New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	344650 =	38 (0.840)	6 (0.140)	6/242	NT	14.1%	coding (956/1068 nt)	mutY	A/G‑specific adenine glycosylase
	?	NC_002947	344698 =	36 (0.820)					coding (908/1068 nt)	mutY	A/G‑specific adenine glycosylase

CTGCGATCAGTTCGTCGGCCGCGCGTTCAAGCAGCTTTTTCACCGGGGCGGCGAGGCCCAGGCGCGGCGGGGTGGCGAG‑GTTATACCAGAGCCAGTCGGCCTCGGCCACGTGCTCGCCGACCGGGTCGACGTGCACGAGCCATGGCTCGATCGCCAGCTGGAAGTGGCTGAAGGTATGGGTCAGGCCGTCCATGGCGTGGCGGCCAGCCAGGCGCAGGCCGTGCTGGTAGGCCAGGTCGTCGAGCTGGGCGATGTCGTCCAGCTCCGGGAGGCTCCACAAACCACCCCACAGGCC  >  NC_002947/344552‑344846                                                                                                                                                    |                                                                                                                                                     cTGCGATCAGTTCGTCGGCCGCGCGTTCAAGCAGCTTTTTCACCGGGGCGGCGAGGCCCAGGCGCGGCGGGGTGGCGAG‑GTTGTACCAGAGCCAGTCGGCCTCGGCCACGTGCTCGCCGACCGGGTCGACGTGCACGAGCCATGGCTCGa                                                                                                                                                   >  2:586159/1‑150 (MQ=255) cTGCGATCAGTTCGTCGGCCGCGCGTTCAAGCAGCTTTTTCACCGGGGCGGCGAGGCCCAGGCGCGGCGGGGTGGCGAG‑GTTATACCAGAGCCAGTCGGCCTCGGCCACGTGCTCGCCGACCGGGTCGACGTGCACGAGCCATGGCTCGa                                                                                                                                                   >  2:123963/1‑150 (MQ=255)    cgacgacctggcctaccagcacggcctgcgcctggctggccgccacgccatggacggcctgacccataccttcagccacttccagctggcgatcgaGCCTCGGCCACGTGCTCGCCGACCGGGTCGACGTGCACGAGCCATGGCTCGATc                                                                                                                                                 >  2:502629‑M1/97‑150 (MQ=255)              gtcgGCCGCGCGTTCAAGCAGCTTTTTCACCGGGGCGGCGAGGCCCAGGCGCGGCGGGGTGGCGAG‑GTTATACCAGAGCCAGTCGGCCTCGGCCACGTGCTCGCCGACCGGGTCGACGTGCACGAGCCATGGCTCGATCGCCAGCTGGaa                                                                                                                                      <  1:708472/150‑1 (MQ=255)                  accagcacggcctgcgcctggctggccgccacgccatggacggcctgacccataccttcagccacttccagctggcgatcgaGCCTCGGCCACGTGCTCGCCGACCGGGTCGACGTGCACGAGCCATGGCTCGa                                                                                                                                                   >  2:563227‑M1/83‑134 (MQ=255)                  accagcacggcctgcgcctggctggccgccacgccatggacggcctgacccataccttcagccacttccagctggcgatcgaGCCTCGGCCACGTGCTCGCCGACCGGGTCGACGTGCACGAGCCATGGCTCGa                                                                                                                                                   <  1:563227‑M1/52‑1 (MQ=255)                   ccGCGCGTTCAAGCAGCTTTTTCACCGGGGCGGCGAGGAAAAGGCGCGGCGGGGTGGCGAG‑GTTATACCAGAGCCAGTCGGCCTCGGCCACGTGCTCGCCGACCGGGTCGACGTGCACGAGCCATGGCTCGATCGCCAGCTGGAAGTGGc                                                                                                                                 <  1:616335/150‑1 (MQ=255)                         gTTCAAGCAGCTTTTTCACCGGGGCGGCGAGGCCCAGGCGCGGCGGGGTGGCGAG‑GTTATACCAGAGCCAGTCGGCCTCGGCCACGTGCTCGCCGACCGGGTCGACGTGCACGAGCCATGGCTCGATCGCCAGCTGGAAGTGGCTGAAgg                                                                                                                           >  2:762325/1‑150 (MQ=255)                             aaGCAGCTTTTTCACCGGGGCGGCGAGGCCCAGGCGCGGCGGGGTGGCGAG‑GTTATACCAGCGCCAGTCGGCCTCGGCCACGTGCTCGCCGACCGCGTCGACGTGCACGAGCCATGGCTCGATCGCCAGCTGGAAGTGGCTGaacatgat                                                                                                                       <  2:100299/150‑7 (MQ=255)                              agcagcTTTTTCACCGGGGCGGCGAGGCCCAGGCGCGGCGGGGTGGCGAG‑GTTATACCAGAGCCAGTCGGCCTCGGCCACGTGCTCGCCGACCGGGTCGACGTGCACGAGCCATGGCTCGATCGCCAGCTGGAAGTGGCTGAAGGTATgg                                                                                                                      <  2:746405/150‑1 (MQ=255)                              agcagcTTTTTCACCGGGGCGGCGAGGCCCAGGCGCGGCGGGGTGGCGAG‑GTTATACCAGAGCCAGTCGGCCTCGGCCACGTGCTCGCCGACCGGGTCGACGTGCACGAGCCATGGCTCGATCGCCAGCTGGAAGTGGCTGAAGGTATgg                                                                                                                      <  2:1096209/150‑1 (MQ=255)                                 agcTTTTTCACCGGGGCGGCGAGGCCCAGGCGCGGCGGGGTGGCGAG‑GTTATACCAGAGCCAGTCGGCCTCGGCCACGTGCTCGCCGACCGGGTCGACGTGCACGAGCCATGGCTCGATCGCCAGCTGGAAGTGGCTGAAGGTATGGGTc                                                                                                                   <  1:123963/150‑1 (MQ=255)                                    tttttCACCGGGGCGGCGAGGCCCAGGCGCGGCGGGGTGGCGAG‑GTTATACCAGAGCCAGTCGGCCTCGGCCACGTGCTCGCCGACCGGGTCGACGTGCACGAGCCATGGCTCGATCGCCAGCTGGAAGTGGCTGAAGGTATGGGTCAg                                                                                                                 <  1:1180920/149‑1 (MQ=255)                                    tttttCACCGGGGCGGCGAGGCCCAGGCGCGGCGGGGTGGCGAG‑GTTATACCAGAGCCAGTCGGCCTCGGCCACGTGCTCGCCGACCGGGTCGACGTGCACGAGCCATGGCTCGATCGCCAGCTGGAAGTGGCTGAAGGTATGGGTCAg                                                                                                                 >  2:1180920/1‑149 (MQ=255)                                    tttttCACCGGGGCGGCGAGGCCCAGGCGCGGCGGGACGG‑GAGTTTTATACCAGAGCCAGTCGGCCTCGGCCACGTGCTCGCCGACCGGGTCGACGTGCACGAGCCATGGCTCGATCGCCAGCTGGAAGTGGCTGAAGGTATGGGTCAgg                                                                                                                <  1:616619/150‑1 (MQ=255)                                                         cccAGGCGCGGCGGGGTGGCGAG‑GTTATACCAGAGCCAGTCGGCCTCGGCCACGTGCTCGCCGACCGGGTCGACGTGCACGAGCCATGGCTCGATCGCCAGCTGGAAGTGGCTGAAGGTATGGGTCAGGCCGTCCATGGCGTGGCGgcca                                                                                           <  2:985008/150‑1 (MQ=255)                                                         cccAGGCGCGGCGGGGTGGCGAG‑GTTATACCAGAGCCAGTCGGCCTCGGCCACGTGCTCGCCGACCGGGTCGACGTGCACGAGCCATGGCTCGATCGCCAGCTGGAAGTGGCTGAAGGTATGGGTCAGGCCGTCCATGGCGTGGCGgcca                                                                                           <  1:463892/150‑1 (MQ=255)                                                                             gAG‑GTTATACCAGAGCCAGTCGGCCTCGGCCACGTGCTCGCCGACCGGGTCGACGTGCACGAGCCATGGCTCGATCGCCAGCTGGAAGTGGCTGAAGGTATGGGTCAGGCCGTCCATGGCGTGGTGGCCAGCCAGGCGCAGGCCGTGCTg                                                                       >  1:631438/1‑150 (MQ=255)                                                                             gAG‑GTTATACCAGAGCCAGTCGGCCTCGGCCACGTGCTCGCCGACCGGGTCGACGTGCACGAGCCATGGCTCGATCGCCAGCTGGAAGTGGCTGAAGGTATGGGTCAGGCCGTCCATGGCGTGGCGGCCAGCCAGGCGCAGGCCGTGCTg                                                                       <  1:762325/150‑1 (MQ=255)                                                                             gAG‑GTTATACCAGAGCCAGTCGGCCTCGGCCACGTGCTCGCCGACCGGGTCGACGTGCACGAGCCATGGCTCGATCGCCAGCTGGAAGTGGCTGAAGGTATGGGTCAGGCCGTCCATGGCGTGGCGGCCAGCCAGGCGCAGGCCGTGCTg                                                                       >  2:438386/1‑150 (MQ=255)                                                                                 gTTATACCAGAGCCAGTCGGCCTCGGCCACGTGCTCGCCGACCGGGTCGACGTGCACGAGCCATGGCTCGATCGCCAGCTGGAAGTGGCTGAAGGTATGGGTCAGGCCGTCCATGGCGTGGCGGCCAGCCAGGCGCAgg                                                                               >  1:168451/1‑139 (MQ=255)                                                                                 gTTATACCAGAGCCAGTCGGCCTCGGCCACGTGCTCGCCGACCGGGTCGACGTGCACGAGCCATGGCTCGATCGCCAGCTGGAAGTGGCTGAAGGTATGGGTCAGGCCGTCCATGGCGTGGCGGCCAGCCAGGCGCAgg                                                                               <  2:168451/139‑1 (MQ=255)                                                                                      aCCAGAGCCAGTCGGCCTCGGCCACGTGCTCGCCGACCGGGTCGACGTGCACGAGCCATGGCTCGATCGCCAGCTGGAAGTGGCTGAAGGTATGGGTCAGGCCGTCCATGGCGTGGCGGCCAGCCAGGCGCAGGCCGTGCTGGTAGGCCa                                                               >  1:908755/1‑150 (MQ=255)                                                                                      aCCAGAGCCAGTCGGCCTCGGCCACGTGCTCGCCGACCGGGTCGACGTGCACGAGCCATGGCTCGATCGCCAGCTGGAAGTGGCTGAAGGTATGGGTCAGGCCGTCCATGGCGTGGCGGCCAGCCAGGCGCAGGCCGTGCTGGTAGGCCa                                                               >  1:452695/1‑150 (MQ=255)                                                                                       ccAGAGCCAGTCGGCCTCGGCCACGTGCTCGCCGACCGGGTCGACGTGCACGAGCCATGGCTCGATCGCCAGCTGGAAGTGGCTGAAGGTATGGGTCAGGCCGTCCATGGCGTGGCGGCCAGCCAGGCGCAGGCCGTGCTGGTAGGCCan                                                              <  2:650905/150‑2 (MQ=255)                                                                                        cAGAGCCAGTCGGCCTCGGCCACGTGCTCGCCGACCGGGTCGACGTGCACGAGCCATGGCTCGATCGCCAGCTGGAAGTGGCTGAAGGTATGGGTCAGGCCGTCCATGGCGTGGCGGCCAGCCAGGCGCAGGCCGTGCTGGTAGGCCa                                                               <  1:1203436/148‑1 (MQ=255)                                                                                        cAGAGCCAGTCGGCCTCGGCCACGTGCTCGCCGACCGGGTCGACGTGCACGAGCCATGGCTCGATCGCCAGCTGGAAGTGGCTGAAGGTATGGGTCAGGCCGTCCATGGCGTGGCGGCCAGCCAGGCGCAGGCCGTGCTGGTAGGCCa                                                               >  2:1203436/1‑148 (MQ=255)                                                                                        cAGAGCCAGTCGGCCTCGGCCACGTGCTCGCCGACCGGGTCGACGTGCACGAGCCATGGCTCGATCGCCAGCTGGAAGTGGCTGAAGGTATGGGTCAGGCCGTCCATGGCGTGGCGGCCAGCCAGGCGCAGGCCGTGCTGGTAGGCCAgg                                                             >  1:26573/1‑150 (MQ=255)                                                                                              gatcgagccatggctcgtgcacgtcgacccggtcggcgagcacgtggccgaggcTCGATCGCCAGCTGGAAGTGGCTGAAGGTATGGGTCAGGCCGTCCATGGCGTGGCGGCCAGCCAGGCGCAGGCCGTGCTGGTAGGCCAGGtcgtcg                                                       >  2:502629‑M2/55‑150 (MQ=255)                                                                                                tcgagccatggctcgtgcacgtcgacccggtcggcgagcacgtggccgaggcTCGATCGCCAGCTGGAAGTGGCTGAAGGTATGGGTCAGGCCGTCCATGGCGTGGCGGCCAGCCAGGCGCAGGCCGTGCTGGt                                                                     <  1:563227‑M2/82‑1 (MQ=255)                                                                                                tcgagccatggctcgtgcacgtcgacccggtcggcgagcacgtggccgaggcTCGATCGCCAGCTGGAAGTGGCTGAAGGTATGGGTCAGGCCGTCCATGGCGTGGCGGCCAGCCAGGCGCAGGCCGTGCTGGt                                                                     >  2:563227‑M2/53‑134 (MQ=255)                                                                                                    gcctcggccACGGGCTCGCCGACCGGGTCGACGTGCACGAGACCTGGGTCCCTCGCCACCGGGAAGTGGCTGAAGGTATGGGTCAGGCCGTCCATGGCGTGGCGGCCAGCCAGGCGCAGGCCGTGCCGCCAGGCCCGGCCCTCAAGCTgg                                                 >  2:347706/1‑150 (MQ=255)                                                                                                    GCCTCGGCCACGTGCTCGCCGACCGGGTCGACGTGCACGAGCCATGGCTCGATCGCCAGCTGGAAGTGGCTGAAGGTATGGGTCAGGCCGTCCATGGCGTGGCGGCCAGCCAGGCGCAGGCCGTGCTGGTAGGCCAGGTCGTCGAGCTgg                                                 >  2:1049978‑M1/1‑150 (MQ=255)                                                                                                     CCTCGGCCACGTGCTCGCCGACCGGGTCGACGTGCACGAGCCATGGCTCGATCGCCAGCTGGAAGTGGCTGAAGGTATGGGTCAGGCCGTCCATGGCGTGGCGGCCAGCCAGGCGCAGGCCGTGCTGGTAGGCCAGGTCGTCGAGCTggg                                                <  1:1170755‑M1/150‑1 (MQ=255)                                                                                                     CCTCGGCCACGTGCTCGCCGACCGGGTCGACGTGCACGAGCCATGGCTCGATCGCCAGCTGGAAGTGGCTGAAGGTATGGGTCAGGCCGTCCATGGCGTGGCGGCCAGCCAGGCGCAGGCCGTGCTGGTAGGCCAGGTCGTAGAGCTggg                                                <  1:857250‑M1/150‑1 (MQ=255)                                                                                                      CTCGGCCACGTGCTCGCCGACCGGGTCGACGTGCACGAGCCATGGCTCGATCGCCAGCTGGAAGTGGCTGAAGGTATGGGTCAGGCCGTCCATGGCGTGGCGGCCAGCCAGGCGCAGGCCGTGCTGGTAGGCCAGGTCGTCGAGCTGGGc                                               >  2:908755‑M1/1‑150 (MQ=255)                                                                                                          gccACGTGCTCGCCGACCGGGTCGACGTGCACGAGCCATGGCTCGATCGCCAGCTGGAAGTGGCTGAAGGTATGGGTCAGGCCGTCCATGGCGTGGCGGCCAGCCAGGCGCAGGCCGTGCTGGTAGGCCAGGTCGTCGAGCTGGGCGATg                                           <  2:452695/150‑1 (MQ=255)                                                                                                           gctcgtgcacgtcgacccggtcggcgagcacgagccatggcTCGATCGCCAGCTGGAAGTGGCTGAAGGTATGGGTCAGGCCGTCCATGGCGTGGCGGCCAGCCAGGCGCAGGCCGTGCTGGTAGGCCa                                                               >  2:705610‑M2/42‑129 (MQ=255)                                                                                                           gctcgtgcacgtcgacccggtcggcgagcacgagccatggcTCGATCGCCAGCTGGAAGTGGCTGAAGGTATGGGTCAGGCCGTCCATGGCGTGGCGGCCAGCCAGGCGCAGGCCGTGCTGGTAGGCCa                                                               <  1:705610‑M2/88‑1 (MQ=255)                                                                                                             aCGTGCTCGCCGACCGGGTCGACGTGCACGAGCCATGGCTCGATCGCCAGCTGGAAGTGGCTGAAGGTATGGGTCAGGCCGTCCATGGCGTGGCGGCCAGCCAGGCGCAGGCCGTGCTGGTAGGCCAGGTCGTCGAGCTGGGCGCTgtcg                                        >  2:373699/1‑150 (MQ=255)                                                                                                             aCGTGCTCGCCGACCGGGTCGACGTGCACGAGCCATGGCTCGATCGCCAGCTGGAAGTGGCTGAAGGTATGGGTCAGGCCGTCCATGGCGTGGCGGCCAGCCAGGCGCAGGCCGTGCTGGTAGGCCAGGTCGTCGAGCTGGGCGATgtcg                                        >  1:201360/1‑150 (MQ=255)                                                                                                               gtgcacgtcgacccggtcggcgagcacgagccatggcTCGATCGCCAGCTGGAAGTGGCTGAAGGTATGGGTCAGGCCGTCCATGGCGTGGCGGCCAGCCAGGCGCAGGCCGTGCTGGTAGGCCAGGTCGTCGAGCTGGGCGATgtcgtc                                      >  2:802182‑M2/38‑150 (MQ=255)                                                                                                                              gTCGACGTGCACGAGCCATGGCTCGATCGCCAGCTGGAAGTGGCTGAAGGTATGGGTCAGGCCGTCCATGGCGTGGCGGCCAGCCAGGCGCAGGCCGTGCTGGTAGGCCAGGTCGTCGAGCTGGGCGATGTCGTCCAGCTCCGGGAGGCt                       >  2:1017716/1‑150 (MQ=255)                                                                                                                                 gACGTGCACGAGCCATGGCTCGATCGCCAGCTGGAAGTGGCTGAAGGTATGGGTCAGGCCGTCCATGGCGTGGCGGCCAGCCAGGCGCAGGCCGTGCTGGTAGGCCAGGTCGTCGAGCTGGGCGATGTCGTCCAGCTCCGGGAGGCTCca                    <  1:586159/150‑1 (MQ=255)                                                                                                                                    gTGCACGAGCCATGGCTCGATCGCCAGCTGGAAGTGGCTGAAGGTATGGGTCAGGCCGTCCATGGCGTGGCGGCCAGCCAGGCGCAGGCCGTGCTGGTAGGCCAGGTCGTCGAGCTGGGCGATGTCGTCCAGCTCCGGGAGGCTCCACaa                 >  1:308143/1‑150 (MQ=255)                                                                                                                                      gCACGAGCCATGGCTCGATCGCCAGCTGGAAGTGGCTGAAGGTATGGGTCAGGCCGTCCATGGCGTGGCGGCCAGCCAGGCGCAGGCCGTGCTGGTAGGCCAGGTCGTCGAGCTGGGCGATGTCGTCCAGCTCCGGGAGGCTCCACAAac               <  1:438386/150‑1 (MQ=255)                                                                                                                                       atcGAGCCATGGCTCGATCGCCAGCTGGAAGTGGCTGAAGGTATggg                                                                                                                     <  2:228885/45‑1 (MQ=255)                                                                                                                                       atcGAGCCATGGCTCGATCGCCAGCTGGAAGTGGCTGAAGGTATggg                                                                                                                     >  1:228885/3‑47 (MQ=255)                                                                                                                                        aCGAGCCATGGCTCGATCGCCAGCTGGAAGTGGCTGAAGGTATGGGTCAGGCCGTCCATGGCGTGGCGGCCAGCCAGGCGCAGGCCGTGCTGGTAGGCCAGGTCGTCGAGCTgg                                                 <  1:106838/114‑1 (MQ=255)                                                                                                                                        aCGAGCCATGGCTCGATCGCCAGCTGGAAGTGGCTGAAGGTATGGGTCAGGCCGTCCATGGCGTGGCGGCCAGCCAGGCGCAGGCCGTGCTGGTAGGCCAGGTCGTCGAGCTgg                                                 >  2:106838/1‑114 (MQ=255)                                                                                                                                         cGAGCCATGGCTCGATCGCCAGCTGGAAGTGGCTGAAGGTATGGGTCAGGCCGTCCATGGCGTGGTGGCCAGCCAGGCGCAGGCCGTGCTGGTAGGCCAGGTCGTCGAGCTGGGCGATGTCGTCCAGCTCCGGGAGGCTCCACAAaccac            <  2:631438/150‑1 (MQ=255)                                                                                                                                             ccATGGCTCGATCGCCAGCTGGAAGTGGCTGAAGGTATGGGTCAGGCCGTCCATGGCGTGGCGGCCAGCCAGGCGCAGGCCGTGCTGGTAGGCCAGGTCGTCGAGCTGGGCGATGTCGTCCAGCTCCGGGAGGCTCCACAAACCACCCca        >  1:763196/1‑150 (MQ=255)                                                                                                                                                  gcTCGATCGCCAGCTGGAAGTGGCTGAAGGTATGGGTCAGGCCGTCCATGGCGTGGCGGCCAGCCAGGCGCAGGCCGTGCTGGTAGGCCAGGTCGTCGAGCTGGGCGATGTCGTCCAGCTCCGGGAGGCTCCACAAACCACCCCACAGGc   >  1:652864‑M2/3‑150 (MQ=255)                                                                                                                                                   cTCGATCGCCAGCTGGAAGTGGCTGAAGGTATGGGTCAGGCCGTCCATGGCGTGGCGGCCAGCCAGGCGCAGGCCGTGCTGGTAGGCCAGGTCGTCGAGCTGGGCGATGTCGTCCAGCTCCGGGAGGCTCCACAAACCACCCCACAGGcc  >  1:494692‑M2/2‑150 (MQ=255)                                                                                                                                                    |                                                                                                                                                     CTGCGATCAGTTCGTCGGCCGCGCGTTCAAGCAGCTTTTTCACCGGGGCGGCGAGGCCCAGGCGCGGCGGGGTGGCGAG‑GTTATACCAGAGCCAGTCGGCCTCGGCCACGTGCTCGCCGACCGGGTCGACGTGCACGAGCCATGGCTCGATCGCCAGCTGGAAGTGGCTGAAGGTATGGGTCAGGCCGTCCATGGCGTGGCGGCCAGCCAGGCGCAGGCCGTGCTGGTAGGCCAGGTCGTCGAGCTGGGCGATGTCGTCCAGCTCCGGGAGGCTCCACAAACCACCCCACAGGCC  >  NC_002947/344552‑344846

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.