New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1114875 =	42 (0.930)	8 (0.220)	7/198	NT	22.7%	intergenic (‑64/+115)	rlmF/valS	ribosomal RNA large subunit methyltransferase F/valine‑‑tRNA ligase
	?	NC_002947	1114951 =	21 (0.580)					intergenic (‑140/+39)	rlmF/valS	ribosomal RNA large subunit methyltransferase F/valine‑‑tRNA ligase

GGGTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGCG‑CCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGTTGGCCAGGGCCTGTTCGGACTCGGCCAGCTTGGCGCGTTCCTTCTCGATCACCGCAGGCGGGGCCTTGT  >  NC_002947/1114805‑1115096                                                                                                                                                    |                                                                                                                                                  gggTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGCG‑CCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGaaa                                                                                                                                                <  1:826205/150‑1 (MQ=255)   gTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGCG‑CCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAgg                                                                                                                                              >  2:402071/1‑150 (MQ=255)   gTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGACGGCGCCAACCTTCAAGG‑CGCCACCCTCCTGTGGGAGCGGCCTTGTGTCGCAAAAgg                                                                                                                                              <  1:983814/150‑1 (MQ=14)     cATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGCG‑CCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGc                                                                                                                                            <  2:697387/150‑1 (MQ=255)          atgcgcggattgcagcgctgtaatcactagagagaccgttggggccgctgtacggccctttcgcgacacaaggccgctcccacaggacggcgccaaccttcaaggcgccaccctcctgtgggagcggacttgtgtcgcGAAcgggctgcg                                                                                                                                        >  1:248926‑M2/139‑146 (MQ=255)                gattgcagcgctgtaatcactagagagaccgttggggccgctgtacagcccttttGCGACACAAGGCCGCTCCCACAGGAGGGTGGCG‑CCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAGCGGc                                                                                                                                 >  1:438618‑M1/56‑150 (MQ=255)                ccAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGCG‑CCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAGCGGc                                                                                                                                 <  2:591744/150‑1 (MQ=255)                      cTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGCG‑CCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAGTGGCCCCAAc                                                                                                                           <  1:93534/150‑1 (MQ=255)                                ggcagCTTAAAGACTCTGGTGCTGCTGCACAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGGGGGTGGCG‑CCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTa                                                                                                                 <  2:974246/146‑1 (MQ=38)                                       tcaaGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGCG‑CCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTa                                                                                                          >  2:334177/3‑150 (MQ=255)                                              ccTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGCG‑CCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAGCGGccc                                                                                                                               <  2:153603/122‑1 (MQ=255)                                              ccTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGCG‑CCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAGCGGccc                                                                                                                               >  1:153603/1‑122 (MQ=255)                                                tGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGCG‑CCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAGCGGCCCCAACg                                                                                                                          >  1:257607/1‑125 (MQ=255)                                                tGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGCG‑CCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAGCGGCCCCAACg                                                                                                                          <  2:257607/125‑1 (MQ=255)                                                     gccgctgtacggccctttcgcgacacaaggccgctcccacaggacggcgccaaccttcaaggcgccaccctcctgtgggagcggccttgtgtcgcAAAAGGGCTGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATc                                                                                             >  1:438618‑M2/96‑150 (MQ=255)                                                           cgcagcccgttcGCGACACAAGTCCGCTCCCACAGGAGGGTGGCG‑CCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCAt                                                                                      >  1:248926‑M1/13‑150 (MQ=255)                                                                 ccTTTTGCGACACAAGGCCGCTCCCACANNAGGGTGGCG‑CCTTGNANGNTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTCCAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATgctgct                                                                                >  1:729409/1‑150 (MQ=255)                                                                  cTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGCG‑CCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTc                                                                               <  1:526962/150‑1 (MQ=255)                                                                   ttttGCGACACAAGGCCGCTCCCACAGGAGGGTGGCG‑CCTTGAAGGTGGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCg                                                                              >  2:236423/1‑150 (MQ=255)                                                                          ACACAAGGCCGCTCCCACAGGAGGGTGGCG‑CCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGt                                                                       >  1:402071‑M1/1‑150 (MQ=255)                                                                              AAGGCCGCTCCCACAGGAGGGTGGCG‑CCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGTTGGc                                                                   >  2:232191‑M1/1‑150 (MQ=255)                                                                                  gccgctcccacaggacggcgccaaccttcaaggcgccaccctcctgtgggagcggccttgtgtcgcGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCg                                                                              >  2:1067938‑M2/67‑136 (MQ=255)                                                                                  gccgctcccacaggacggcgccaaccttcaaggcgccaccctcctgtgggagcggccttgtgtcgcGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCg                                                                              <  1:1067938‑M2/70‑1 (MQ=255)                                                                                       tcccacaggacggcgccaaccttcaaggcgccaccctcctgtgggagcggccttgtgtcgcGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGTTGGCCAGGGCCt                                                           >  2:849669‑M2/62‑150 (MQ=255)                                                                                        cccacaggacggcgccaaccttcaaggcgccaccctcctgtgggagcggccttgtgtcgcGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGa                                                                                                             <  1:734169‑M2/39‑1 (MQ=255)                                                                                        cccacaggacggcgccaaccttcaaggcgccaccctcctgtgggagcggccttgtgtcgcGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGa                                                                                                             >  2:734169‑M2/61‑99 (MQ=255)                                                                                        CCACAGGAGGGTGGCG‑CCTTGAAGGTTGGCGCCGTCCTGTGGGGGCGGCCTTGTGTCGCGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGGTTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGTTGGCCAGGGCCTGt                                                         <  2:874311‑M1/150‑1 (MQ=255)                                                                                        CCACAGGAGGGTGGCG‑CCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGTTGGCCAGGGCCTGt                                                         <  2:1029176‑M1/150‑1 (MQ=255)                                                                                         CACAGGAGGGTGGCG‑CCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGTTGGCCAGGGCCTGtt                                                        <  1:562593‑M1/150‑1 (MQ=255)                                                                                          ACAGGAGGGTGGCG‑CCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGt                                                                                                               >  1:1189584‑M1/1‑94 (MQ=255)                                                                                          ACAGGAGGGTGGCG‑CCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGt                                                                                                               <  2:1189584‑M1/94‑1 (MQ=255)                                                                                          ACAGGAGGGTGGCG‑CCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGTTg                                                                     <  1:69207‑M1/136‑1 (MQ=255)                                                                                          ACAGGAGGGTGGCG‑CCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGTTg                                                                     >  2:69207‑M1/1‑136 (MQ=255)                                                                                          ACAGGAGGGTGGCG‑CCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGTTGGCCAGGGCCTGTTc                                                       <  2:613742‑M1/150‑1 (MQ=255)                                                                                           CAGGAGGGTGGCG‑CCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGTTGGCCAGGGCCTGTTCg                                                      <  1:200421‑M1/150‑1 (MQ=255)                                                                                           CAGGAGGGCGGCG‑TCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGTTGGCCAGGGCCTGTTCg                                                      <  2:744480‑M1/150‑1 (MQ=255)                                                                                            AGGAGGGTGGCG‑CCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGTTGGCCAGGGCCTGTTCgg                                                     <  1:1008860‑M1/150‑1 (MQ=255)                                                                                              GAGGGTGGCG‑CCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGTTGGCCAGGGCCTGTTCGGAc                                                   <  2:312554‑M1/150‑1 (MQ=255)                                                                                                 ggTGGCG‑CCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGTTGGCCAGGGCCTGTTCGGACTCg                                                <  1:1058272/150‑1 (MQ=255)                                                                                                  ggcgccaaccttcaaggcgccaccctcctgtgggagcggccttgtgtcgcAAAAGGGCTGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGTTGGCCAGGGCCTGTTCGGACTCg                                                <  2:438618‑M2/100‑1 (MQ=255)                                                                                                       g‑cCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCt                                                                                                   >  1:477817/1‑93 (MQ=255)                                                                                                       g‑cCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCt                                                                                                   <  2:477817/93‑1 (MQ=255)                                                                                                       g‑cCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGTTGGCCAGGGCCTGTTCGGACTCGGCCAGc                                          >  1:319618/1‑150 (MQ=255)                                                                                                          cTTGAAGGTTGGCGACGTGCTGTGTTAGCGGCGTTGTGTCGCGAAAGGTCCGTACAGTGGCCCCAACGGTCTCTCTAGTAATTACACCGCTGTAATCCGCGCATGATGATCGGTGCAGCTGGCCAGGGGCTGTTGGGATTCGGCCCGCtt                                        >  2:518933/1‑150 (MQ=255)                                                                                                             gAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGTTGGCCAGGGCCTGTTCGGACTCGGCCAGCTTGgc                                     <  1:744480/150‑1 (MQ=255)                                                                                                                   tGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGTTGGCCAGGGCCTGTTCGGACTCGGCCAGCTTGGCGCGTTc                               <  1:587930/150‑1 (MQ=255)                                                                                                                       gcCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGt                                                                                                               <  2:41116/66‑1 (MQ=255)                                                                                                                       gcCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGt                                                                                                               >  1:41116/1‑66 (MQ=255)                                                                                                                        ccctcctgtgggagcggccttgtgtcgcGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCgcgc                                                                                        >  2:395755‑M2/29‑88 (MQ=255)                                                                                                                        ccctcctgtgggagcggccttgtgtcgcGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCgcgc                                                                                        <  1:395755‑M2/60‑1 (MQ=255)                                                                                                                                tgggagcggccttgtgtcgcGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGTTGGCCAGGGCCTGTTCGGACTCGGCCAGCTTGGCGCGTTCCTTCTCGATCAcc                  <  1:849669‑M2/130‑1 (MQ=255)                                                                                                                                tgggagcggccttgtgtcgcGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGTTGGCCAGGGCCTGTTCGGACTCGGCCAGCTTGGCGCGTTCCTTCTCGATCAcc                  >  1:603615‑M2/21‑150 (MQ=255)                                                                                                                                    agcggccttgtgtcgcGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGTTGGCCAGGGCCTGTTCGGACTCGGCCAGCTTGGCGCGTTCCTTCTCGATCACCGCAg              >  1:1024935‑M2/17‑150 (MQ=255)                                                                                                                                           ttgtgtcgcGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGTTGGCCAGGGCCTGTTCGGACTCGGCCAGCTTGGCGCGTTCCTTCTCGATCACCGCAGGCGGGGc       <  2:603615‑M2/141‑1 (MQ=255)                                                                                                                                             gtgtcgcGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGTTGGCCAGGGCCTGTTCGGACTCGGCCAGCTTGGCGCGTTCCTTCTCGATCACCGCAGGCGGGGCCt     >  2:802841‑M2/8‑150 (MQ=255)                                                                                                                                                tcgcGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGTTGGCCAGGGCCTGTTCGGACTCGGCCAGCTTGGCGCGTTCCTTCTCGATCACCGCAGGCGGGGCCTTGt  <  2:200421‑M2/146‑1 (MQ=255)                                                                                                                                                  gcGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGTTGGCCAGGGCCTGTTc                                                       >  1:251522‑M2/3‑95 (MQ=255)                                                                                                                                                  gcGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGTTGGCCAGGGCCTGTTc                                                       <  2:251522‑M2/93‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                  GGGTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGCG‑CCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGTTGGCCAGGGCCTGTTCGGACTCGGCCAGCTTGGCGCGTTCCTTCTCGATCACCGCAGGCGGGGCCTTGT  >  NC_002947/1114805‑1115096

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.