| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 401305 = | 18 (0.400) | 7 (0.160) | 5/240 | NT | 17.9% | coding (888/1059 nt) | PP_0334 | transposase |
| ? | NC_002947 | 3969005 = | 47 (1.080) | coding (1089/1179 nt) | PP_3498 | transposase | |||||
GCCTGATGATCCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTG‑GGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAATGCCACCGGGGCGCTAGGCGCTCCAACCCCTGCTAGTGAA > NC_002947/3968872‑3969147 | gCCTGATGATCCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTG‑GGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTatat < 1:962814/150‑1 (MQ=31) ccTGATGATCCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTG‑GGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTatatt > 1:497926/1‑149 (MQ=14) cTGATGATCCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTG‑GGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATATgg < 1:221090/150‑1 (MQ=32) cTGATGATCCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCATGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTG‑GGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATATgg > 2:875813/1‑150 (MQ=17) gatCCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTG‑GGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCCt < 2:186626/150‑1 (MQ=32) aGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTG‑GGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTatat < 2:1020652/138‑1 (MQ=31) aGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTG‑GGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTatat > 1:1020652/1‑138 (MQ=31) aGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTG‑GGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCCTGTTAc < 1:739563/150‑1 (MQ=32) ttCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTG‑GGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATATGGGccc < 1:582176/134‑1 (MQ=33) ttCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTG‑GGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATATGGGccc > 2:582176/1‑134 (MQ=32) tGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGCTGACCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGCGGCG‑TAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTAcc < 1:870313/150‑1 (MQ=11) cTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCGTG‑GGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCaaa < 1:530033/150‑1 (MQ=17) aGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTG‑GGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACcg > 2:581109/1‑150 (MQ=32) ggCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTG‑GGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCCTGTTa < 2:819647/119‑1 (MQ=33) ggCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTG‑GGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCCTGTTa > 1:819647/1‑119 (MQ=33) gCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTG‑GGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACcgaa > 1:628616/1‑150 (MQ=32) cTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTG‑GGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACcgaacg > 2:1134544/1‑150 (MQ=32) gATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTG‑GGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACcgaac < 1:834975/141‑1 (MQ=32) gATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTGG‑GGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACcgaac > 2:834975/1‑141 (MQ=17) gattagccagcctgatcgccgcctccttgcgcccaaggcgggatagccagcgcaagaggcggcgatcatctggctgatcgAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCg > 2:1080035‑M2/81‑150 (MQ=255) gCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTG‑GGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAggc > 2:141230/1‑150 (MQ=32) ccAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTG‑GGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGaaaaa > 2:187258/1‑141 (MQ=32) ccAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTG‑GGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGaaaaa < 1:187258/141‑1 (MQ=32) cAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTG‑GGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAggcgg > 1:1098012/1‑150 (MQ=32) cAGATGATCGCCGCCTCTTACGCTCGCTATCCCGCCTAG‑GGCGCAAGGAGCCGTAGATCAGGCTGGCTAATCGAAATCTGCGGAGTATATGTTCCCTGTTACCGAGCGATCAAGTTTACCAACGCAAGCCGAACTAAAAACCGGAggcgg > 2:570353/1‑150 (MQ=11) ccgccTCTTGCGCTGGCTATCCCGCCTTG‑GGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGt > 1:955267/1‑105 (MQ=32) ccgccTCTTGCGCTGGCTATCCCGCCTTG‑GGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGt < 2:955267/105‑1 (MQ=33) ccgccTCTTGCGCTGGCTATCCCGCCTTG‑GGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCct > 2:542946/1‑150 (MQ=32) ccgccTCTTGCGCTGGCTATCCCGCCTTG‑GGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCct > 2:982866/1‑150 (MQ=32) gccgcctccttgcgcccaaggcgggatagccagcgcaagaggcggcgatcatctggctgatcgAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCct > 2:999180‑M2/64‑150 (MQ=255) cgccTCTTGCGCTGGCTATCCCGCCTTG‑GGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCctc > 2:135074/1‑150 (MQ=32) cgcctccttgcgcccaaggcgggatagccagcgcaagaggcggcgatcatctggctgatcgAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCctct > 1:1134782‑M2/62‑150 (MQ=255) ctctTGCGCTGGCTATCCCGCCTTG‑GGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGa < 1:431351/150‑1 (MQ=32) cctccttgcgcccaaggcgggatagccagcgcaagaggcggcgatcatctggctgatcgAAATCTGCGGATTATCTGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGa > 1:301375‑M2/60‑150 (MQ=255) ctccttgcgcccaaggcgggatagccagcgcaagcggcggcgatcatctggctgatcgGAATCAG‑GCCTTCGCTGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGAcc > 2:271748‑M2/59‑150 (MQ=255) tccttgcgcccaaggcgggatagccagcgcaagaggcggcgatcatctggctgatcgGAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGAcc > 1:355642‑M2/58‑150 (MQ=255) cTGGCTATCCCGCCTTG‑GGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGa < 1:587779/142‑1 (MQ=32) cTGGCTATCCCGCCTTG‑GGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGa > 2:587779/1‑142 (MQ=32) cTGGCTATCCCGCCTTG‑GGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCgg < 1:381386/150‑1 (MQ=32) cTATCCCGCCTTG‑CGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCCGATCTGAACGATAAAATCACAGACCTATCATGTTTACCAACGCCAACCGAACGAAAAACCGGAGGCGACTATGAGCCTCTGACCAACCGGGTaa < 1:875813/150‑1 (MQ=2) tATCCCGCCTTG‑GGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAAt < 1:982866/150‑1 (MQ=32) aTCCCGCCTTG‑GGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAATg > 2:666566/1‑150 (MQ=32) cTTG‑GGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATAACGGTTACCAACGCAAACCGAACGAACAACCCGAGGCAAGCATGAGCGGCTGAGCAACCGGGTAATGCCACCgg > 1:569306/1‑150 (MQ=11) ttG‑GGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACcgaac < 2:356235/98‑1 (MQ=34) ttG‑GGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACcgaac > 1:356235/1‑98 (MQ=34) ttG‑GGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAATGCCACCggg < 1:542946/150‑1 (MQ=32) tagccagcgcaagaggcggcgatcatctggctgatcgAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAATGCCACCggg < 1:999180‑M2/113‑1 (MQ=255) tG‑GGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAATGCCACCgggg < 2:628616/150‑1 (MQ=32) ggcggcGATCAGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAATGCCACCGGGGCGCTAGGCGCTc < 1:581109/150‑1 (MQ=32) ggcgATCAGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAggcggc < 1:500361/99‑1 (MQ=34) ggcgATCAGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAggcggc > 2:500361/1‑99 (MQ=34) gATCAGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAggcg < 2:805205/94‑1 (MQ=33) gATCAGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAggcg > 1:805205/1‑94 (MQ=34) gctggctAATCGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAATGCCACCGGGGCGCTAGGCGCTCCAACCCCTGCTa > 1:989440/1‑150 (MQ=32) ctAATCGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAATGCCACCGGGGCGCTAGGCGCTCCAACCCCTGCTAGTGaa < 2:1098012/150‑1 (MQ=32) | GCCTGATGATCCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTG‑GGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAATGCCACCGGGGCGCTAGGCGCTCCAACCCCTGCTAGTGAA > NC_002947/3968872‑3969147 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |