New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1037761 =	57 (1.260)	4 (0.090)	4/240	NT	7.4%	intergenic (+3/+113)	PP_0896/PP_0897	carbon‑nitrogen hydrolase family protein/class 1 fumarate hydratase
	?	NC_002947	1037865 =	45 (1.030)					intergenic (+107/+9)	PP_0896/PP_0897	carbon‑nitrogen hydrolase family protein/class 1 fumarate hydratase

GGGACTGGCCGGAGCAGTTCGAGAGAGTCCTGTGATGACTGTGGCGGCCTCTTCGCGGGCAAGCCCGCTCCCAAATGCGTAGCCTTCTGGCTTGCGCTGTACGTGTGGGAGCGGGCTTGCCCGCGAAGCAG‑CCGCCGCAGTTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCGGCAATCTTGCTCTGCCACAGGGCAGGGCCAGTGATGTGTACCGATTCACCGTTGCTGTCCACGGCGACGGTCACCGGCATGTCCTTGACTTCGAACTCGTAGATCGCTT  >  NC_002947/1037724‑1038010                                                                                                                                               |                                                                                                                                                  gggACTGGCCGGAGCAGTTCGAGAGAGTCCTGTGATGACTGTGGCGGCCTCTTCGCGGGCAAGCCCGCTCCCAAATGCGTAGCCTTCTGGCTTGCGCTGTACGTGTGGGAGCGGGCTTGCCCGCGAAGCAG‑CCGCCGCAGTTACATCAgg                                                                                                                                           <  2:432969/150‑1 (MQ=255)  ggACTGGCCGGAGCAGTTCGAGAGAGTCCTGTGATGACTGTGGCGGCCTCTTCGCGGGCAAGCCCGCTCCCAAATGCGTAGCCTTCTGGCTTGCGCTGTACGTGTGGGAGCGGGCTTGCCCGCGAAGCAG‑CCGCCGCAGTTACATCAGGt                                                                                                                                          <  2:838373/150‑1 (MQ=255)                aGTTCGAGAGAGTCCTGTGATGACTGTGGCGGCCTCTTCGCGGGCAAGCCCGCTCCCAAATGCGTAGCCTTCTGGCTTGCGCTGTACGTGTGGGAGCGGGCTTGCCCG‑GGGCCAGTGCGCCGCAGTTACATCAGGTTACTTCACTTCGAc                                                                                                                            >  1:62483/1‑150 (MQ=255)                  ttCGAGAGAGTCCTGTGATGACTGTGGCGGCCTCTTCGCGGGCAAGCCCGCTCCCAAATGCGTAGCCTTCTGGCTTTCGCTGTACGTGTGGGAGCGGGCTTGCCCGCGAAGCAG‑CCGCCGCAGTTACATCAGGTTACTTCACTTCGACgg                                                                                                                          >  2:784673/1‑150 (MQ=255)                  ttCGAGAGAGTCCTGTGATGACTGTGGCGGCCTCTTCGCGGGCAAGCCCGCTCCCAAATGCGTAGCCTTCTGGCTTGCGCTGTACGTGTGGGAGCGGGCTTGCCCGCGAAGCAG‑CCGCCGCAGTTACATCAGGTTACTTCACTTCGACgg                                                                                                                          >  1:878033/1‑150 (MQ=255)                       gagagTCCTGTGATGACTGTGGCGGCCTCTTCGCGGGCAAGCCCGCTCCCAAATGCGTAGCCTTCTGGCTTGCGCTGTACGTGTGGGAGCGGGCTTGCCCGCGAAGCAG‑CCGCCGCAGTTACATCAGGTTACTTCACTTCGACGGCCAgg                                                                                                                     <  2:219011/150‑1 (MQ=255)                             ccTGTGATGACTGTGGCGGCCTCTTCGCGGGCAAGCCCGCTCCCAAATGCGTAGCCTTCTGGCTTGCGCTGTACGTGTGGGAGCGGGCTTGCCCGCGAAGCAG‑CCGCCGCAGTTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCg                                                                                                               <  2:941283/150‑1 (MQ=255)                              cTGTGATGACTGTGGCGGCCTCTTCGCGGGCAAGCCCGCTCCCAAATGCGTAGCCTTCTGGCTTGCGCTGTACGTGTGGGAGCGGGCTTGCCCGCGAAGCAG‑CCGCCGCAGTTACATCAgg                                                                                                                                           >  1:1105705/1‑121 (MQ=255)                              cTGTGATGACTGTGGCGGCCTCTTCGCGGGCAAGCCCGCTCCCAAATGCGTAGCCTTCTGGCTTGCGCTGTACGTGTGGGAGCGGGCTTGCCCGCGAAGCAG‑CCGCCGCAGTTACATCAgg                                                                                                                                           <  2:1105705/121‑1 (MQ=255)                                   atgaCTGTGGCGGCCTCTTCGCGGGCAAGCCCGCTCCCAAATGCGTAGCCTTCTGGCTTGCGCTGTACGTGTGGGAGCGGGCTTGCCCGCGAAGCAG‑CCGCCGCAGTTACATCa                                                                                                                                             <  2:906744/114‑1 (MQ=255)                                   atgaCTGTGGCGGCCTCTTCGCGGGCAAGCCCGCTCCCAAATGCGTAGCCTTCTGGCTTGCGCTGTACGTGTGGGAGCGGGCTTGCCCGCGAAGCAG‑CCGCCGCAGTTACATCa                                                                                                                                             >  1:906744/1‑114 (MQ=255)                                        TGTGGCGGCCTCTTCGCGGGCAAGCCCGCTCCCAAATGCGTAGCCTTCTGGCTTGCGCTGTACGTGTGGGAGCGGGCTTGCCCGCGAAGCAG‑CCGCCGCAGTTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCGGCAATCTTGct                                                                                                    >  2:878033‑M1/1‑150 (MQ=255)                                              ggcCTCTTCGCGGGCAAGCCCGCTCCCAAATGCGTAGCCTTCTGGCTTGCGCTGTACGTGTGGGAGCGGGCTTGCCCGCGAAGCAG‑CCGCCGCAGTTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCGGCAATCTTGCTCTGCca                                                                                              >  1:529560/1‑150 (MQ=255)                                                 ctctTCGCGGGCAAGCCCGCTCCCAAATGCGTAGCCTTCTGGCTTGCGCTGTACGTGTGGGAGCGGGCTTGCCCGCGAAGCAG‑CCGCCGCAGTTACATCAGGTTacttcactt                                                                                                                                <  1:1013685/113‑1 (MQ=255)                                                 ctctTCGCGGGCAAGCCCGCTCCCAAATGCGTAGCCTTCTGGCTTGCGCTGTACGTGTGGGAGCGGGCTTGCCCGCGAAGCAG‑CCGCCGCAGTTACATCAGGTTacttcactt                                                                                                                                >  2:1013685/1‑113 (MQ=255)                                                  tctTCGCGGGCAAGCCCGCTCCCAAATGCGTAGCCTTCTGGCTTGCGCTGTACGTGTGGGAGCGGGCTTGCCCGCGAAGCAG‑CCGCCGCAGTTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCGGCaa                                                                                                           >  1:722752/1‑133 (MQ=255)                                                  tctTCGCGGGCAAGCCCGCTCCCAAATGCGTAGCCTTCTGGCTTGCGCTGTACGTGTGGGAGCGGGCTTGCCCGCGAAGCAG‑CCGCCGCAGTTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCGGCaa                                                                                                           <  2:722752/133‑1 (MQ=255)                                                  tctTCGCGGGCAAGCCCGCTCCCAAATGCGTAGCCTTCTGGCTTGCGCTGTACGTGTGGGAGCGGGCTTGCCCGCGAAGCAG‑CCGCCGCAGTTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCGGCAATCTTGCTCTGCCAcagg                                                                                          <  1:541647/150‑1 (MQ=255)                                                   ctTCGCGGGCAAGCCCGCTCCCAAATGCGTAGCCTTCTGGCTTGCGCTGTACGTGTGGGAGCGGGCTTGCCCGCGAAGCAG‑CCGCCGCAGTTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCGGCAATCTTGCTCTGCCAcaggg                                                                                         >  2:779114/1‑150 (MQ=255)                                                       gcgGGCAAGCCCGCTCCCAAATGCGTAGCCTTCTGGCTTGCGCTGTACGTGTGGGAGCGGGCTTGCCCGCGAAGCAG‑CCGCCGCAGTTACATCACTTCACTTCATTTCGACGGCCAGGCTTTCGGCAATCTTGCTCTGCCAcagggcagg                                                                                     <  2:1199586/150‑1 (MQ=255)                                                         gggCAAGCCCGCTCCCAAATGCGTAGCCTTCTGGCTTGCGCTGTACGTGTGGGAGCGGGCTTGCCCGCGAAGCAG‑CCGCCGCAGTTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCGGCAATCTTGCTCTGCCACagggcagggc                                                                                   <  1:779114/150‑1 (MQ=255)                                                             aaGCCCGCTCCCAAATGCGTAGCCTTCTGGCTTGCGCTGTACGTGTGGGAGCGGGCTTGCCCGCGAAGCAG‑CCGCCGCAGTTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCGGCAATc                                                                                                         >  2:569040/1‑124 (MQ=255)                                                             aaGCCCGCTCCCAAATGCGTAGCCTTCTGGCTTGCGCTGTACGTGTGGGAGCGGGCTTGCCCGCGAAGCAG‑CCGCCGCAGTTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCGGCAATc                                                                                                         <  1:569040/124‑1 (MQ=255)                                                             aaGCCCGCTCCCAAATGCGTAGCCTTCTGGCTTGCGCTGTACGTGTGGGAGCGGGCTTGCCCGCGAAGCAG‑CCGCCGCAGTTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCGGCAATCTTGCTCTGCCACAGGGCAGGGCCAGt                                                                               <  2:989196/150‑1 (MQ=255)                                                               gCCCGCTCCCAAATGCGTAGCCTTCTGGCTTGCGCTGTACGTGTGGGAGCGGGCTTGCCCGCGAAGCAG‑CCGCCGCAGTTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCGGCAATCTTGCTCTGCca                                                                                              >  2:1028732/1‑133 (MQ=255)                                                               gCCCGCTCCCAAATGCGTAGCCTTCTGGCTTGCGCTGTACGTGTGGGAGCGGGCTTGCCCGCGAAGCAG‑CCGCCGCAGTTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCGGCAATCTTGCTCTGCca                                                                                              <  1:1028732/133‑1 (MQ=255)                                                               gCCCGCTCCCAAATGCGTAGCCTTCTGGCTTGCGCTGTACGTGTGGGAGCGGGCTTGCCCGCGAAGCAG‑CCGCCGCAGTTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCGGCAATCTTGCTCTGCCACAGGGCAGGGCCAGTGa                                                                             <  2:529560/150‑1 (MQ=255)                                                                gcccgctcccacacgtacagcgcaagccagaaggctacgcatttgggagcgggcttgcccgcgaagaggccgccacagtTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCGGCAATCTTGCTCTGCCACAGGGCAGGGCCAGTGa                                                                             >  1:551741‑M2/80‑150 (MQ=255)                                                                cccGCTCCCAAATGCGTAGCCTTCTGGCTTGCGCTGTACGTGTGGGAGCGGGCTTGCCCGCGAAGCAG‑CCGCCGCAGTTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCGGCAATCTTGCTCTGCCACAGGGCAGGGCCAGTGAt                                                                            <  2:1105523/150‑1 (MQ=255)                                                                 ccGCTCCCAAATGCGTAGCCTTCTGGCTTGCGCTGTACGTGTGGGAGCGGGCTTGCCCGCGAAGCAG‑CCGCCGCAGTTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCGGCAATCTTGCTCTGCCAcagg                                                                                          >  1:9289/1‑135 (MQ=255)                                                                 ccGCTCCCAAATGCGTAGCCTTCTGGCTTGCGCTGTACGTGTGGGAGCGGGCTTGCCCGCGAAGCAG‑CCGCCGCAGTTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCGGCAATCTTGCTCTGCCAcagg                                                                                          <  2:9289/135‑1 (MQ=255)                                                                 ccGCTCCCAAATGCGTAGCCTTCTGGCTTGCGCTGTACGTGTGGGAGCGGGCTTGCCCGCGAAGCAG‑CCGCCGCAGTTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCGGCAATCTTGCTCTGCCACAGGGCAGGGCCAGTGAtg                                                                           >  2:281631/1‑150 (MQ=255)                                                                 ccGCTCCCAAATGCGTAGCCTTCTGGCTTGCGCTGTACGTGTGGGAGCGGGCTTGCCCGCGAAGCAG‑CCGCCGCAGTTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCGGCAATCTTGCTCTGCCACAGGGCAGGGCCAGTGAtg                                                                           >  1:701418/1‑150 (MQ=255)                                                                  cGCTCCCAAATGCGTAGTCTACTGGCATGCGCTGTGCGTGTGGGAGCGGGCTTGCCCGCGAAGCAG‑CCGCCGCAGTTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCGGCAATCTTGCTCTGCCACAGGGCAGGGCCAGTGAtgt                                                                          <  2:62483/150‑1 (MQ=255)                                                                      tcccacacgtacagcgcaagccagaaggctacgcatttgggagcgggcttgcccgcgaagaggccgccacagtTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCGGCAATCTTGCTCTGCCACagggcagggc                                                                                   <  2:5275‑M2/65‑1 (MQ=255)                                                                      tcccacacgtacagcgcaagccagaaggctacgcatttgggagcgggcttgcccgcgaagaggccgccacagtTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCGGCAATCTTGCTCTGCCACagggcagggc                                                                                   >  1:5275‑M2/74‑138 (MQ=255)                                                                       ccAAATGCGTAGCCTTCTGGCTTGCGCTGTACGTGTGGGAGCGGGCTTGCCCGCGAAGCAG‑CCGCCGCAGTTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCGGCAATCTTGCTCTGCCACAGGGCAGGGCCAGTGATGTGTAcc                                                                     >  1:7633/1‑150 (MQ=255)                                                                          aaTGCGTAGCCTTCTGGCTTGCGCTGTACGTGTGGGAGCGGGCTTGCCCGCGAAGCAG‑CCGCCGCAGTTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCGGCAATCTTGCTCTGCCACAGGGCAGGGCCAGTGATGTGTACCGAt                                                                  <  1:784673/150‑1 (MQ=255)                                                                           aTGCGTAGCCTTCTGGCTTGCGCTGTACGTGTGGGAGCGGGCTTGCCCGCGAAGCAG‑CCGCCGCAGTTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCGGCAATCTTGCTCTGCCACAGGGCAGGGCCAGTGATGTGTACCGAtt                                                                 <  1:281631/150‑1 (MQ=255)                                                                                                            ttcgCGGGCTTGCCCGCGAAGCAG‑CCGCCGCAGTTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCGGCAATCTTGCTCTGCCACAGGGCAGGGCCAGTGATGTGTACCGATTCACCGTTGCTGTCCACGGCGACGGTCACCGGCa                                >  2:943406/4‑150 (MQ=255)                                                                                                            ggAGCGGGCTTGCCCGCGAAGCAG‑CCGCCGCAGTTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCGGCAATCTTGCTCTGCCACAGGGCAGGGCCAGTGATGTGTACCGATTCACCGTTGCTGTCCACGGCGACGGTCACCGGCa                                >  1:1190865/1‑150 (MQ=255)                                                                                                                     ttGCCCGCGAAGCAG‑CCGCCGCAGTTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCGGCAATCTTGCTCTGCCACAGGGCAGGGCCAGTGATGTGTACCGATTCACCGTTGCTGTCCACGGCGACGGTCACCGGCATGTCCTTGa                       <  2:7633/150‑1 (MQ=255)                                                                                                                         ccGCGAAGCAG‑CCGCCGCAGTTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCGGCAATCTTGCTCTGCCACAGGGCAGGGCCAGTGAt                                                                            >  2:339531/1‑93 (MQ=255)                                                                                                                         ccGCGAAGCAG‑CCGCCGCAGTTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCGGCAATCTTGCTCTGCCACAGGGCAGGGCCAGTGAt                                                                            <  1:339531/93‑1 (MQ=255)                                                                                                                          cgcgAAGCAG‑CCGCCGCAGTTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCGGCAATCTTGCTCTGCCACAGGGCAGGGCCAGTGATGTGTACCGATTCACCGTTGCTGTCCACGGCGACGGTCACCGGCATGTCCTTGACTTCg                  >  2:228122/1‑150 (MQ=255)                                                                                                                           gcgAAGCAG‑CCGCCGCAGTTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCGGCAATCTTGCTCTGCCACAGGGCAGGGCCAGTGATGTGTACCGATTCACCGTTGCTGTCCACGGCGACGGTCACCGGCATGTCCTTGACTTCGa                 >  1:112784/1‑150 (MQ=255)                                                                                                                           gcgAAGCAG‑CCGCCGCAGTTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCGGCAATCTTGCTCTGCCACAGGGCAGGGCCAGTGATGTGTACCGATTCACCGTTGCTGTCCACGGCGACGGTCACCGGCATGTCCTTGACTTCGa                 >  2:950504/1‑150 (MQ=255)                                                                                                                               agcag‑cCGCCGCAGTTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCGGCAATCTTGCCCTGCCTGGTGGCAGGGCCAGTGATGTGTACCGATTCACCGTTGCTGTCCACGGCGACGGTCACCGGCATGTCCTTGACTTCGAACTc             <  1:208625/150‑1 (MQ=255)                                                                                                                                agaggccgccacagtTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCGGCAATCTTGCTCTGCCACAGGGCAGGGCCAGTGATGTGTACCGATTCACCGTTGCTGTCCACGGCGACGGTCACCGGCATGTCCTTGACTTCGAACTc             <  2:551741‑M2/135‑1 (MQ=255)                                                                                                                                     ccgccgCAGTTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCGGCAATCTTGCTCTGCCACAGGGCAGGGCCAGTGATGTGTACCGATTCACCGTTGCTGTCCACGGCGACGGTCACCGGCATGTCCTTGACTTCGAACTCGTAGa        <  1:950504/150‑1 (MQ=255)                                                                                                                                          gcAGTTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCGGCAATCTTGCTCTGCCACAGGGCAGGGCCAGTGATGTGTACCGATTCACCGTTGCTGTCCACGGCGACGGTCACCGGCAGGGCCTTGACTTCGAACTCGTAGATCGCt   >  2:498485/1‑150 (MQ=255)                                                                                                                                           cagtTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCGGCAATCTTGCTCTGCATGAGTGCAGGGCCAGTGATGTGTACCGATTCACCGTTGCTGTCCACGGCGACGGTCACCGGCATGTCCTTGACTTCGAACTCGTAGATCGCtt  <  1:920006‑M2/146‑1 (MQ=255)                                                                                                                                              tTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCGGCAATCTTGCTCTGCCACAGGGCAGGGCCAGTGATGTGTACCGATTCACCGTTGCTGTCCACGGCGACGGTCACCGGCAt                               >  1:570554‑M2/2‑118 (MQ=255)                                                                                                                                              tTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCGGCAATCTTGCTCTGCCACAGGGCAGGGCCAGTGATGTGTACCGATTCACCGTTGCTGTCCACGGCGACGGTCACCGGCAt                               <  2:570554‑M2/117‑1 (MQ=255)                                                                                                                                               |                                                                                                                                                  GGGACTGGCCGGAGCAGTTCGAGAGAGTCCTGTGATGACTGTGGCGGCCTCTTCGCGGGCAAGCCCGCTCCCAAATGCGTAGCCTTCTGGCTTGCGCTGTACGTGTGGGAGCGGGCTTGCCCGCGAAGCAG‑CCGCCGCAGTTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCGGCAATCTTGCTCTGCCACAGGGCAGGGCCAGTGATGTGTACCGATTCACCGTTGCTGTCCACGGCGACGGTCACCGGCATGTCCTTGACTTCGAACTCGTAGATCGCTT  >  NC_002947/1037724‑1038010

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.