| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2379610 = | 41 (0.910) | 5 (0.110) | 5/242 | NT | 11.0% | intergenic (+22/‑68) | cmpX/PP_2088 | protein CmpX/RNA polymerase sigma factor SigX |
| ? | NC_002947 | 2379652 = | 41 (0.930) | intergenic (+64/‑26) | cmpX/PP_2088 | protein CmpX/RNA polymerase sigma factor SigX | |||||
GCTGACCGATGATGGCGAACTGGTGTCACTGGCTAACCGCGAGCTGCTTGAACAGCGCGTCAATAGCCGCTAACCGCACAAAAGCTGTTAATGTATGCCGCCGCGAAATTCGACCCACGGGGTCGCGCGGCGACATTGACCTGACTGTCGGCCAGATCCGTTTTGAATAAAGT‑TCATTCGCCGCCCATGCGCTATGACCCCCGCGAGCTCACAGACGAAGAGTTGGTGGCGCGTTCGCATGAGGAGCTGTACCACGTTACCCGCGCCTATGAAGAGCTCAT > NC_002947/2379516‑2379796 | gccaccaactcttcgtctgtgagctcgcgggggtcatagcgcatgggcggcgaatgaactttattcaaaacggatctggccgacagtcaggtcaATGTCGCCGCGAAATTCGACCCACGGGGTCGCGCGGCGACATTGACCTGACTGTCg > 1:293834‑M1/95‑150 (MQ=255) ctgACCGATGATGGCGAACTGGTGTCACTGGCTAACCGCGAGCTGCTTGAACAGCACGTTAATAGCCGCTAACCGCACAAAAGCTGTTAATGTATGCCGCCGCGAAATTCGACCCACGGGGTCGCGCGGCGACATTGACCTGACTGTCgg > 2:709372/1‑150 (MQ=255) gACCGATGATGGCGAACTGGTGTCACTGGCTAACCGCGAGCTGCTTGAACAGCGCGTCAATAGCCGCTAACCGCACAAAAGCTGTTAATGTATGCCGCCGCGAAATTCGACCCACGGGGTCGCGCGGCGACATTGACCTGACTGTCGGcc < 2:981184/150‑1 (MQ=255) aCCGATGATGGCGAACTGGTGTCACTGGCTAACCGCGAGCTGCTTGAACAGCGAGTCAATAGCCGCTAACCGCACAAAAGCTGTTAATGTATGCCGACGTGAAGTTCGACCCACGGGGTCGCGCGGCGACATTGACCTGACTGTCGGCCa < 1:929894/150‑1 (MQ=255) ctcttcgtctgtgagctcgcgggggtcatagcgcatgggcggcgaatgaactttattcaaaacggatctggccgacagtcaggtcaATGCCGCCGCGAAATTCGACCCACGGGGTCGCGCGGCGACATTGa > 1:858670‑M1/87‑131 (MQ=255) ctcttcgtctgtgagctcgcgggggtcatagcgcatgggcggcgaatgaactttattcaaaacggatctggccgacagtcaggtcaATGCCGCCGCGAAATTCGACCCACGGGGTCGCGCGGCGACATTGa < 2:858670‑M1/45‑1 (MQ=255) gCGAACTGGTGTCACTGGCTAACCGCGAGCTGCTTGAACAGCGCGTCAATAGCCGCTAACCGCACAAAAGCTGTTAATGTATGCCGCCGCGAAATTCGACCCACGGGGTCGCGCGGCGACATTGACCTGACTGTCGGCCAGATCCGtttt < 1:300744/150‑1 (MQ=255) gtgtCACTGGCTAACCGCGAGCTGCTTGAACAGCGCGTCAATAGCCGCTAACCGCACAAAAGCTGTTAATGTATGCCGCCGCGAAATTCGACCCACGGGGTCGCGCGGCGACATTGAc > 1:133762/1‑118 (MQ=255) gtgtCACTGGCTAACCGCGAGCTGCTTGAACAGCGCGTCAATAGCCGCTAACCGCACAAAAGCTGTTAATGTATGCCGCCGCGAAATTCGACCCACGGGGTCGCGCGGCGACATTGAc < 2:133762/118‑1 (MQ=255) gctcgcgggggtcatagcgcatgggcggcgaatgaactttattcaaaacggatctggccgacagtcaggtcaATGCCGCCGCGAAATTCGACCCACGGGGTCGCGCGGCGACAtt < 2:780331‑M1/43‑1 (MQ=255) gctcgcgggggtcatagcgcatgggcggcgaatgaactttattcaaaacggatctggccgacagtcaggtcaATGCCGCCGCGAAATTCGACCCACGGGGTCGCGCGGCGACAtt > 1:780331‑M1/73‑115 (MQ=255) aCTGGCTAACCGCGAGCTGCTTGAACAGCGCGTCAATAGCCGCTAACCGCACAAAAGCTGTTAATGTATGCCGCCGCGAAATTCGACCCACGGGGTCGCGCGGCGACATTGACCTGACTGTCGGCCAGATCCGTTTTGAATAAAGT‑TCAt > 1:770777/1‑150 (MQ=255) cTGGCTAACCGCGAGCTGCTTGAACAGCGCGTCAATAGCCGCTAACCGCACAAAAGCTGTTAATGTATGCCGCCGCGAAATTCGACCCACGGGGTCGCGCGGCGACATTGACCTGACTGTCGGCCAGATCCGTTTTGAATAAAGT‑TCAtt > 1:302268/1‑150 (MQ=255) cTGGCTAACCGCGAGCTGCTTGAACAGCGCGTCAATAGCCGCTAACCGCACAAAAGCTGTTAATGTATGCCGCCGCGAAATTCGACCCACGGGGTCGCGCGGCGACATTGACCTGACTGTCGGCCAGATCCGTTTTGAATAAAGT‑TCAtt < 1:357436/150‑1 (MQ=255) tGGCTAACCGCGAGCTGCTTGAACAGCGCGTCAATAGCCGCTAACCGCACAAAAGCTGTTAATGTATGCCGCCGCGAAATTCGACCCACGGGGTCGCGCGGCGACATTTACCTGACTGTc < 1:475756/120‑1 (MQ=255) tGGCTAACCGCGAGCTGCTTGAACAGCGCGTCAATAGCCGCTAACCGCACAAAAGCTGTTAATGTATGCCGCCGCGAAATTCGACCCACGGGGTCGCGCGGCGACATTTACCTGACTGTc > 2:475756/1‑120 (MQ=255) gAGCTGCTTGAACAGCGCGTCAATAGCCGCTAACCGCACAAAAGCTGTTAATGTATGCCGCCGCGAAATTCGACCCACGGGGTCGCGCGGCGACATTGACCTGACTGTCGGCCAGATCCGTTTTGAATAAAGT‑TCATTCGCCGCCCATgc > 1:935515/1‑150 (MQ=255) ctTGAACAGCGCGTCAATAGCCGCTAACCGCACAAAAGCTGTTAATGTATGCCGCCGCGAAATTCGACCCACGGGGTCGCGCGGCGACATTGACCTGACTGTCGGCCAGATCCGTTTTGAATAAAGT‑TCATTCGCCGCCCATGCGCTATg > 1:435977/1‑150 (MQ=255) aaCAGCGCGTCAATAGCCGCTAACCGCACAAAAGCTGTTAATGTATGCCGCCGCGAAATTCGACCCACGGGGTCGCGCGGCGACATTGACCTGACTGTCGGCCAGATCCGTTTTGAATAAAGT‑TCATTCGCCGCCCATGCGCTATGAccc < 1:1201202/150‑1 (MQ=255) cttCAATAGCCGCTAACATCTCAAAAGCTGTTAATGTATGCCGCCGCGAAATTGGACTCACGGGGTCGCGCGGCGACAGTGACCTGACTGTCGGCCAGATCCGTTTTAAATAAAGT‑TCATTCGCCGCCCATGCGCTATGACCCCcgcggg < 2:302268/148‑3 (MQ=255) gCTAACCGCACAAAAGCTGTTAATGTATGCCGCCGCGAAATTCGACCCACGGGGTCGCGCGGCGACATTGACCTGACTGTCGGCCAGATCCGTTTTGAATAAAGT‑TCATTCGCCGCCCATGCGCTATGACCCCCGCGAGCTCACAGACGa > 2:525706/1‑150 (MQ=255) aaCCGCACAAAAGCTGTTAATGTATGCCGCCGCGAAATTCGACCCACGGGGTCGCGCGGCGACATTGACCTGACTGTCGGCCAGATCCGTTTTGAATAAAGT‑TCATTCGCCGCCCATGCGCTATGAcccc < 1:767011/130‑1 (MQ=255) aaCCGCACAAAAGCTGTTAATGTATGCCGCCGCGAAATTCGACCCACGGGGTCGCGAGGCGACATTGACCTGACTGTCGGCCAGATCCGTTTTGAATAAAGT‑TCATTCGCCGCCCATGCGCTATGAcccc > 2:767011/1‑130 (MQ=255) aCCGCACAAAAGCTGTTAATGTATGCCGCCGCGAAATTCGACCCACGGGGTCGCGCGGCGACATTGACCTGACTGTCGGCCAGATCCGTTTTGAATAAAGT‑TCATTcgcc < 2:172820/110‑1 (MQ=255) aCCGCACAAAAGCTGTTAATGTATGCCGCCGCGAAATTCGACCCACGGGGTCGCGCGGCGACATTGACCTGACTGTCGGCCAGATCCGTTTTGAATAAAGT‑TCATTcgcc > 1:172820/1‑110 (MQ=255) aCCGCACAAAAGCTGTTAATGTATGCCGCCGCGAAATTCGACCCACGGGGTCGCGCGGCGACATTGACCTGACTGTCGGCCAGATCCGTTTTGAATAAAGT‑TCATTCGCCGCCCATGCGCTATGACCCCCGCGAGCTCACAGACGAagag > 1:1165399/1‑150 (MQ=255) aCCGCACAAAAGCTGTTAATGTATGCCGCCGCGAAATTCGACCCACGGGGTCGCGCGGCGACATTGACCTGACTGTCGGCCAGATCCGTTTTGAATAAAGT‑TCATTCGCCGCCCATGCGCTATGACCCCCGCGAGCTCACAGACGAagag < 1:493249/150‑1 (MQ=255) cGCACAAAAGCTGTTAATGTATGCCGCCGCGAAATTCGACCCACGGCGACGCGCGGCGACATTGACCTGACTGTCGGCCAGATCCGTTTTGAATAAAGT‑TCATTCGCCGCCCATGCGCTATGACCCCCGCGAGCTCACAGACGAAGAGtt > 2:168649/1‑150 (MQ=255) gCACAAAAGCTGTTAATGTATGCCGCCGCGAAATTCGACCCACGGGGTCGCGCGGCGACATTGACCTGACTGTCGGCCAGATCCGTTTTGAATAAAGT‑TCATTCGCCGCCCATGCGCTATGACCCCCGCGAGCTCACAGACGCAGAGTtg > 2:242325/1‑150 (MQ=255) ttcgatcTGTTAATGTAGGCCGCCGCGACATTAGCCCCACGGGGTCGCGCGGCGACATTGACCTGACTGTCGGCCAGATCCGTTTTGAATAAAGT‑TCATTCGCCGCCCATGCGCTATGACCCCCGCGAGCTCACAGACGAAGAGTtggtg < 2:801519/144‑1 (MQ=255) caAAAGCTGTTAATGTATGCCGCCGCGAAATTCGACCCACGGGGTCGCGCGGCGACATTGACCTGACTGTCGGCCAGATCCGTTTTGAATAAAGT‑TCATTCGCCGCCCATGCGCTATGACCCCCGCGAGCTCACAGACGAAGAGTtggtg < 2:935515/150‑1 (MQ=255) cgacagtcaggtcaatgtcgccgcgcgaccccgtgggtcgaatttcgcggcgacatTGACCTGACTGTCGGCCAGATCCGTTTTGAATAAAGT‑TCATTCGCCGCCCATGCGCTATGACCCCCGCGAGCTCACAGACGAAGAGTTGGTGgc > 1:293834‑M2/57‑150 (MQ=255) tGTTAATGTATGCCGCCGCGAAATTCGACCCACGGGGTCGCGCGGCGACATTGACCTGACTGTCGGCCAGATCCGTTTTGAATAAAGT‑TCATTCGCCGCCCATGCGCTATGACCCCCGCGAGCTCACAGACGAAGAGTTGGTGGCGCGtt < 1:525706/150‑1 (MQ=255) ttAATGTATGCCGCCGCGAAATTCGACCCACGGGGTCGCGCGGCGACATTGACCTGACTGTCGGCCAGATCCGTTTTGAATAAAGT‑TCATTc > 1:406061/1‑92 (MQ=255) ttAATGTATGCCGCCGCGAAATTCGACCCACGGGGTCGCGCGGCGACATTGACCTGACTGTCGGCCAGATCCGTTTTGAATAAAGT‑TCATTc < 2:406061/92‑1 (MQ=255) aaTGTATGCCGCCGCGAAATTCGACCCACGGGGTGGGGCGTCGACATTGACCTGACTGTCGGCCAGATCCGTTTTGCATAAGGT‑TCATTCACCGCCCATGCGCTATGACCCCCGCGAGCTCACAGACGAAGAGTTGGTGGCGCGTTCGCa > 1:96782/1‑150 (MQ=255) aaTGTATGCCGCCGCGAAATTCGACCCACGGGGTCGCGCGGCGACATTGACCTGACTGTCGGCCAGATCCGTTTTGAATAAAGT‑TCATTCGCCGCCCATGCGCTATGACCCCCGCGAGCTCACAGACGAAGAGTTGGTGGCGCGTTCGCa < 2:26290/150‑1 (MQ=255) aaTGTATGCCGCCGCGAAATTCGACCCACGGGGTCGCGCGGCGACATTGACCTGACTGTCGGCCAGATCCGTTTTGAATAAAGT‑TCATTCGCCGCCCATGCGCTATGACCCCCGCGAGCTCACAGACGAAGAGTTGGTGGCGCGTTCGCa > 1:48287/1‑150 (MQ=255) aaTGTATGCCGCCGCGAAATTCGACCCACGGGGTCGCGCGGCGACATTGACCTGACTGTCGGCCAGATCCGTTTTGAATAAAGT‑TCATTCGCCGCCCATGCGCTATGACCCCCGCGAGCTCACAGACGAAGAGTTGGTGGCGCGTTCGCa < 1:709372/150‑1 (MQ=255) aaTGTATGCCGCCGCGAAATTCGACCCACGGGGTCGCGCGGCGACATTGACCTGACTGTCGGCCAGATCCGTTTTGAATAAAGT‑TCATTCGCCGCCCATGCGCTATGACCCCCGCGAGCTCACAGACGAAGAGTTGGTGGCGCGTTCGCa > 2:266593/1‑150 (MQ=255) tcaatgtcgccgcgcgaccccgtgggtcgaatttcgcggcggcatTGACCTGACTGTCGGCCAGATCCGTTTTGAATAAAGT‑TCATTCGCCGCCCATGCGCTATGACCCCCGCGAGCTCACAGACGAagag < 2:858670‑M2/86‑1 (MQ=255) tcaatgtcgccgcgcgaccccgtgggtcgaatttcgcggcggcatTGACCTGACTGTCGGCCAGATCCGTTTTGAATAAAGT‑TCATTCGCCGCCCATGCGCTATGACCCCCGCGAGCTCACAGACGAagag > 1:858670‑M2/46‑131 (MQ=255) aatgtcgccgcgcgaccccgtgggtcgaatttcgcggcggcatTGACCTGACTGTCGGCCAGATCCGTTTTGAATAAAGT‑TCATTCGCCGCCCATGCGCTATGACCCCCGCGAGc > 1:780331‑M2/44‑115 (MQ=255) aatgtcgccgcgcgaccccgtgggtcgaatttcgcggcggcatTGACCTGACTGTCGGCCAGATCCGTTTTGAATAAAGT‑TCATTCGCCGCCCATGCGCTATGACCCCCGCGAGc < 2:780331‑M2/72‑1 (MQ=255) GCCGCCGCGAAATTCGACCCACGGGGTCGCGCGGCGACATTGACCTGACTGTCGGCCAGATCCGTTTTGAATAAAGT‑TCATTCGCCGCCCATGCGCTATGACCCCCGCGAGCTCACAGACGAAGAGTTGGTGGCGCGTTCGCATgaggag > 2:770777‑M1/1‑150 (MQ=255) ggcccACGGGGTCGCGCGGCGACATTGACCTGACTGTCGGCCAGATCCGTTTTGAATAAAGT‑TCATTCGCCGCCCATGCGCTATGACCCCCGCGAGCTCACAGACGAAGAGTTGGTGGCGCGTTCGCATGAGGAGCTGTACCACGTTAcc < 1:504678/148‑1 (MQ=255) gACCCACGGGGTCGCGCGGCGACATTGACATGAATACCGTCCAGATCCGTTTTGAATAAAGT‑TCATTCACCGCCCATGCGCTATGACCCCCGCGAGCTCACAGACGAAGAGTTGGTGGCGCGTTCGCATGAGGAGCTGTACCACGTTAcc < 2:96782/150‑1 (MQ=255) accccgtgggTCGCGCGGCGACATTGACCTGACTGTCGGCCAGAAACGTTTTGAATAAAGT‑TCATTCGCCGCCCATGCGCTATGACCCCCGCGAGCTCACAGACGAAAAGTTGGTGGCGCGTTCGCATGAGGAGCTGTACCACGTTAccc > 1:1097932/8‑150 (MQ=255) cccACGGGGTCGCGCGGCGACATTGACCTGACTGTCGGCCAGATCCGTTTTGAATAAAGT‑TCATTCGCCGCCCATGCGCTATGACCCCCGCGAGCTCACAGACGAAGAGTTGGTGGCGCGTTCGCATGAGGAGCTGTACCACGTTACCcg > 1:134518/1‑150 (MQ=255) ccACGGGGTCGCGCGGCGACATTGACCTGACTGTCGGCCAGATCCGTTTTGAATAAAGT‑TCATTCGCCGCCCATGCGCTATGACCCCCGCGAGCTCACAGACGAAGAGTTGGTGGCGCGTTCGCATGAGGAGCTGTACCACGTTACCcgc > 1:773168/1‑150 (MQ=255) ccACGGGGTCGCGCGGCGACATTGACCTGACTGTCGGCCAGATCCGTTTTGAATAAAGT‑GCATTCGCCGCCCATGCGCTATGACCCCCGCGAGCTCACAGACGAAGAGTTGGTGGCGCGTTCGCATGAGGAGCTGTACCACGTTACCcgc > 2:1088898/1‑150 (MQ=255) cGGGGTCGCGCGGCGACATTGACCTGACTGTCGGCCAGATCCGTTTTGAATAAAGT‑TCATTCGCCGCCCATGCGCTATGACCCCcgc < 2:809725/87‑1 (MQ=255) cGGGGTCGCGCGGCGACATTGACCTGACTGTCGGCCAGATCCGTTTTGAATAAAGT‑TCATTCGCCGCCCATGCGCTATGACCCCcgc > 1:809725/1‑87 (MQ=255) ggggTCGCGCGGCGACATTGACCTGACTGTCGGCCAGATCCGTTTTGAATAAAGT‑TCATTCGCCGCCCATGCGCTATGACCCCCGCGAGCTCACAGACGAAGAGTTGGTGGCGCGTTCGCATGAGGAGCTGTACCACGTTACCCGCGCCt < 2:134518/150‑1 (MQ=255) cgACATTGACCTGACTGTCGGCCAGATCCGTTTTGAA‑AAAGTGTCATTCGCCGCCCATGCGCTATGACCCCCGCGAGCTCACAGACGAAGAGTTGGTGGCGCGTTCGCATGAGGAGCTGTACCACGTTACCCGCGCCTATGAAGAGCTCa < 1:918301/150‑1 (MQ=255) gACATTGACCTGACTGTCGGCCAGATCCGTTTTGAATAAAGT‑TCATTCGCCGCCCATGCGCTATGACCCCCGCGAGCTCACAGACGAAGAGTTGGTGGTGCGTTAAAATGAAGACCCGTACGGCGAGACCCGCGCCGATGAAGAGCTCAt > 2:918301/1‑150 (MQ=255) | GCTGACCGATGATGGCGAACTGGTGTCACTGGCTAACCGCGAGCTGCTTGAACAGCGCGTCAATAGCCGCTAACCGCACAAAAGCTGTTAATGTATGCCGCCGCGAAATTCGACCCACGGGGTCGCGCGGCGACATTGACCTGACTGTCGGCCAGATCCGTTTTGAATAAAGT‑TCATTCGCCGCCCATGCGCTATGACCCCCGCGAGCTCACAGACGAAGAGTTGGTGGCGCGTTCGCATGAGGAGCTGTACCACGTTACCCGCGCCTATGAAGAGCTCAT > NC_002947/2379516‑2379796 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |