGGTCAGCAAGGTGATGCCGAAAAAGGTCGGTATCAGCAGGCCAAGGCGCCGGGCAATAAAACTCAACATTGTCGGGGTTACCTCATCAGGCCGTGGGGCGATCAGCCCGGTACGGCAGTGCCGCCGGTC‑CCCgt                                                                                                                                          <  1:1059648/150‑1 (MQ=255)             cGTATGAGCGCGAAGGTCAGCAAGGTGATGCCGAAAAAGGTCGGTATCAGCAGGCCAAGGCGCCGGGCAATAAAACTCAACATTGTCGGGGTTACCTCATCAGGCCGTGGGGCGATCAGCCCGGTACGGCAGTGCCGCCGGTC‑CCCgtgt                                                                                                                                        <  1:961650/150‑1 (MQ=255)                 tGAGCGCGAAGGTCAGCAAGGTGATGCCGAAAAAGGTCGGTATCAGCAGGCCAAGGCGCCGGGCAATAAAACTCAACATTGTCGGGGTTACCTCATCAGGCCGTGGGGCGATCAGCCCGGTACGGCAGTGCCGCCGGTC‑CCCGTgtgggt                                                                                                                                    >  1:528405/1‑150 (MQ=255)                           gatcagcatggctcatccaaagatgttcaccgccatgcgtgacaacgtggagggctacgtgatcaaccctctgaccaacaacaacttcgccaccaccaaggtgaagtagaacaacaacgaCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGt                                                                                                                          >  2:729024‑M1/121‑150 (MQ=255)                               aGCAAGGTGATGCCGAAAAAGGTCGGTATCAGCAGGCCAAGGCGCCGGGCAATAAAACTCAACATTGTCGGGGTTACCTCATCAGGCCGTGGGGCGATCAGCCCGGTACGGCAGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCgtt                                                                                                                      <  2:878863/150‑1 (MQ=255)                                  aaGGTGATGCCGAAAAAGGTCGGTATCAGCAGGCCAAGGCGCCGGGCAATAAAACTCAACATTGTCGGGGTTACCTCATCAGGCCGTGGGGCGATCAGCCCGGTACGGCAGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCgttgtt                                                                                                                   <  1:406201/150‑1 (MQ=255)                                     gTGATGCCGAAAAAGGTCGGTATCAGCAGGCCAAGGCGCCGGGCAATAAAACTCAACATTGTCGGGGTTACCTCATCAGGCCGTGGGGCGATCAGCCCGGTACGGCAGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCgttgttgtt                                                                                                                >  2:512469/1‑150 (MQ=255)                                        aTGCCGAAAAAGGTCGGTATCAGCAGGCCAAGGCGCCGGGCAATAAAACTCAACATTGTCGGGGTTACCTCATCAGGCCGTGGGGCGATCAGCCCGGTACGGCAGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCGTTGTTGTTCTa                                                                                                             <  2:747262/150‑1 (MQ=255)                                          gCCGAAAAAGGTCGGTATCAGCAGGCCAAGGCGCCGGGCAATAAAACTCAACATTGTCGGGGTTACCTCATCAGGCCGTGGGGCGATCAGCCCGGTACGGCAGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCGTTGTTGTTCTACt                                                                                                           >  1:1055216/1‑150 (MQ=255)                                                    gTCGGTATCAGCAGGCCAAGGCGCCGGGCAATAAAACTCAACATTGTCGGGGTTACCTCATCAGGCCGTGGGGCGATCAGCCCGGTACGGCAGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCGTTGTTGTTCTACTTCACCTtggt                                                                                                 >  2:1078869/1‑150 (MQ=255)                                                        gTATCAGCAGGCCAAGGCGCCGGGCAATAAAACTCAACATTGTCGGGGTTACCTCATCAGGCCGTGGGGCGATCAGCCCGGTACGGCAGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCGTTGTTGTTCTACTTCACCTtggtggtg                                                                                             >  1:364406/1‑150 (MQ=255)                                                        gTATCAGCAGGCCAAGGCGCCGGGCAATAAAACTCAACATTGTCGGGGTTACCTCATCAGGCCGTGGGGCGATCAGCCCGGTACGGCAGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCGTTGTTGTTCTACTTCACCTtggtggtg                                                                                             <  2:928559/150‑1 (MQ=255)                                                             agcagGCCAAGGCGCCGGGCAATAAAACTCAACATTGTCGGGGTTACCTCATCAGGCCGTGGGGCGATCAGCCCGGTACGGCAGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGaa                                                                                        <  1:1078869/150‑1 (MQ=255)                                                              gcagGCCAAGGCGCCGGGCAATAAAACTCAACATTGTCGGGGTTACCTCATCAGGCCGTGGGGCGATCAGCCCGGTACGGCAGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAg                                                                                       <  2:1055216/150‑1 (MQ=255)                                                                agGCCAAGGCGCCGGGCAATAAAACTCAACATTGTCGGGGTTACCTCATCAGGCCGTGGGGCGATCAGCCCGGTACGGCAGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAgtt                                                                                     <  2:528405/150‑1 (MQ=255)                                                                      aGGCGCCGGGCAATAAAACTCAACATTGTCGGGGTTACCTCATCAGGCCGTGGGGCGATCAGCCCGGTACGGCAGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAgttgttgtt                                                                               >  2:909308/1‑150 (MQ=255)                                                                         gtggagggctacgtgatcaaccctctgaccaacaacaacttcgccaccaccaaggtgaagtagaacaacaacgaCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCgttg                                                                                                                     <  2:572326‑M1/35‑1 (MQ=255)                                                                         gtggagggctacgtgatcaaccctctgaccaacaacaactccgccaccaccaaggtgaagtagaacaacaacgaCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCgttg                                                                                                                     >  1:572326‑M1/75‑109 (MQ=255)                                                                             gggCAATAAAACTCAACATTGTCGGGGTTACCTCATCAGGCCGTGGGGCGATCAGCCCGGTACGGCAGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAGTTGTTGTTGGTCaga                                                                        <  1:512469/150‑1 (MQ=255)                                                                                cAATAAAACTCAACATTGTCGGGGTTACCTCATCAGGCCGTGGGGCGATCAGCCCGGTACGGCAGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAGTTGTTGTTGGTCAGAggg                                                                     <  2:661800/150‑1 (MQ=255)                                                                                   tAAAACTCAACATTGTCGGGGTTACCTCATCAGGCCGTGGGGCGATCAGCCCGGTACGGCAGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAgttgttgtt                                                                               <  2:486321/137‑1 (MQ=255)                                                                                   tAAAACTCAACATTGTCGGGGTTACCTCATCAGGCCGTGGGGCGATCAGCCCGGTACGGCAGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAgttgttgtt                                                                               >  1:486321/1‑137 (MQ=255)                                                                                   tAAAACTCAACATTGTCGGGGTTACCTCATCAGGCCGTGGGGCGATCAGCCCGGTACGGCAGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAGTTGTTGTTGGTCAGAGGGTTg                                                                  >  1:842685/1‑150 (MQ=255)                                                                                   tAAAACTCAACATTGTCGGGGTTACCTCATCAGGCCGTGGGGCGATCAGCCCGGTACGGCAGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAGTTGTTGTTGGTCAGAGGGTTg                                                                  <  1:909308/150‑1 (MQ=255)                                                                                     aaaCTCAACATTGTCGGGGTTACCTCATCAGGCCGTGGGGCGATCAGCCCGGTACGGCAGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCGTTGTTGTTCTACTTCACCTTGGTGGTAGCGAAGTTGTTGTTGGTCAGAGGGTTGAt                                                                <  1:860286/150‑1 (MQ=255)                                                                                          cAACATTGTCGGGGTTACCTCATCAGGCCGTGGGGCGATCAGCCCGGTACGGCAGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCgttgttgtt                                                                                                                <  2:942801/97‑1 (MQ=255)                                                                                          cAACATTGTCGGGGTTACCTCATCAGGCCGTGGGGCGATCAGCCCGGTACGGCAGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCgttgttgtt                                                                                                                >  1:942801/1‑97 (MQ=255)                                                                                                  tCGGGGTTACCTCATCAGGCCGTGGGGCGATCAGCCCGGTACGGCAGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAGTTGTTGTTGGTCAGAGGGTTGATCACGTAGCCCTcc                                                   >  1:363880/1‑150 (MQ=255)                                                                                                    ggggTTACCTCATCAGGCCGTGGGGCGATCAGCCCGGTACGGCAGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAGTTGTTGTTGGTCAGAGGGTTGATCACGTAGCCCTCCAc                                                 <  1:773512/150‑1 (MQ=255)                                                                                                    ggggTTACCTCATCAGGCCGTGGGGCGATCAGCCCGGTACGGCAGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAGTTGTTGTTGGTCAGAGGGTTGATCACGTAGCCCTCCAc                                                 >  2:793594/1‑150 (MQ=255)                                                                                                           ccTCATCAGGCCGTGGGGCGATCAGCCCGGTACGGCAGTGCAGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAGTTGTTGTTGGTCAGAGGGTTGATCACGTAGCCCTCCACGTTGTCa                                          >  1:799552/1‑150 (MQ=255)                                                                                                                 caGGCCGTGGGGCGATCAGCCCGGTACGGCAGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAGTTGTTGTTGGTCAGAGGGTTGATCACGTAGCCCTCCACGTTGTCACGCATg                                    >  1:318535/1‑150 (MQ=255)                                                                                                                     ccGTGGGGCGATCAGCCCGGTACGGCAGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAGTTGTTGTTGGCCAGAGGGTTGATCACGTAGCCCTCCACGTTGTCACGCATGGCgg                                >  1:320893/1‑150 (MQ=255)                                                                                                                      cGTGGGGCGATCAGCCCGGTACGGCAGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAGTTGTTGTTGGTCAGAGGGTTGATCACGTAGCCCTCCACGTTGTCACGCATGGCGGt                               <  1:793594/150‑1 (MQ=255)                                                                                                                                tCAGCCCGGTACGGCAGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAGTTGTTGTTGGTCAGAGGGTTGCTCACGTAGCCCTCCACGTTGTCACGCATGGCGGTGAACATCttt                     <  2:318535/150‑1 (MQ=255)                                                                                                                                ccAGCCCGGTACGGCAGTGCAGCCGGTC‑CCCGTGTGGTTGGCCGGCGGTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAGTTGTTGTTGGTCAGAGGGTTGATCACGTAGCCCTCCACGTTGTCACGCATGGCGGTGAACATCttt                     <  2:799552/149‑1 (MQ=255)                                                                                                                                     tagaacaacaacgaCCGCCGGCCACCCACACGGG‑GACCGGCGGACGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAGTTGTTGTTGGTCAGAGGGTTGATCACGTAGCCCTCCACGTTGTCACGCATGGCGGTGAACATCTTTGGAt                 <  2:1032420‑M1/135‑1 (MQ=255)                                                                                                                                     tagaacaacaacgaCCGCCGGCC‑ACCCACACGGGGACCGGCGGTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAGTTGTTGTTGGTCAGAGGGTTGATCACGTAGCCCTCCACGTTGTCACGCATGGCGGTGAACATCTTTGGAt                 >  1:1032420‑M1/15‑149 (MQ=255)                                                                                                                                      cGGTACGGCAGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAGTTGTTGTTGGTCAGAGGGTTGATCACGTAGCCCTCCACGTTGTCACGCATGGCGGTGAACATCTTTGGATGa               <  2:842685/150‑1 (MQ=255)                                                                                                                                         tACGGCAGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAgttgttgt                                                                                >  2:446524/1‑82 (MQ=255)                                                                                                                                         tACGGCAGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAgttgttgt                                                                                <  1:446524/82‑1 (MQ=255)                                                                                                                                            ggCAGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAGTTGTTGTTGGTCAGAGGGTTGATCACGTAGCCCTCCACGTTGTCACGCATGGCGGTGAACATCTTTGGATGAGCCATg         >  2:1152082/1‑150 (MQ=255)                                                                                                                                             gCAGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAGTTGTTGTTGGTCAGAGGGTTGATCACGTAGCCCTCCACGTTGTCACGCATg                                    >  2:305531/1‑122 (MQ=255)                                                                                                                                             ccAGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAGTTGTTGTTGGTCAGAGGGTTGATCACGTAGCCCTCCACGTTGTCACGCATg                                    <  1:305531/121‑1 (MQ=255)                                                                                                                                                gTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAGTTGTTGTTGGTCAGAGGGTTGATCACGTAGCCCTCCACGTTGTCACGCATGGCGGTGAACATCTTTGGATGAGCCATGCTGa     <  2:363880/150‑1 (MQ=255)                                                                                                                                                   CCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAGTTGTTGTTGGTCAGAGGGTTGATCACGTAGCCCTCCACGTTGTCACGCATGGCGGTGAACATCTTTGGATGAGCCATGCTGATcc  <  1:768143‑M1/150‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                       CCGGGGATCAGGCGTATGAGCGCGAAGGTCAGCAAGGTGATGCCGAAAAAGGTCGGTATCAGCAGGCCAAGGCGCCGGGCAATAAAACTCAACATTGTCGGGGTTACCTCATCAGGCCGTGGGGCGATCAGCCCGGTACGGCAGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAGTTGTTGTTGGTCAGAGGGTTGATCACGTAGCCCTCCACGTTGTCACGCATGGCGGTGAACATCTTTGGATGAGCCATGCTGATCC  >  NC_002947/1021895‑1022190

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.