New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	445062 =	47 (1.040)	6 (0.170)	5/194	NT	15.6%	intergenic (+32/‑256)	PP_0367/PP_0368	hypothetical protein/acyl‑CoA dehydrogenase
	?	NC_002947	445155 =	28 (0.790)					intergenic (+125/‑163)	PP_0367/PP_0368	hypothetical protein/acyl‑CoA dehydrogenase

TCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAA‑GGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCAAACAACTGTTTGATCGGCTTCCGCCAAGCGCGGGTCACCCCACAGAACTCAC  >  NC_002947/445011‑445301                                                                                                                                                   |                                                                                                                                                   gtgccatttacgccacgaaaaatggcaaatcagtcatgccatgccacaaacCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAA‑GGGTTtgt                                                                                                                                               >  1:531148‑M1/52‑150 (MQ=255)      gACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAA‑GGGTTTGtggcat                                                                                                                                          <  1:277788/150‑1 (MQ=255)           cTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAA‑GGGTTTGTggcatggcat                                                                                                                                     <  2:990190/150‑1 (MQ=255)               gCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAA‑GGGTTTGTGGCATGGCATGACt                                                                                                                                 >  2:91587/1‑150 (MQ=255)                  tGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGGTTTCCCGCGAATGCGTCCCATCCGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAA‑GGGTTTGTGGCATGGCACGACTGAt                                                                                                                              >  2:1043651/1‑150 (MQ=255)                  tGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAA‑GGGTTTGTGGCATGGCATGACTGAt                                                                                                                              <  1:46557/150‑1 (MQ=255)                   gAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAA‑GGGTTTGTGGCATGGCATGACTGAtt                                                                                                                             >  1:642268/1‑150 (MQ=255)                    aaTACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAA‑GGGTTTGTGGCATGGCATGACTGAttt                                                                                                                            <  2:642268/150‑1 (MQ=255)                                acccccTTTTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATCCGTCCGATCAGACAACAATT‑TTGTCGGGTCGGGCCTCTTCGCGGGCCAGCCCGCTCCTACAA‑GGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGt                                                                                                                <  2:876032/148‑1 (MQ=255)                                aTCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGCGCAAGCCCGCTCCTACAA‑GGGTTTGTGGCATGGCATGACTCATTTGCCATGTCTCGt                                                                                                                <  2:777030/150‑1 (MQ=255)                                 tCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAA‑GGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTg                                                                                                               >  2:1023926/1‑150 (MQ=255)                                 tCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCCTACCCCCGAATCAGCACCCTCCGACAACCATT‑TTCTCAGTTCGGTCGGGTTCGCGGTCAGGTCCTCTCCTACGA‑GGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTg                                                                                                               >  2:1041864/1‑150 (MQ=255)                                             gcgcCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAAAT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCCCCCACAACTCGTATG‑GGCCTGGCCTGACTGATTTGCCATTTTTCGTGGCGTAAATTGCa                                                                                                   >  1:676788/1‑150 (MQ=37)                                                acaaacccttgtaggagcgggcttgcccgcgaagaggcccgaccagacaaaattgttgtctgatcggacgcattcgcgggcaagcccgctcctacaaggGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCAc                                                                                                  >  1:531148‑M2/100‑150 (MQ=255)                                                      TTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAA‑GGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTcc                                                                                          <  1:505777‑M1/150‑1 (MQ=255)                                                              GCGGACTTGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAA‑GGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGa                                                                                  >  2:831269‑M1/1‑150 (MQ=255)                                                                  GCTTGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAA‑GGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTg                                                                                   >  2:251634‑M1/1‑145 (MQ=255)                                                                  GCTTGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAA‑GGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTg                                                                                   <  1:251634‑M1/145‑1 (MQ=255)                                                                    gcttgcccgcgaagaggcccgaccagacaaaattgttgtctgatcggacgcattcgcgggcaagcccgctcctacaaggGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGa                                                                              >  2:216227‑M2/80‑150 (MQ=255)                                                                        CCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAA‑GGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTg                                                                        <  1:962294‑M1/150‑1 (MQ=255)                                                                          ccgcgaagaggcccgaccagacaaaattgttgtctgatcggacgcattcgcgggcaagcccgctcctacaaggGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGa                                                                                  >  2:884637‑M2/74‑140 (MQ=255)                                                                          ccgcgaagaggcccgaccagacaaaattgttgtctgatcggacgcattcgcgggcaagcccgctcctacaaggGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGa                                                                                  <  1:884637‑M2/67‑1 (MQ=255)                                                                          ccgcgaagaggcccgaccagacaaaattgttgtctgatcggacgcattcgcgggcaagcccgctcctacaaggGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTg                                                                        >  1:1003439‑M2/74‑150 (MQ=255)                                                                                gCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAA‑GGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAAc                                                                <  1:91587/150‑1 (MQ=255)                                                                                      ccgaccagacaaaattgttgtctgatcggacgcattcgcgggcaagcccgctcctacaaggGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTaa                                                            >  1:1160433‑M2/62‑150 (MQ=255)                                                                                        tCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAA‑GGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGttt                                                        <  1:1188365/150‑1 (MQ=255)                                                                                         cAGACAA‑AATTGTTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAA‑GGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTgg                                                                                                              <  1:604052/95‑1 (MQ=37)                                                                                         cAGACAA‑AATTGTTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAA‑GGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTgg                                                                                                              >  2:604052/1‑95 (MQ=37)                                                                                          aGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTAAAA‑GGGTTTGTGGCATAGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCa                                                      <  1:1050373/150‑1 (MQ=255)                                                                                            acaacaATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAA‑GGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCtt                                                                                    >  1:713656/1‑118 (MQ=255)                                                                                            acaacaATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAA‑GGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCtt                                                                                    <  2:713656/118‑1 (MQ=255)                                                                                            acaacaATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAA‑GGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCaaa                                                    >  1:414262/1‑150 (MQ=255)                                                                                              aacaaTT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAA‑GGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCAaaca                                                  >  2:69434/1‑150 (MQ=255)                                                                                              aacaaTT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAA‑GGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCAaaca                                                  >  2:461780/1‑150 (MQ=255)                                                                                                caaTT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAA‑GGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAg                                                                      >  1:964340/1‑128 (MQ=255)                                                                                                caaTT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAA‑GGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAg                                                                      <  2:964340/128‑1 (MQ=255)                                                                                                 aaTT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAA‑GGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCAAACAACt                                               <  2:414262/150‑1 (MQ=255)                                                                                                             gTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAA‑GGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGTTGAGCTAAACGTAAGTTTCAAACAACTGTTTGaaa                                       >  2:1062956/1‑145 (MQ=255)                                                                                                             gTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAA‑GGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGTTGAGCTAAACGTAAGTTTCAAACAACTGTTTGaaa                                       <  1:1062956/147‑3 (MQ=255)                                                                                                             gTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAA‑GGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCAAACAACTGTTTGATCGGc                                    <  1:461780/150‑1 (MQ=255)                                                                                                                        ttcgcgggcaagcccgctcctacaaggGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTACACAGCCCGCGGACCTAAACGTAAGTTTCAAACAACTGTTTGATCGGCTTCCGCCAAg                          >  2:337155‑M2/28‑150 (MQ=255)                                                                                                                         tcgcgggcaagcccgctcctacaaggGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCAAACAACTGTTTGATCGGCTTCCGCCAAgc                         >  2:768389‑M2/27‑150 (MQ=255)                                                                                                                             gggcaagcccgctcctacaaggGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCATCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCAAACAACTGTTTGATCGGCTTCCGCCAAGCGCgg                     <  1:1023926‑M2/128‑1 (MQ=255)                                                                                                                             gggcaagcccgctcctacaaggGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCAAACAACTGTTTGATCGGCTTCCGCCAAGCGCgg                     <  2:531148‑M2/128‑1 (MQ=255)                                                                                                                                 aagcccgctcctacaaggGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCAAACAACTGTTTGATCGGCTTCCGCCAAGCGCGGGTCa                 >  1:313795‑M2/19‑150 (MQ=255)                                                                                                                                               aaggGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCAAACAACTGTTTGATCGGCTTCCGCCAAGCGCGGGTCACCCCACAGAACTCa   >  1:313460‑M2/5‑150 (MQ=255)                                                                                                                                               aaggGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCAAACAACTGTTTGATCGGCTTCCGCCAAGCGCGGGTCACCCCACAGAACTCa   >  1:292696‑M2/5‑150 (MQ=255)                                                                                                                                                aggGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCAAACAACTGTTTGATCGGCTTCCGCCAAGCGCGGGTCACCCCACAGAACTCAc  <  2:962294‑M2/147‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                   TCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAA‑GGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCAAACAACTGTTTGATCGGCTTCCGCCAAGCGCGGGTCACCCCACAGAACTCAC  >  NC_002947/445011‑445301

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.