New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 1531788 = | 54 (1.200) | 6 (0.160) | 6/200 | NT | 16.8% | coding (130/630 nt) | PP_1344 | hypothetical protein |
? | NC_002947 | 1531884 = | 16 (0.440) | coding (34/630 nt) | PP_1344 | hypothetical protein |
CTGCAAGTGCTCCAGGCGCTCGGCCTGGTTCAGCAGCAGGCGCAGCGGGCGCACCTGGCGCAGCAGGGCGGAAGGTGGCTGGGCGGGGGAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAGCCAAAGACAAGACTGGTTCTCGATAGCTTTCATGTTGCCAAGCCT > NC_002947/1531639‑1531929 | cTGCAAGTGCTCCAGGCGCTCGGCCTGGTTCAGGAGCAGGCGCAGCGGGCGCACCTGGCGCAGCAGGGCGGAAGGTGGCTGGGCGGGGGAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGTCTAACATCTCCGtt < 1:442998/150‑1 (MQ=255) tCCAGGCGCTCGGCCTGGTTCAGCAGCAGGCGCAGCGGGCGCACCTGGCGCAGCAGGGCGGAAGGTGGCTGGGCGGGGGAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCg > 2:968175/1‑150 (MQ=255) ccAGGTGCGCGGCCTGGTTCAGCAGCAGGCGCAGCGGGCGCACCTGGCGCAGCAGGGCGGAAGGTGGCTGGGCGGGGGAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCgg < 2:85631/150‑1 (MQ=255) aGGCGCTCGGCCTGGTTCAGCAGCAGGCGCAGCGGGGGCGGCTGGCGCAGCAGGGCGGAAGGTGGCTGGGCGGGGGAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCGGcc < 1:553958/150‑1 (MQ=255) cgcTCGGCCTGGTTCAGCAGCAGGCGCAGCGGGCGCACCTGGCGCAGCAGGGCGGAAGGTGGCTGGGCGGGGGAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCGGCctct < 1:154421/150‑1 (MQ=255) gcTCGGCCTGGTTCAGCAGCAGGCGCAGCGGGCGCACCTGGCGCAGCAGGGCGGAAGGTGGCTGGGCGGGGGAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCGGCCTCtt > 1:890165/1‑150 (MQ=255) gCCTGGTTCAGCAGCAGGCGCAGCGGGCGCACCTGGCGCAGCAGGGCGGAAGGTGGCTGGGCGGGGGAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCgg > 2:780407/1‑150 (MQ=255) gCCTGGTTCAGCAGCAGGCGCAGCGGGCGCACCTGGCGCAGCAGGGCGCAAGGTGGTTGGGCGGGGGAGGGTTTGTCGGCCATGGGGGTACGCGTGCAGTGACGTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCgg < 1:935642/150‑1 (MQ=255) gTTCAGCAGCAGGCGCAGCGGGCGCACCTGGCGCAGCAGGGCGGAAGGTGGCTGGGCGGGGGAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGTGaa > 1:1031445/1‑150 (MQ=255) ttCAGCAGCAGGCGCAGCGGGCGCACCTGGCGCAGCAGGGCGGAAGGTGGCTGGGCGGGGGAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAAc < 1:650958/150‑1 (MQ=255) tCAGCAGCAGGCGCAGCGGGCGCACCTGGCGCAGCAGGGCGGAAGGTGGCTGGGCGGGGGAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAAcc > 2:748343/1‑150 (MQ=255) gcagcagGCGCAGCGGGCGCACCTGGCGCAGCCGGCTGTAAGGTGGCTGGGCGGGGGAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGc > 1:886703/1‑150 (MQ=255) atttccacgatgctgatacagcgttttggcaggggcctgttttagataggggcattttcactgagttcaaggcttggcaacatgaaagctatcgagaaccagtcttgtctttggcTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTc < 1:631679‑M1/35‑1 (MQ=255) agcagGCGCAGCGGGCGCACCTGGCGCAGCAGGGCGGAAGGTGGCTGGGCGGGGGAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTc > 2:127314/1‑150 (MQ=255) tttccacgatgctgatacagcgttttggcaggggcctgttttagataggggcattttcactgagttcaaggcttggcaacatgaaagctatcgagaaccagtcttgtctttggcTGCCTGTGCCGGc < 2:743556‑M1/13‑1 (MQ=255) tttccacgatgctgatacagcgttttggcaggggcctgttttagataggggcattttcactgagttcaaggcttggcaacatgaaagctatcgagaaccagtcttgtctttggcTGCCTGTGCCGGc > 1:743556‑M1/115‑127 (MQ=255) gcagGCGCAGCGGGCGCACCTGGCGCAGCAGGGCGGAAGGTGGCTGGGCGGGGGAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTcc > 2:953569/1‑150 (MQ=255) gcgcAGCGGGCGCACCTGGCGCAGCAGGGCGGAAGGTGGCTGGGCGGGGGAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCtaca > 1:1174733/1‑147 (MQ=255) gcAGCGGGCGCACCTGGCGCAGCAGGGCGGAAGGTGGCTGGGCGGGGGAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAg < 2:890165/150‑1 (MQ=255) cAGCGGGCGCACCTGGCGCAGCAGGGCGGAAGGTGGCTGGGCGGGGGGGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAgg < 1:998639/150‑1 (MQ=255) cAGCGGGCGCACCTGGCGCAGCAGGGCGGAAGGTGGCTGGGCGGGGGAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGTCTAGCGGCGCCATTGCCTAGGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAgg < 1:210219/150‑1 (MQ=255) aGCGGGCGCACCTGGCGCAGCAGGGCGGAAGGTGGCTGGGCGGGGGAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAggg < 2:1080542/150‑1 (MQ=255) gctgatacagcgttttggcaggggcctgttttagataggggcattttcactgagttcaaggcttggcaacatgaaagctatcgagaaccagtcttgtctttggcTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGtt < 2:338149‑M1/46‑1 (MQ=255) ggCGCACCTGGCGCAGCAGGGCGGAAGGTGGCTGGGCGGGGGAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGGCGTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTAt < 1:748343/150‑1 (MQ=255) aCCTGGCGCAGCAGGGCGGAAGGTGGCTGGGCGGGGGAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAg < 2:1058434/139‑1 (MQ=255) aCCTGGCGCAGCAGGGCGGAAGGTGGCTGGGCGGGGGAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAg > 1:1058434/1‑139 (MQ=255) ccTGGCGCAGCAGGGCGGAAGGTGGCTGGGCGGGGGAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCgg < 1:204722/108‑1 (MQ=255) ccTGGCGCAGCAGGGCGGAAGGTGGCTGGGCGGGGGAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCgg > 2:204722/1‑108 (MQ=255) tGGCGCAGCAGGGCGGAAGGTGGCTGGGCGGGGGTGGATGGGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCt < 2:886703/150‑1 (MQ=255) gcgcAGCAGGGCGGAAGGTGGCTGGGCGGGGGAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTg < 1:953569/150‑1 (MQ=255) tttggcaggggcctgttttagataggggcattttcactgagttcaaggcttggcaacatgaaagctatcgagaaccagtcttgtctttggcTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGt > 2:631679‑M1/92‑150 (MQ=255) gcagcaGGGCGGAAGGTGGCTGGGCGGGGGAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAg > 2:470619/1‑132 (MQ=255) gcagcaGGGCGGAAGGTGGCTGGGCGGGGGAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAg < 1:470619/132‑1 (MQ=255) gcagGGCGGAAGGTGGCTGGGCGGGGGAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGa < 1:933823/150‑1 (MQ=255) ggCGGAAGGTGGCTGGGCGGGGGAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGAGCgg < 1:673429/150‑1 (MQ=255) aGGTGGCTGGGCGGGGGGCGCCTGGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCCCAGTCTAACACCTCCGTTGCATGTGCTGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGAGCGGGTTCAc < 1:968175/150‑1 (MQ=255) ttttagataggggcattttcactgagttcaaggcttggcaacatgaaagctatcgagaaccagtcttgtctttggcTGCCTGTGCCGGCCTCTTCGCgg > 1:613259‑M1/77‑99 (MQ=255) ttttagataggggcattttcactgagttcaaggcttggcaacatgaaagctatcgagaaccagtcttgtctttggcTGCCTGTGCCGGCCTCTTCGCgg < 2:613259‑M1/23‑1 (MQ=255) ggTGGCTGGGCGGGGGAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGAGCGGGTTCAcc < 2:1008304/150‑1 (MQ=255) ggCTGGGCGGGGGAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGAGCGGGTTCACCcgc < 1:860313/150‑1 (MQ=255) ataggggcattttcactgagttcaaggcttggcaacatgaaagctatcgagaaccagtcttgtctttggcTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGAGCGGGTTCACCCGCGaa > 1:338149‑M1/71‑150 (MQ=255) ggCGGGGGAGGGTGTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGAGCGGGTTCACCCGCGAaga < 1:44190/150‑1 (MQ=255) gCGGGGGAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGGGGGCACAGTCTAACATCTCCGTTGCCTGTGCCGCCCTCTTCGCCCGGCGACTAATCCGAGCGCGGGGTATCTGTATGGTGTAGGAGCGGGTTCACCCGCGAagag > 2:865302/1‑150 (MQ=255) gggAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCg < 1:127314/150‑1 (MQ=255) ttcaaggcttggcaacatgaaagctatcgagaaccagtcttgtctttggcTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGAGCGGGTTCACCcgc < 1:995123‑M1/77‑1 (MQ=255) ttcaaggcttggcaacatgaaagctatcgagaaccagtcttgtctttggcTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGAGCGGGTTCACCcgc > 2:995123‑M1/51‑127 (MQ=255) gCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGAGCGGGTTCACCCGCGAaga < 2:1155948/131‑1 (MQ=255) gCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGAGCGGGTTCACCCGCGAaga > 1:1155948/1‑131 (MQ=255) gTACGCGTGAAGTGACGTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGACAGGGTTATCGGTATCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAGCCAaagacaagac < 1:780407/150‑1 (MQ=255) tggaGTGAAGTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTTCTGCCAGGGTTATCGGTTTCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAGCCAAAGACAAGACTGGTtct < 1:746105/147‑1 (MQ=255) gAAGTGACGTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAGCCAAAGACAAGACTGGTtctc < 1:865302/150‑1 (MQ=255) tGACGTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGAGCGGGTTCACCCGCGAagag > 1:415310/1‑111 (MQ=255) tGACGTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGAGCGGGTTCACCCGCGAagag < 2:415310/111‑1 (MQ=255) tCTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAgg < 2:1113343/57‑1 (MQ=255) tCTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAgg > 1:1113343/1‑57 (MQ=255) tCTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGAGCGGGTTCACCCGCGAAGAgg < 2:903914/98‑1 (MQ=255) tCTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGAGCGGGTTCACCCGCGAAGAgg > 1:903914/1‑98 (MQ=255) tAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAGCCAAAGACAAGACTGGTTCTCGATAGCTTTCATGTTGCCaa > 2:624482/1‑150 (MQ=255) aTCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGAGCGGGTTCACCCGCGAAGAgg > 2:69687/1‑92 (MQ=255) aTCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGAGCGGGTTCACCCGCGAAGAgg < 1:69687/92‑1 (MQ=255) aTCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAGCCAaagacaa > 2:622761/1‑115 (MQ=255) aTCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAGCCAaagacaa < 1:622761/115‑1 (MQ=255) aTCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAGCCAAAGACAAGACTGGTTCTCGATAGCTTTCATGTTGCCAAGCCt > 2:817762/1‑150 (MQ=255) ctcCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAg > 2:811847/1‑48 (MQ=255) ctcCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAg < 1:811847/48‑1 (MQ=255) | CTGCAAGTGCTCCAGGCGCTCGGCCTGGTTCAGCAGCAGGCGCAGCGGGCGCACCTGGCGCAGCAGGGCGGAAGGTGGCTGGGCGGGGGAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAGCCAAAGACAAGACTGGTTCTCGATAGCTTTCATGTTGCCAAGCCT > NC_002947/1531639‑1531929 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |