New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4957617	51 (1.130)	5 (0.130)	3/218	NT	9.9%	intergenic (‑55/+108)	fliH/fliG	flagellar assembly protein FliH/flagellar motor switch protein
	?	NC_002947	= 4957677	46 (1.160)					intergenic (‑115/+48)	fliH/fliG	flagellar assembly protein FliH/flagellar motor switch protein

CGGGTCGAAGCTTGGCAGCGTCCACACATCCACGCCCTCGAGGTCGCGGGCACGGATCAGGTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACAAAAGGCGGCGTCGGCTATGGGATCGCGAATACCTTAGATCATTTCCTCGGCGCCCTTGCCGCCGAGCACGATCTC  >  NC_002947/4957473‑4957766                                                                                                                                                 |                                                                                                                                                      cGGGTCGAAGCTTGGCAGCGTCCACACATCCACGCCCTCGAGGTCGCGGGCACGGATCAGGTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCAccc                                                                                                                                                  >  1:320108/1‑150 (MQ=255)       gAAGCTTGGCAGCGTCCACACATCCACGCCCTCGAGGTCGCGGGCACGAATCAGGTCGCTGGGGAGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAAt                                                                                                                                            >  1:877197/1‑150 (MQ=255)        aaGCTTGGCAGCGTCCACACATCCACGCCCTCGAGGTCGCGGGCACGGATCAGGTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATg                                                                                                                                           >  2:884986/1‑150 (MQ=255)                     tCCACACATCCACGCCCTCGAGGTCGCGGGCACGGATCAGGTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGAc                                                                                                                              >  1:261550/1‑150 (MQ=255)                            aTCCACGCCCTCGAGGTCGCGGGCACGGATCAGGTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCg                                                                                                                       <  2:486599/150‑1 (MQ=255)                             tCCACGCCCTCGAGGTCGCGGGCACGGATCAGGTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGa                                                                                                                      >  1:599245/1‑150 (MQ=255)                               cACGCCCTCGAGGTCGCGGGCACGGATCAGGTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGAtt                                                                                                                    >  2:482761/1‑150 (MQ=255)                                  gCCCTCGAGGTCGCGGGCACGGATCAGGTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGcc                                                                                                                 >  2:986732/1‑150 (MQ=255)                                   cccTCGAGGTCGCGGGCACGGATCAGGTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCa                                                                                                                <  2:538841/150‑1 (MQ=255)                                   cccTCGAGGTCGCGGGCACGGATCAGGTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCa                                                                                                                <  1:884986/150‑1 (MQ=255)                                       cGAGGTCGCGGGCACGGATCAGGTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGAc                                                                                                            <  2:702608/150‑1 (MQ=255)                                        gAGGTCGCGGGCACGGATCAGGTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAACCCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGAcc                                                                                                           <  2:366658/150‑1 (MQ=255)                                           gTCGCGGGCACGGATCAGGTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGAc                                                                                                        <  2:320108/150‑1 (MQ=255)                                                  gCACGGATCAGGTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTcg                                                                                                 >  1:980907/1‑150 (MQ=255)                                                  gCACGGATCAGGTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTcg                                                                                                 >  2:149522/1‑150 (MQ=255)                                                     cGGATCAGGTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCgg                                                                                              <  2:261550/150‑1 (MQ=255)                                                       gATCAGGTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGt                                                                                            >  1:373984/1‑150 (MQ=255)                                                         tCAGGTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAa                                                                                          <  2:371304‑M2/150‑2 (MQ=255)                                                           aGGTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTtacccgcgaaggcgtcggtcctggcaatcgaggttgtcgctgccgacgcattcgcgggtgaac                                                                                        <  2:294882‑M1/150‑64 (MQ=255)                                                           aGGTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAaac                                                                                        >  2:526068‑M2/1‑147 (MQ=255)                                                            ggTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAaacc                                                                                       >  1:331238‑M2/1‑146 (MQ=255)                                                             gTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAaaccc                                                                                      <  1:530664‑M2/150‑6 (MQ=255)                                                                    gggTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAaacccgctccta                                                                               >  1:482761‑M2/1‑138 (MQ=255)                                                                    gggTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAaacccgc                                                                                    <  1:590891‑M2/145‑8 (MQ=255)                                                                    gggTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAaacccgc                                                                                    >  2:590891‑M2/1‑138 (MQ=255)                                                                           gtTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACAGACGCCTTCGCGGGTAAACCCGCTCCTACAAAAgg                                                                        >  2:1057037/1‑150 (MQ=255)                                                                            ttCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACAAAAggc                                                                       <  2:877197/150‑1 (MQ=255)                                                                               tttGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACAAAAggcggc                                                                    <  1:550548/150‑1 (MQ=255)                                                                               tttGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACAAAAggcggc                                                                    >  2:358968/1‑150 (MQ=255)                                                                                   gtggGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACAAAAGGCGGCGTCg                                                                >  1:18481/1‑150 (MQ=255)                                                                                   gtggGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACAAAAGGCGGCGTCg                                                                <  1:986732/150‑1 (MQ=255)                                                                                    agggcATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTcacccgcgaaggcgtcggtcctggcaatcgaggttgtcgctgccgacgcattcgcgggtgaac                                                                                        >  2:307455‑M1/2‑62 (MQ=255)                                                                                    agggcATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTcacccgcgaaggcgtcggtcctggcaatcgaggttgtcgctgccgacgcattcgcgggtgaac                                                                                        <  1:307455‑M1/124‑64 (MQ=255)                                                                                     gggCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACAAAAGGCGGCGTCGGc                                                              <  2:1169777/150‑1 (MQ=255)                                                                                      ggCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTtacccgcgaaggcgtcggtcctggcaatcgaggttgtcgctgccgac                                                                                                        >  2:775824‑M1/1‑60 (MQ=255)                                                                                      ggCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTtacccgcgaaggcgtcggtcctggcaatcgaggttgtcgctgccgac                                                                                                        <  1:775824‑M1/107‑48 (MQ=255)                                                                                         aTGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACAAAAGGCGGCGTCGGCTATg                                                          >  1:825329/1‑150 (MQ=255)                                                                                             tGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACAAAAGGCGGCGTCGGCTATg                                                          >  2:612654/1‑146 (MQ=255)                                                                                             tGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACAAAAGGCGGCGTCGGCTATg                                                          <  1:612654/146‑1 (MQ=255)                                                                                              gTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCcgc                                                                                                                                                <  1:460647/59‑1 (MQ=255)                                                                                              gTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCcgc                                                                                                                                                >  2:460647/1‑59 (MQ=255)                                                                                               taaTGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACAAAAGGCGGCGTCGGCTATGGGATcg                                                    >  2:600343/3‑150 (MQ=255)                                                                                               tCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCgg                                                                                              >  1:314542/1‑108 (MQ=255)                                                                                               tCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCgg                                                                                              <  2:314542/108‑1 (MQ=255)                                                                                                cctGTTCTCCAGTCTTGTGCGGCGGACTCGGGCTCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACAAAAGGCGGCGTCGGCTATGGGATcgc                                                   <  2:373984/148‑1 (MQ=255)                                                                                                cATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACACCCTCGATTGCGAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACAAAAGGCGGCGTCGGCTATGGGATcgc                                                   <  2:291225/150‑1 (MQ=255)                                                                                                    ttCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTGAACCCGCTCCTACAAAAGGCGGCGTCGGCTATGGGATCGCGAAt                                               >  2:869921/1‑150 (MQ=255)                                                                                                    ttCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACAAAAgg                                                                        <  1:432446/125‑1 (MQ=255)                                                                                                    ttCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACAAAAgg                                                                        >  2:432446/1‑125 (MQ=255)                                                                                                    ttCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACAAAAGGCGGCGTCGGCTATGGGATCGCGAAt                                               >  1:675983/1‑150 (MQ=255)                                                                                                         aaaCCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTACACCCGCTCCTACAAAAGGCGGCGTCGGCTATGCGATCTCGAGTACCtt                                          <  2:599245/150‑1 (MQ=255)                                                                                                         aaaCCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACAAAAggcg                                                                      <  1:1022693/122‑1 (MQ=255)                                                                                                         aaaCCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACAAAAggcg                                                                      >  2:1022693/1‑122 (MQ=255)                                                                                                              aTGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACAAAAGGCGGCGTCGGCTATGGGATCGCGAATACCTTAGATc                                     >  2:127178/1‑150 (MQ=255)                                                                                                                 ttCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGAtt                                                                                                                    >  2:625887/1‑68 (MQ=255)                                                                                                                 ttCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGAtt                                                                                                                    <  1:625887/68‑1 (MQ=255)                                                                                                                   cGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACAAAAGGCGGCGTCGGCTATGGGATCGCGAATACCTTAGATCATTTc                                <  1:149522/150‑1 (MQ=255)                                                                                                                    ggCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACAAAAGGCGGCGTCGGCTATGGGATCGCGAATACCt                                           <  1:404201/138‑1 (MQ=255)                                                                                                                    ggCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACAAAAGGCGGCGTCGGCTATGGGATCGCGAATACCt                                           >  2:404201/1‑138 (MQ=255)                                                                                                                               tCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACAAAAGGCGGCGTCGGCTATGGGATCGCGAATACCTTAGATCATTTCCTCGGCGCCCtt                    >  1:697169/1‑150 (MQ=255)                                                                                                                                 ccTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAaacccgc                                                                                    >  2:674158‑M2/1‑77 (MQ=255)                                                                                                                                 ccTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAaacccgc                                                                                    <  1:674158‑M2/84‑8 (MQ=255)                                                                                                                                  cTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACAAAAGGCGGCGTCGGCTATGGGATCGCGAATACCTTAGATCATTTCCTCGGCGCCCTTGCc                 >  2:18481‑M2/1‑149 (MQ=255)                                                                                                                                     gTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACAAAAGGCGGCGTCGGCTATGGGATCGCGAATACCTTAGATCATTTCCTCGGCGCCCTTGCcgcc              >  1:358968‑M2/1‑146 (MQ=255)                                                                                                                                      tAGGAGCGGGTTtacccgcgaaggcgtcggtcctggcaatcgaggttgtcgctgccgacgcattcgcgggtgaacccgctcctacaagggaccgtgtcggccgaacatggtttgagaacatgacagcatgcccaccaaagaacaccaccc             >  1:482761‑M1/1‑12 (MQ=255)                                                                                                                                       aGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACAAAAGGCGGCGTCGGCTATGGGATCGCGAATACCTTAGATCATTTCCTCGGCGCCCTTGCcgccga            >  2:825329‑M2/1‑144 (MQ=255)                                                                                                                                         gAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACaaaa                                                                          >  2:1153023/1‑86 (MQ=255)                                                                                                                                         gAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACaaaa                                                                          <  1:1153023/86‑1 (MQ=255)                                                                                                                                         gAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACAAAAGGCGGCGTCGGCTATGGGATCGCGAATACCTTAGATCATTTCCTCGGCGgcaagggcgccgagg          <  2:675983‑M1/150‑16 (MQ=255)                                                                                                                                         gAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACAAAAGGCGGCGTCGGCTATGGGATCGCGAATACCTTAGATCATTTCCTCGGCGCCCTTGCCGCCGAGc          >  1:903770/1‑150 (MQ=255)                                                                                                                                         gAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACAAAAGGCGGCGTCGGCTATGGGATCGCGAATACCTTAGATCATTTCCTCGGCGCCCTTGCCGCCGAGc          >  1:529835/1‑150 (MQ=255)                                                                                                                                           gCGGGTTtacccgcgaaggcgtcggtcctggcaatcgaggttgtcgctgccgacgcattcgcgggtgaacccgctcctacaagggaccgtgtcggccgaacatggtttgagaacatgacagcatgcccaccaaagaacaccaccc             >  2:590891‑M1/1‑7 (MQ=255)                                                                                                                                           gCGGGTTtacccgcgaaggcgtcggtcctggcaatcgaggttgtcgctgccgacgcattcgcgggtgaacccgctcctacaagggaccgtgtcggccgaacatggtttgagaacatgacagcatgcccaccaaagaacaccaccc             <  1:590891‑M1/145‑139 (MQ=255)                                                                                                                                           gCGGGTTtacccgcgaaggcgtcggtcctggcaatcgaggttgtcgctgccgacgcattcgcgggtgaacccgctcctacaagg                                                                          >  2:674158‑M1/1‑7 (MQ=255)                                                                                                                                           gCGGGTTtacccgcgaaggcgtcggtcctggcaatcgaggttgtcgctgccgacgcattcgcgggtgaacccgctcctacaagg                                                                          <  1:674158‑M1/84‑78 (MQ=255)                                                                                                                                             gggTTtacccgcgaaggcgtcggtcctggcaatcgaggttgtcgctgccgacgcattcgcgggtgaacccgctcctacaagggaccgtgtcggccgaacatggtttgagaacatgacagcatgcccaccaaagaacaccaccccagcgac      <  1:530664‑M1/150‑146 (MQ=255)                                                                                                                                             gggTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACAAAAGGCGGCGTCGGCTATGGGATCGCGAATACCTTAGATCATTTCCTCGGCGCCCTTGCCGCCGAGCACGa      >  1:896226/1‑150 (MQ=255)                                                                                                                                              ggTTtacccgcgaaggcgtcggtcctggcaatcgaggttgtcgctgccgacgcattcgcgggtgaacccgctcctacaagggaccgtgtcggccgaacatggtttgagaacatgacagcatgcccaccaaagaacaccaccccagcgacc     >  1:331238‑M1/1‑4 (MQ=255)                                                                                                                                               gTTtacccgcgaaggcgtcggtcctggcaatcgaggttgtcgctgccgacgcattcgcgggtgaacccgctcctacaagggaccgtgtcggccgaacatggtttgagaacatgacagcatgcccaccaaagaacaccaccccagcgacct    >  2:526068‑M1/1‑3 (MQ=255)                                                                                                                                               gTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTGaacccgctcctacaagggaccgtgtcggccgaacatggtttgagaacatgacagcatgccct                             >  2:307455‑M2/1‑63 (MQ=255)                                                                                                                                               gTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTGaacccgctcctacaagggaccgtgtcggccgaacatggtttgagaacatgacagcatgccct                             <  1:307455‑M2/125‑63 (MQ=255)                                                                                                                                               gTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAaacccgctcctacaagggaccgtgtcggccgaacatggtttgagaacatgacagcatgcccaccaaagaacaccaccccagcgacct    <  2:294882‑M2/150‑88 (MQ=255)                                                                                                                                                 ttacccgcgaaggcgtcggtcctggcaatcgaggttgtcgctgccgacgcattcgcgggtgaacccgctcctacaagggaccgtgtcggccgaacatggtttgagaacatgacagcatgcccaccaaagaacaccaccccagcgacctga  <  2:371304‑M1/150‑150 (MQ=255)                                                                                                                                                 |                                                                                                                                                      CGGGTCGAAGCTTGGCAGCGTCCACACATCCACGCCCTCGAGGTCGCGGGCACGGATCAGGTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACAAAAGGCGGCGTCGGCTATGGGATCGCGAATACCTTAGATCATTTCCTCGGCGCCCTTGCCGCCGAGCACGATCTC  >  NC_002947/4957473‑4957766

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.