| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4852498 | 18 (0.400) | 5 (0.170) | 5/166 | NT | 33.3% | intergenic (‑124/+173) | recR/ybaB | recombination protein RecR/nucleoid‑associated broad specificity regulator |
| ? | NC_002947 | = 4852557 | 8 (0.260) | intergenic (‑183/+114) | recR/ybaB | recombination protein RecR/nucleoid‑associated broad specificity regulator | |||||
TGGCGGATGAGAGGGCTGAAGCTCATGGGAAAGGCCTGACAATTCAATAAGAGGCGGTTTATACCCAGCGGGGGCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCTGCGAAGCAGCCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCGCAACTGGGTTGAAATCTCCGCAAAAAAAACCGCCACTGTTGTCAGC > NC_002947/4852349‑4852645 | tGGCGGATGAGAGGGCTGAAGCTCATGGGAAAGGCCTGACAATTCAATAAGAGGCGGTTTATACCCAGCGGGGGCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGG < 1:988693‑M1/150‑1 (MQ=255) ggCTGAAGCTCATGGGAAAGGCCTGACAATTCAATAAGAGGCGGTTTATACCCAGCGGGGGCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCTGCGAAGCAGcc > 2:308648/1‑150 (MQ=255) tGAAGCTCATGGGAAAGGCCTGACAATTCAATAAGAGGCGGTTTATACCCAGCGGGGGCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCTGCTTCGCAGccctt > 2:518115/1‑148 (MQ=255) tCATGGGAAAGGCCTGACAATTCAATAAGAGGCGGTTTATACCCAGCGGGGGCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGgcgcgaagcggccccgggattt > 1:268500‑M1/1‑128 (MQ=255) gAAAGGCCTGACAATTCAATAAGAGGCGGTTTATACCCAGCGGGGGCGGTGGCGTCAAATCACCTCGCCCAAAGCCTTCAAGGTCTGCTTTTTTGTGGGAGCGGCCTTGTGCAGACATAGGGCTGCGAAGCAGCCCCGGCACTCTGtgct < 1:699208/150‑1 (MQ=255) gCCTGACAATTCAATAAGAGGCGGTTTATACCCAGCGGGGGCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCTGCGAAGCAGCCCCGGCACTCTGTGCTGCGaa < 2:308878/150‑1 (MQ=255) cTGACAATTCAATAAGAGGCGGTTTATACCCAGCGGGGGCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCTGCGAAGCAGCCCCgg > 2:202223/1‑132 (MQ=255) cTGACAATTCAATAAGAGGCGGTTTATACCCAGCGGGGGCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCTGCGAAGCAGCCCCgg < 1:202223/132‑1 (MQ=255) cTGACAATTCAATAAGAGGCGGTTTATACCCAGCGGGGGCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCTGCGAAGCAGCCCCGGCActc < 1:1008621/137‑1 (MQ=255) cTGACAATTCAATAAGAGGCGGTTTATACCCAGCGGGGGCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCTGCGAAGCAGCCCCGGCActc > 2:1008621/1‑137 (MQ=255) aaTTCAATAAGAGGCGGTTTATACCCAGCGGGGGCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGTGGGACCGGCCTTGTGTCGCGAAAGGGCTGCGAAGCAGCCCCGGCACTCTGTGCTGCGAAGCTGaaa < 2:977911/150‑1 (MQ=255) gCGGTTTATACCCAGCGGGGGCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGgcgcgaagcggccccgggatttcagcttcgcagcacagagtgccggggctgct > 2:1202206‑M1/1‑97 (MQ=255) ggTTTATACCCAGCGGGGGCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCTGCGAAGCAGCCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTc < 1:1121480/150‑1 (MQ=255) tttATACCCAGCGGGGGCGGTGGCGTCAAATCACCCCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCTGCGAAGCAGCCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTcgc < 1:308648/150‑1 (MQ=255) ttATACCCAGCGGGGGCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGgcgcgaagcggccccgggatttcagcttcgcagcacagagtgccggggctgcttcgca < 2:268500‑M1/150‑59 (MQ=255) aCCCAGCGGGGGCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCTGCGAAGCAGCCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCccc > 1:1734‑M2/1‑147 (MQ=255) aCCCAGCGGGGGCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCTGCGAAGCAGCCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCccc < 2:1734‑M2/150‑4 (MQ=255) ccAGCGGGGGCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCTGCGAAGCAGCCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTc < 2:689248/141‑1 (MQ=255) ccAGCGGGGGCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCTGCGAAGCAGCCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTc > 1:689248/1‑141 (MQ=255) cGGGGGCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGgcgcgaagcggccccgggatttcagcttcgcagcacagagtgccggggctgcttcgcagccctttcgc < 1:1202206‑M1/150‑69 (MQ=255) ggggCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGgcgcgaagcggccccgggatttcagcttcgcagcacagagtgccggggctgcttcgcagccctttcgcga < 1:881446‑M1/150‑71 (MQ=255) ggggCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCTGCGAAGCAGCCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCccctttcgcga > 1:582977‑M2/1‑139 (MQ=255) ccAAAGCCTGCAAGGTCTGCTTTTTTGTGGGAGCGGCCTTGTGACGCGAAAGGGCTGCGAAGCAGCCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCATGCccgtttcgcgccacaaggccgccccccccaaaacgag < 1:854636‑M2/150‑38 (MQ=255) tCTGCTTTTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGgcgcgaagcggccccgggatttcagcttcgcagcacagagtgccggggctgcttcgcagccctttcgc < 1:793950‑M1/107‑69 (MQ=255) tCTGCTTTTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGgcgcgaagcggccccgggatttcagcttcgcagcacagagtgccggggctgcttcgcagccctttcgc > 2:793950‑M1/1‑39 (MQ=255) ctcgttttgggggGGGCGGCCTTGTGGCGCGAAACGGgcatgaagcggccccgggatttcagcttcgcagcacagagtgccggggctgcttcgcagccctttcgcgtcacaaggccgctcccacaaaaaagcagaccttgcaggctttgg < 1:854636‑M1/146‑114 (MQ=255) cTTTTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGgcgcgaagcggccccgggatttcagcttcgcagcacagagtgccggggctgcttcgcagcccttt > 1:1162007‑M1/1‑35 (MQ=255) cTTTTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGgcgcgaagcggccccgggatttcagcttcgcagcacagagtgccggggctgcttcgcagcccttt < 2:1162007‑M1/100‑66 (MQ=255) tCGCGAAAGGGgcgcgaagcggccccgggatttcagcttcgcagcacagagtgccggggctgcttcgcagccctttcgcgacacaaggccgctcccacaaaaaagcagaccttgcaggctttgggcgaggtgatttgacgccaccgcccc > 1:582977‑M1/1‑11 (MQ=255) tCGCGAAAGGGCTGCGAAGCAGCCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCccctttcgcgacacaaggccgctcccacaaaaaagcagaccttgcaggctttgggcgaggtgatttgacgccaccgcccc < 1:881446‑M2/150‑81 (MQ=255) tCGCGAAAGGGCTGCGAAGCAGCCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCGCAACTGGGTTGAAATCTCCGCAAAAAAAACCGCCACtg > 2:622947/1‑150 (MQ=255) gcgAAAGGGCTGCGAAGCAGCCCCGGCACTCTGTGCTGCGNAGCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCGCAACTGGGTTGAAATCTCCGCAAAAAAAACCGCCACtgtt > 1:1192652/1‑150 (MQ=255) gcgAAAGGGCTGCGAAGCAGCCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCccctttcgcgacacaaggccgctcccacaaaaaagcagaccttgcaggctttgggcgaggtgatttgacgccaccgcccccg < 1:1202206‑M2/150‑83 (MQ=255) gcgAAAGGGCTGCGAAGCAGCCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCccctttcgcgacacaaggccgctcccacaaaaaagcaga < 1:793950‑M2/107‑40 (MQ=255) gcgAAAGGGCTGCGAAGCAGCCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCccctttcgcgacacaaggccgctcccacaaaaaagcaga > 2:793950‑M2/1‑68 (MQ=255) gAAAGGGCTGCGAAGCAGCCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCGCAACTGGGTTGAAATCTCCGCAAAAAAAACCGCCACtgttgt > 1:1072879/1‑150 (MQ=255) aaaGGGCTGCGAAGCAGCCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCccctttcgcgacacaaggccgctcccacaaaaaag < 2:1162007‑M2/100‑36 (MQ=255) aaaGGGCTGCGAAGCAGCCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCccctttcgcgacacaaggccgctcccacaaaaaag > 1:1162007‑M2/1‑65 (MQ=255) aaaGGGCTGCGAAGCAGCCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCGCaa > 1:1006541/1‑110 (MQ=255) aaaGGGCTGCGAAGCAGCCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCGCaa < 2:1006541/110‑1 (MQ=255) ggggcgcgaagcggccccgggatttcagcttcgcagcacagagtgccggggctgcttcgcagccctttcgcgacacaaggccgctcccacaaaaaagcagaccttgcaggctttgggcgaggtgatttgacgccaccgcccccgctgggt < 2:1734‑M1/150‑148 (MQ=255) ggggcgcgaagcggccccgggatttcagcttcgcagcacagagtgccggggctgcttcgcagccctttcgcgacacaaggccgctcccacaaaaaagcagaccttgcaggctttgggcgaggtgatttgacgccaccgcccccgctgggt > 1:1734‑M1/1‑3 (MQ=255) | TGGCGGATGAGAGGGCTGAAGCTCATGGGAAAGGCCTGACAATTCAATAAGAGGCGGTTTATACCCAGCGGGGGCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCTGCGAAGCAGCCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCGCAACTGGGTTGAAATCTCCGCAAAAAAAACCGCCACTGTTGTCAGC > NC_002947/4852349‑4852645 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |