New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1838113 =	41 (0.910)	6 (0.140)	5/228	NT	13.2%	intergenic (+18/+86)	PP_1642/PP_1643	hypothetical protein/membrane protein
	?	NC_002947	1838195 =	41 (0.990)					intergenic (+100/+4)	PP_1642/PP_1643	hypothetical protein/membrane protein

GACAAGCAGCCAACCAGCCAGCGCGACCTGGCTCTGGTGCAGCAGGCGTTCAACCAGTGGCATGCAGAGAGCGGGCGGCCGCTGTGCCAGTTGTCGGTGATGCTGGCGCACACCGTCAACCATTGAGCCTTGTGTT‑GCTCCCATTCGCGGGCATGCCCGCTCCCACAGTAATCGCACCGCACTTAAGGCCTGTGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAAATCTAACTGCCTTCGCCCGCCATGCGCCGCTCATGCTGGAACTTCCAGCGCACGTACAGTAGCCCG  >  NC_002947/1837970‑1838262                                                                                                                                                 |                                                                                                                                                      tgctggcggcgttcgacccggcgcgggcggtattcggctggcttgaagtgctggtgagcctggggctgttcactgcccggctactgtacgtgcgggtttagttccagcatgagcggcgcatggcgggcgaaggcagttagatttTTcgcg                                                                                                                                                  >  1:1052795‑M1/145‑150 (MQ=255)  gctggcggcgttcgacccggcgcgggcggtattcggctggcttgaagtgctggtgagcctggggctgttcattgccgggctactgtacgtgcgctggaagttccagcatgagcggcgcatggcgggcgaaggcagttagatttTTCGCgg                                                                                                                                                 >  1:45586‑M1/144‑150 (MQ=255)    aaGCAGCCAACCAGCCAGCGCGACCTGGCTCTGGTGCAGCAGGCGATAAAATAGGGGCATGCAGAGAGCGGGCGGCCGCTGTGCCAGTTGTCGGTGATGCTGGCGCACACCGTCAACCATTGAGCCTTGTGTT‑GCTCCCATTCGCGGGCa                                                                                                                                              >  1:220709/1‑150 (MQ=255)        ggcgttcgacccggcgcgggcggtattcggctggcttgaagtgctggtgagcctggggctgttcattgccgggctactgtacgtgcgctggaagttccagcatgagcggcgcatggcgggcgaaggcagttagatttTTcgc                                                                                                                                                   <  2:44540‑M1/5‑1 (MQ=255)        ggcgttcgacccggcgcgggcggtattcggctggcttgaagtgctggtgagccgggggctgttcattgccgggctactgtacgtgcgctggaagttccagcatgagcggcgcatggcgggcgaaggcagttagatttTTcgc                                                                                                                                                   >  1:44540‑M1/138‑142 (MQ=255)          ccAACCAGCCAGCGCGACCTGGCTCTGGTGCAGCAGGCGTTCAACCAGTGGCATGCAGAGAGCGGGCGGCCGCTGTGCCAGTTGTCGGTGATGCTGGCGCACACCGTCAACCATTGAGCCTTGTGTT‑GCTCCCATTCGCGGGCATGCCCg                                                                                                                                        >  2:1064404/1‑150 (MQ=255)                agccagcGCGACCTGGCTCTGGTGCAGCAGGCGTTCAACCAGTGGCATGCAGAGAGCGGGCGGCCGCTGTGCCAGTTGTCGGTGATGCTGGCGCACACCGTCAACCATTGAGCCTTGTGTT‑GCTCCCATTCGCGGGCATGCCCGcgaatg                                                                                                                                  <  2:613726/150‑6 (MQ=255)                  ccggcgcgggcggtattctgctggcttgaagtgctggtgagcctggggctgttcattgccgggctactgtacgtgcgctggaagttccagcatgagcggcgcatggcgggcgaaggcagttagatttTTCGCGGGCGtgcccgcgaaaaa                                                                                                                                 >  2:1124316‑M1/128‑144 (MQ=255)                           ccTGGCTCTGGTGCAGCAGGCGTTCAACCAGTGGCATGCAGAGAGCGGGCGGCCGCTGTGCCAGTTGTCGGTGATGCTGGCGCACACCGTCAACCATTGAGCCTTGTGTT‑GCTCCCATTCGCGGGCATGc                                                                                                                                           <  1:1084664/130‑1 (MQ=255)                           ccTGGCTCTGGTGCAGCAGGCGTTCAACCAGTGGCATGCAGAGAGCGGGCGGCCGCTGTGCCAGTTGTCGGTGATGCTGGCGCACACCGTCAACCATTGAGCCTTGTGTT‑GCTCCCATTCGCGGGCATGc                                                                                                                                           >  2:1084664/1‑130 (MQ=255)                            cTGGCTCTGGTGCAGCAGGCGTTCAACCAGTGGCATGCAGAGAGCGGGCGGCCGCTGTGCCAGTTGTCGGTGATGCTGGCGCACACCGTCAACCATTGAGCCTTGTGTT‑GCTCCCATTCGCGGGCATGCCCGCTCCCACAGTAATcgcac                                                                                                                      >  2:818051/1‑150 (MQ=255)                                 tctGGTGCAGCAGGCGTTCAACCAGTGGCATGCAGAGAGCGGGCGGCCGCTGTGCCAGTTGTCGGTGATGCTGGCGCACACCGTCAACCATTGAGCCTTGTGTT‑GCTCCCATTCGCGGGCATGCCCGCt                                                                                                                                      <  1:1009901/129‑1 (MQ=255)                                 tctGGTGCAGCAGGCGTTCAACCAGTGGCATGCAGAGAGCGGGCGGCCGCTGTGCCAGTTGTCGGTGATGCTGGCGCACACCGTCAACCATTGAGCCTTGTGTT‑GCTCCCATTCGCGGGCATGCCCGCt                                                                                                                                      >  2:1009901/1‑129 (MQ=255)                                    ggctggcttgaagtgctggtgagcctggggctgttcattgccgggctactgtacgtgcgctggaagttccagcatgagcggcgcatggcgggcgaaggcagttagatttTTCGCGGGCACGCCCGCTCCCACAGTAATCGCACCGCACtt                                                                                                               <  1:309278‑M1/41‑1 (MQ=255)                                     gTGCAGCAGGCGTTCAACCAGTGGCATGCAGAGAGCGGGCGGCCGCTGTGCCAGTTGTCGGTGATGCTGGCGCACACCGTCAACCATTGAGCCTTGTGTT‑GCTCCCATTCGCGGGCATGCCCGCTCCCACAGTAATCGCACCGCACTTaa                                                                                                             >  1:813959/1‑150 (MQ=255)                                     gTGCAGCAGGCGTTCAACCAGTGGCATGCAGAGAGCGGGCGGCCGCTGTGCCAGTTGTCGGTGATGCTGGCGCACACCGTCAACCATTGAGCCTTGTGTT‑GCTCCCATTCGCGGGCATGCCCGCTCCCACAGTAATCGCAACGCACTTaa                                                                                                             >  1:344096/1‑150 (MQ=255)                                          gcagGCGTTCAACCAGTGGCATGCAGAGAGCGGGCGGCCGCTGTGCCAGTTGTCGGTGATGCTGGCGCACACCGTCAACCATTGAGCCTTGTGTT‑GCTCCCATTCGCGGGCCTGCCCGCTCCCACAGTAATCGCCCCCCACCTCAGGCCt                                                                                                        >  2:894319/1‑150 (MQ=255)                                              gCGTTCAACCAGTGGCATGCAGAGAGCGGGCGGCCGCTGTGCCAGTTGTCGGTGATGCTGGCGCACACCGTCAACCATTGAGCCTTGTGTT‑GCTCCCATTCGCGGCCATGCCCGCTCCCACAGTAATCGCACCGCACTTAAGGCCTGTGc                                                                                                    >  2:871831/1‑150 (MQ=255)                                                    aaCCAGTGGCATGCAGAGAGCGGGCGGCCGCTGTGCCAGTTGTCGGTGATGCTGGCGCACACCGTCAACCATTGAGCCTTGTGTT‑GCTCCCATTCGCGGGCATGCCCGCTCCCACAGTAATCGCACCGCACTTAAGGCCTGTGCAGTAcc                                                                                              >  1:151948/1‑150 (MQ=255)                                                      ccAGTGGCATGCAGAGAGCGGGCGGCCGCTGTGCCAGTTGTCGGTGATGCTGGCGCACACCGTCAACCATTGAGCCTTGTGTT‑GCTCCCATTCGCGGGCATGCCCGCTCCCACAGTAATCGCACCGCACTTAAGGCCTGTGCAGTACCtg                                                                                            >  2:484308/1‑150 (MQ=255)                                                       cAGTGGCATGCAGAGAGCGGGCGGCCGCTGTGCCAGTTGTCGGTGATGCTGGCGCACACCGTCAACCATTGAGCCTTGTGTT‑GCTCCCATTCGCGTGCATGCCCGCTCCCACAGTAATCGCACCGCACTTAAGGCCTGTGCAGTACCtgt                                                                                           <  1:333579/150‑1 (MQ=255)                                                        gagcctggggctgttcattgccgggctactgtacgtgcgctggaagttccagcatgagcggcgcatggcgggcgaaggcagttagatttTTCGCGGGCATGCCCGCTCCCACAGTAATCGCACCGCACTTAAGGCCTGTGCAGTACCtgt                                                                                           >  1:1033981‑M1/90‑150 (MQ=255)                                                        aGTGGCATGCAGAGAGCGGGCGGCCGCTGTGCCAGTTGTCGGTGATGCTGGCGCACACCGTCAACCATTGAGCCTTGTGTT‑GCTCCCATTCGCGGGCATGCCCGCTCCCACAGTAATCGCACCGCACTTAAGGCCTGTGCAGTACCtgtg                                                                                          <  2:802026/150‑1 (MQ=255)                                                          gcctggggctgttcattgccgggctactgtacgtgcgctggaagttccagcatgagcggcgcatggcgggcgaaggcagttagatttTTCGCGGGCACGCCCGCTCCCACAGTAATCGCACCGCACTTAAGGCCTGTGCAGTACCTGTgg                                                                                         >  2:309278‑M1/88‑150 (MQ=255)                                                            gCATGCAGAGAGCGGGCGGCCGCTGTGCCAGTTGTCGGTGATGCTGGCGCACACCGTCAACCATTGAGCCTTGTGTT‑GCTCCCATTCGCGGGCATGCCCGCTCCCACAGTAATCGCACCGCACTTAAGGCCTGTGCAGTACCtgt                                                                                           <  1:594743/145‑1 (MQ=255)                                                            gCATGCAGAGAGCGGGCGGCCGCTGTGCCAGTTGTCGGTGATGCTGGCGCACACCGTCAACCATTGAGCCTTGTGTT‑GCTCCCATTCGCGGGCATGCCCGCTCCCACAGTAATCGCACCGCACTTAAGGCCTGTGCAGTACCtgt                                                                                           >  2:594743/1‑145 (MQ=255)                                                              aTGCAGAGAGCGGGCGGCCGCTGTGCCAGTTGTCGGTGATGCTGGCGCACACCGTCAACCATTGAGCCTTGTGTT‑GCTCCCATTCGCGGGCATGCCCGCTCCCACAGTAATCGCACCGCACTTAAGGCCTGTGCAGTACCTGTGGGAGCg                                                                                    >  1:295154/1‑150 (MQ=255)                                                                   gagagCGGGCGGCCGCTGTGCCAGTTGTCGGTGATGCTGGAGCACCCCCTCCA‑CATAAAACCCTGGGTTCGCTCCCATTCGCGGGCATGCCCGCTCCCACAGTAATCGCACCGCACTTAAGGCCTGTGCAGTACCTGTGGGAGCGGGCGt                                                                               <  1:744918/150‑1 (MQ=255)                                                                     gagCGGGCGGCCGCTGTGCCAGTTGTCGGTGATGCTGGCGCACACCGTCAACCATTGAGCCTTGTGTT‑GCTCCCATTCGCGGGCATGCCCGCTCCCACAGTAATCGCACCGCACTTAAGGCCTGTGCAGTACCTGTGGGAGCGGGcacgc                                                                             <  1:1064404/150‑5 (MQ=255)                                                                     gagCGGGCGGCCGCTGTGCCAGTTGTCGGTGATGCTGGCGCACACCGTCAACCATTGAGCCTTGTGTT‑GCTCCCATTCGCGGGCATGCCCGCTCCCACAGTAATCGCACCGCACTTAAGGCCTGTGCAGTACCTGTGGGAGCGGGCGTGc                                                                             <  2:220709/150‑1 (MQ=255)                                                                                cGCTGTGCCAGTTGTCGGTGATGCTGGCGCACACCGTCAACCATTGAGCCTTGTGTT‑GCTCCCATTCGCGGGCATGCCCGCTCCCACAGTAATCGCACCGCACTTAAGGCCTGTGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAAAt                                                                  <  2:151948/150‑1 (MQ=255)                                                                                       ccAGTTGTCGGTGATGCTGGCGCACGCCGTCAACCATTGAGCCTTGTGTT‑GCTCACATTCGCGGGCATGCCAGCTCCCACAGTCATCGCACCGCACTTAAAGCCTGTGCAGTACCGCTGGCAGCGGGCGTGACCCGGCAAAATCTAACtt                                                           >  2:161868/1‑149 (MQ=255)                                                                                        cAGTTGTCGGTGATGCTGGCGCACACCGTCAACCATTGAGCCTTGTGTT‑GCTCCCATTCGCGGGCATGCCCGCTCCCACAGTAATCGCACCGCCCTTAAGGCCTGTGCAGTACCTGTGGGAGCGGGCGt                                                                               <  1:834596/129‑1 (MQ=255)                                                                                        cAGTTGTCGGTGATGCTGGCGCACACCGTCAACCATTGAGCCTTGTGTT‑GCTCCCATTCGCGGGCATGCCCGCTCCCACAGTAATCGCACCGCACTTAAGGCCTGTGCAGTACCTGTGGGAGCGGGCGt                                                                               >  2:834596/1‑129 (MQ=255)                                                                                                      gCTGGCGCACACCGTCAACCATTGAGCCTTGTGTT‑GCTCCCATTCGCGGGCATGCCCGCTCCCACAGTAATCGCACCGCACTTAAgg                                                                                                           >  1:185592/1‑87 (MQ=255)                                                                                                      gCTGGCGCACACCGTCAACCATTGAGCCTTGTGTT‑GCTCCCATTCGCGGGCATGCCCGCTCCCACAGTAATCGCACCGCACTTAAgg                                                                                                           <  2:185592/87‑1 (MQ=255)                                                                                                      gCTGGCGCACACCGTCAACCATTGAGCCTTGTGTT‑GCTCCCATTCGCGGGCATGCCCGCTCCCACAGTAATCGCACCGCACTTAAGGCCTGTGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAAATCTAACTGCCTTCGCCCGCCATg                                            <  1:818051/150‑1 (MQ=255)                                                                                                            catcacCGACAACCATTGAGCCTTGTGTT‑GCTCCCATTCGCGGGCATGCCCGCTCCCACAGTAATCGCACCGCACTTAAGGCCTGTGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAAATCTAACTGCCTTCGCCCGCCATGcgccgc                                      <  2:1049323/147‑1 (MQ=255)                                                                                                                atcGTCAACCATTGAGCCTTGTGTT‑GCTCCCATTCGCGGGCATGCCCGCTCCCACAGTAATCGCACCGCACTTAAGGCCTGTGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAAATCTAACTGCCTTCGCCCGCCATGCGCCGCTCAt                                  >  1:651097/3‑150 (MQ=255)                                                                                                                acCGTCAACCATTGAGCCTTGTGTT‑GCTCCCATTCGCGGGCATGCCCGCTCCCACAGTAATCGCACCGCACTTAAGGCCTGTGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAAATCTAACTGCCTTCGCCCGCCATGCGCCGCTCAt                                  >  1:1188588/1‑150 (MQ=255)                                                                                                                    tCAACCATTGAGCCTTGTGTT‑GCTCCCATTCGCGGGCATGCCCGCTCCCACAGTAATCGCACCGCACTTAAGGCCTGTGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAAATCTAACt                                                            >  2:239076/1‑120 (MQ=255)                                                                                                                    tCAACCATTGAGCCTTGTGTT‑GCTCCCATTCGCGGGCATGCCCGCTCCCACAGTAATCGCACCGCACTTAAGGCCTGTGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAAATCTAACt                                                            <  1:239076/120‑1 (MQ=255)                                                                                                                          ggcgggcgaaggcagttagatttTTCGCGGGCATGCCCGCTCCCACAGTAATCGCACCGCACTTAAGGCCTGTGCAGTACCTGTGGGAGCg                                                                                    <  2:143887‑M1/68‑1 (MQ=255)                                                                                                                          ggcgggcgaaggcagttagatttTTCGCGGGCATGCCCGCTCCCACAGTAATCGCACCGCACTTAAGGCCTGTGCAGTACCTGTGGGAGCg                                                                                    >  1:143887‑M1/24‑91 (MQ=255)                                                                                                                                ccTTGTGTT‑GCTCCCATTCGCGGGCATGCCCGCTCCCACAGTAATCGCACCGCACTTAAGGCCTGTGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAAATCTAACTGCCTTCGCCCGCCATGCGCCGCTCATGCTGGAACTTCCAgcg                  >  2:450450/1‑150 (MQ=255)                                                                                                                                 cTTGTGTT‑GCTCCCATTCGCGGGCATGCCCGCTCCCACAGTAATCGCACCGCACTTAAGGCCTGTGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAAATCTAACTGCCTTCGCCCGCCATGCGCCGCTCATGCTGGAACTTCCAgcgc                 >  2:123943/1‑150 (MQ=255)                                                                                                                                  ttGTGTT‑GCTCCCATTCGCGGGCATGCCCGCTCCCACAGTAATCGCACCGCACTTAAGGCCTGTGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAAAATATACTGCCTTCGCCCGCCATGCGCCGCTCATGCTGGAACTTCCAGCGCa                >  1:379216/1‑150 (MQ=255)                                                                                                                                   tgtgTT‑GCTCCCATTCGCGGGCATGCCCGCTCCCACAGTAATCGCACCGCACTTAAGGCCTGTGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAAATCTAACTGCCTTCGCCCGCCATGCGCCGCTCATGCTGGAACTTCCAGCGCAc               <  2:651097/150‑1 (MQ=255)                                                                                                                                       tt‑GCTCCCATTCGCGGGCATGCCCGCTCCCACAGTAATCGCACCGCACTTAAGGc                                                                                                          >  1:1190573/1‑55 (MQ=255)                                                                                                                                       tt‑GCTCCCATTCGCGGGCATGCCCGCTCCCACAGTAATCGCACCGCACTTAAGGc                                                                                                          <  2:1190573/55‑1 (MQ=255)                                                                                                                                       tt‑GCTCCCATTCGCGGGCATGCCCGCTCCCACAGTAATCGCACCGCACTTAAGGCCTGTGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAAATCTAACTGCCTTCGCCCGCCATGCGCCGCTCATGCTGGAACTTCCAGCGCACGTAc           >  2:376051/1‑150 (MQ=255)                                                                                                                                            tCCCATTCGCGGGCATGCCCGCTCCCACAGTAATCGCACCGCACTTAAGGCCTGTGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAAATCTAACTGCGTTCGCCCGCCATGTGCCGCTCATGCTGGAACTTCCAGCGCACGTACAGTa       >  1:369193/1‑150 (MQ=255)                                                                                                                                            tCCCATTCGCGGGCATGCCCGCTCCCACAGTAATCGCACCGCACTTAAGGCCTGTGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAAATCTAACTGCCTTCGCCCGCCATGCGCCGCTCATGCTGGAACTTCCAGCGCACGTACAGTa       >  2:151102/1‑150 (MQ=255)                                                                                                                                            tCCCATTCGCGGGCATGCCCGCTCCCACAGTAATCGCACCGCACTTAAGGCCTGTGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAAATCTAACTGCCTTCGCCCGCCATGCGCCGCTCATGCTGGAACTTCCAGCGCACGTAAAGTa       >  2:1084550/1‑150 (MQ=255)                                                                                                                                             cccATTCGCGGGCATGCCCGCTCCCACAGTAATCGCACCGCACTTAAGGCCTGTGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAAATCTAACTGCCTTCGCCCGCCATGCGCCGCTCATGCTGGAACTTCCAGCGCACGTACAGTAg      >  2:885353/1‑150 (MQ=255)                                                                                                                                              ccATTCGCGGGCATGCCCGCTCCCACAGTAATCGCACCGCACTTAAGGCCTGTGCAGTACCTGTgg                                                                                         >  2:333128/1‑66 (MQ=255)                                                                                                                                              ccATTCGCGGGCATGCCCGCTCCCACAGTAATCGCACCGCACTTAAGGCCTGTGCAGTACCTGTgg                                                                                         <  1:333128/66‑1 (MQ=255)                                                                                                                                                aTTCGCGGGCATGCCCGCTCCCACAGTAATCGCACCGCACTTAAGGCCTGTGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAAATCTAACTGCCTTCGCCCGCCATGCGCCGCTCATGCTGGAACTTCCAGCGCACGTACAGTAGccc   >  2:1150771/1‑150 (MQ=255)                                                                                                                                                 TTCGCGGGCATGCCCGCTCCCACAGTAATCGCACCGCACTTAAGGCCTGTGCAGTACCTGTGGGAGCGGGCGTGACCGCGAAAAATCTAACTGCCTTCGCCCGCCATGCGCCGCTCATGCTGGAACTTCCAGCGCACGTACAGTAGCCCg  >  1:871831‑M1/1‑150 (MQ=255)                                                                                                                                                 |                                                                                                                                                      GACAAGCAGCCAACCAGCCAGCGCGACCTGGCTCTGGTGCAGCAGGCGTTCAACCAGTGGCATGCAGAGAGCGGGCGGCCGCTGTGCCAGTTGTCGGTGATGCTGGCGCACACCGTCAACCATTGAGCCTTGTGTT‑GCTCCCATTCGCGGGCATGCCCGCTCCCACAGTAATCGCACCGCACTTAAGGCCTGTGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAAATCTAACTGCCTTCGCCCGCCATGCGCCGCTCATGCTGGAACTTCCAGCGCACGTACAGTAGCCCG  >  NC_002947/1837970‑1838262

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.