New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 250236 | 36 (0.800) | 5 (0.120) | 4/228 | NT | 13.3% | coding (967/1347 nt) | nfeD | membrane bound peptidase NefD |
? | NC_002947 | = 250260 | 32 (0.770) | coding (943/1347 nt) | nfeD | membrane bound peptidase NefD |
CCGATCAGGAGTGCCGAGAGCAGCGCCAAGGTGCCGATCAAGGCCAGGGGGATGCCGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAGCGCCACCCCGGCAAAACTCACCGGCAACAGCTGCAGCGCATACAGCGCCAGCAGCAGGCAGATACCACCGACCACACCGCCCACCGCAGAACCTGGGTTCATGAATTCGA > NC_002947/250112‑250409 | ccGATCAGGAGTGCCGAGAGCAGCGCCAAGGTGCCGATCAAGGCCAGGGGGATGCCGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAg > 1:24549‑M2/1‑149 (MQ=255) tCAGGAGTGCCGAGAGCAGCGCCAAGGTGCCGATCAAGGCCAGGGGGATGCCGAACCCGGGAGCGGCGGTGTCGATCAGCATCAATGCTCCAACCACAAGGGCAACGATGGCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAggctt > 1:929425‑M2/1‑145 (MQ=255) ggAGTGCCGAGAGCAGCGCCAAGGTGCCGATCAAGGCCAGGGGGATGCCGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCACGCCGAAACTGGGTAAGAAggattcgg < 1:849751‑M2/150‑9 (MQ=255) ggAGTGCCGAGAGCAGCGCCAAGGTGCCGATCAAGGCCAGGGGGATGCCGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAggcttcgg > 2:455144‑M2/1‑142 (MQ=255) gTGCCGAGAGCAGCGCCAAGGTGCCGATCAAGGCCAGGGGGATGCCGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAGGCTTCGGCGa < 1:825797/150‑1 (MQ=255) gCCGAGAGCAGCGCCAAGGTGCCGATTAAGGCCAGGGGGATGCCGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAGGCTTCGGCGATc < 1:305486/150‑1 (MQ=255) gCCGAGAGCAGCGCCAAGGTGCCGATCAAGGCCAGGGGGATGCCGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAGGCTTCGGCGATc < 2:949074/150‑1 (MQ=255) gcagcGCCAAGGTGCCGATCAAGGCCAGGGGGATGCCGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAgg < 1:113483/150‑1 (MQ=255) gcagcGCCAAGGTGCCGATCAAGGCCAGGGGGATGCCGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAgg < 2:1183538/150‑1 (MQ=255) ggcCAAGGGGCCGAGAAAGGCCAGGGGGATGGCGAAACCGGGAGCGTCGGTGGCGATCAGGATAAATGCGCGGACCACAAAGGCAACGAGGCCGCCGAAGCGGACAACGCCGAAACGGGGCAAGAAGGCTTCGGCGATCATGAAGGTGAt < 2:209566/149‑1 (MQ=255) cAAGGTGCCGATCAAGGTCAGGGGGATGACGAAATCGGGAGCGTCTGTGTCTTTCAGGATTAATGCGCCGACAACAAAGTCAACGATGCCGCCGAAGCCGACCACGCCGAAACTGGGTAAGAAGTCTTCGGCGATCATGAAGGTGATGcc < 1:289898/150‑1 (MQ=255) aaGGTGCCGATCAAGGCCAGGGGGATGCCGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCa > 2:496369/1‑150 (MQ=255) ggTGCCGATCAAGGCCAGGGGGATGCCGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAg < 1:723654/150‑1 (MQ=255) ggTGCCGATCAAGGCCAGGGGGATGCCGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAg < 1:496369/150‑1 (MQ=255) gATCAAGGCCAGGGGGATGCCGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGAt > 2:1089934/1‑150 (MQ=255) aaGGCCAGGGGGATGCCGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAgc < 2:992832/150‑1 (MQ=255) aGGGGGATGCCGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAGCGCCAcc > 2:274184/1‑150 (MQ=255) gggATGCCGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAGCGCCACCCCg < 1:237438/150‑1 (MQ=255) aTGCCGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAGCGCCACCCCGGCa < 1:1072929/150‑1 (MQ=255) ccGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAGCGCCACCCCGGCaaaa < 2:504935/150‑1 (MQ=255) aCCGGGAGAGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAGCGCCACCCCGGCAAAACTCAc < 2:40303/150‑1 (MQ=255) cGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAGGCTTCGGCGATCAt < 1:196821/103‑1 (MQ=255) cGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAGGCTTCGGCGATCAt > 2:196821/1‑103 (MQ=255) cGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAGCGCCa > 2:355966/1‑132 (MQ=255) cGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAGCGCCa < 1:355966/132‑1 (MQ=255) cGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAGCGCCACCCCGGCAAAACTCACCg < 1:37926/150‑1 (MQ=255) cGTCGCTGTCTATCCGCACCAAGGCGCGGACCACAAAGGCAACGATGCCGCCGAAGCCGACCACGCCGAAACTGCGCAAGAAGCCTTCAGCGATGATGAAGGTGATCCCAAGCAGGATCAGCGCCACCCCGGCAAAACTCACCGGCAACa < 2:313229/150‑1 (MQ=255) ggTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAGCGCCACCCCGGCAAAACTCACCGGCAACAGCTg < 1:274184/150‑1 (MQ=255) gATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAGCGCCACCCCGGCAAAACTCACCGGCAACAGCTGCAgcgc > 1:463988/1‑150 (MQ=255) aaTGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAGCGCCACCCCGGCAAAACTCACCGGCAACAGCTGCAGCGCATACAGCGcc > 1:695366/1‑150 (MQ=255) cacaAAGGCAACGATGCCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAggcttcggcggcatcgttgcctttgtggtcggcgcattgatcctgatcgacaccgacgctcccggtttcggcatccccctggccttgatcggcaccttg < 2:646404‑M2/150‑100 (MQ=255) cacaAAGGCAACGATGCCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAggcttcggcggcatcgttgcctttgtggtcggcgcattgatcctgatcgacaccgacgctcccggtttcggcatccccctggccttgatcggcaccttg < 1:146530‑M2/150‑100 (MQ=255) acaAAGGCAACGATGCCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAGCGCCACCCCGGCAAAACTCACCGGCAACAGCTGCAGCGCATACAGCGCCAGCAgcaggcag > 1:1065193/1‑150 (MQ=255) acaAAGGCAACGATGCCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAGCGCCACCCCGGCAAAACTCACCGGCAACAGCTGCAGCGCATACAGCGCCAGCAgcaggcag > 2:380151/1‑150 (MQ=255) acaAAGGCAACGATGCCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAGCGCCACCCCGGCAAAACTCACCGGCAACAGCTGCAGCGCATACAGCGCCAGCAgcagg > 1:758795/1‑147 (MQ=255) acaAAGGCAACGATGCCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAGCGCCACCCCGGCAAAACTCACCGGCAACAGCTGCAGCGCATACAGCGCCAGCAgcagg < 2:758795/147‑1 (MQ=255) caAAGGCAACGATGCCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAggcttcggcggcatcgttgcctttgtggtcggcgcattgatcctgatcgacaccgacgctcccggtttcggcatccccctggccttgatcggcaccttggc > 2:146530‑M2/1‑49 (MQ=255) aGGCAACGATGCCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAGCGCCACCCCGGCAAAACTCACCGGCAACAGCTGCAGCGCATACAGCGCCAGCAGCAGGCAGATac < 2:463988/150‑1 (MQ=255) aaCGATGCCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAGCGCCACCCCGGCAAAACTCACCGGCAACAGCTGCAGCGCATACAGCGCCAGCAGCAGGCAGATaccacc > 2:668841/1‑150 (MQ=255) aaCGATGCCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAGCGCCACCCCGGCAAAACTCACCGGCAACAGCTGCAGCGCATACAGCGCCAGCAGCAGGCAGATaccacc > 2:955786/1‑150 (MQ=255) ccgAAGCCGACCACGCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAGCGCCACCCCGGCAAAACTCACCGGCAACAGCTGCAGCGCATACAGCGCCAGCAGCAGGCAGATACCACCGACCACACCg > 1:355127/1‑150 (MQ=255) cgAAGCCGACCACGCCGAAACTGGGCAAGAAggcttcggcggcatcgttgcctttgtggtcggcgcattgatcctgatcgacaccgacgctcccggtttcggcatccccctggccttgatcggcaccttggcgctgctctcggcactcct < 1:676336‑M2/150‑120 (MQ=255) gCCGACCACGCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAGCGCCACCCCGGCAAAACTCACCGGCAACAGCTGCAGCGCATACAGCGCCAGCAGCAGGCAGATACCACCGACCACACCGCCCAc < 1:650036/150‑1 (MQ=255) cGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAGCGCCACCCCGGCAAAACTCACCGGCAACAGCTGCAGCGCATACAGCGCCAGCAGCAGGCAGATACCACCGACCACACCGCCCACCGCAGAACCTg < 1:862470/150‑1 (MQ=255) aaaCTGGGCAAGAAggcttcggcggcatcgttgcctttgtggtcggcgcattgatcctgatcgacaccgacgctcccggtttcggcatccccctggccttgatcggcaccttggcgctgctctcggcactcctgatcggtggcgtgctgg > 1:646404‑M2/1‑14 (MQ=255) ggCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAGCGCCACCCCGGCAAAACTCACCGGCAACAGCTGCAGCGCATACAGCGCCAGCAGCAGGCAGATACCACCGACCACACCGCCCACCGCAGAACCTGGGTTCATg < 1:1089934/150‑1 (MQ=255) agaagGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAGCGCCACCCCGGCAAAACTCACCGGCAACAGCTGCAGCGCATACAGCGCCAGCAGCAGGCAGATACCACCGACCACACCGCCCACCGCAGAACCTGGGTTCATGAAtt < 2:849751/150‑1 (MQ=255) gaagGCTTCGGCGAGTATGAAGGTGATGCCAAGCAGGATCAGCGCCACCCCGGCAAAACTCACCGGGTACTGCTGCAGCGCATACAGCGCCAGCAGCAGGCAGATACCACCGACCACACCGCCCACCGCAGAACCTGGGTTCATGAATTc < 1:380151/150‑1 (MQ=255) aggcttcggcggcatcgttgcctttgtggtcggcgcattgatcctgatcgacaccgacgctcccggtttcggcatccccctggccttgatcggcaccttggcgctgctctcggcactcctgatcggtggcgtgctgggcatggctctcaa > 2:676336‑M2/1‑1 (MQ=255) agGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAGCGCCACCCCGGCAAAACTCACCGGCAACAGCTGCAGCGCATACAGCGCCAGCAGCAGGCAGATACCACCGACCACACCGCCCACCGCAGAACCTGGGTTCATGAATTCGa < 2:1065193/150‑1 (MQ=255) | CCGATCAGGAGTGCCGAGAGCAGCGCCAAGGTGCCGATCAAGGCCAGGGGGATGCCGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAGCGCCACCCCGGCAAAACTCACCGGCAACAGCTGCAGCGCATACAGCGCCAGCAGCAGGCAGATACCACCGACCACACCGCCCACCGCAGAACCTGGGTTCATGAATTCGA > NC_002947/250112‑250409 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |