New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2456877 =	41 (0.910)	8 (0.220)	8/196	NT	22.4%	intergenic (+85/‑96)	gapB/PP_2150	glyceraldehyde‑3‑phosphate dehydrogenase/thiamine biosynthesis lipoprotein
	?	NC_002947	2456941 =	23 (0.640)					intergenic (+149/‑32)	gapB/PP_2150	glyceraldehyde‑3‑phosphate dehydrogenase/thiamine biosynthesis lipoprotein

TCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGATTATCGCTGCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACCGGCAACCGAGAAACCCTACTGTGCGCACAGCCCTACTGTTCATTCTGCTGCTACTCACCGCCTGCAACCAAGGCCCCACCCTGGAGCGCCTGGGTGGTCCGACCATGGGCAGCAGCTACAGCATCCAGTACGTCCGCG  >  NC_002947/2456794‑2457090                                                                                                                                                     |                                                                                                                                                      tCGCTTGTAAGGTAATGTAAGATCTTGAACTTTCGGGTTCCCGTTTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGATTATCGCTGCCCCTGTAGGAGCGGGTTTACCCGCGAaga                                                                                                                                                      <  2:579641/150‑1 (MQ=38)     ttGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTCTTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGATTATCGCTGCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCa                                                                                                                                                 <  2:806905/150‑1 (MQ=255)                   aaaaaCGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTAAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGATTATCGCTGCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACCGGCAACCga                                                                                                                                   <  1:918100/150‑1 (MQ=255)                    aaaaCGGGAACCTTCGGGTTCCCGTTTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGATTATCGCTGCNCCTGTAGGAGCGGGTTTANCCGCGAAGAGGCCAGCACCGGCAACCgn                                                                                                                                   <  1:278490/150‑2 (MQ=255)                     aaaCGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGATTATCGCTGCCCCTGTAGGCGCGGGTTTACCCGCGAAGAGGCCAGCACCGGCAACCgaga                                                                                                                                 <  1:1148251/150‑1 (MQ=255)                           gAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGTTAAACCCGCTCCTACAGGATTATCGCTGCACCTGTAGGAGACGGTTTACCCGCGAAGAGGCGAGCACCGGCCACCGAGAAACCCt                                                                                                                           >  2:510423/1‑150 (MQ=39)                                  cGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGATTATCGCTGCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACCGGCAACCGAGAAACCCTACTGTgc                                                                                                                    <  2:655354/150‑1 (MQ=255)                                     gTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGATTATCGCTGCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACCGGCAACCGAGAAACCCTACTGTGCGca                                                                                                                 >  1:838587/1‑150 (MQ=255)                                          cG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGATTATCGCTGCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACCGGCAACCGAGAAACCCTACTGTGCGCACAGcc                                                                                                            <  1:126050/150‑1 (MQ=255)                                           g‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGATTATCGCTGCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACCGGCAACCGAGAAACCCTACTGTGCGCACAGccc                                                                                                           <  1:518614/150‑1 (MQ=255)                                              ttttttttATTCTGAGTGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGATTATCGCTGCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACCGGCAACCGAGAAACCCTACTGTGCGCACAGCCCTa                                                                                                         <  2:838587/150‑1 (MQ=255)                                                       ttCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGATTATCGCTGCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACCGGCAACCGAGAAACCCTACTGTGCGCACAGCCCTACTGTTCAtt                                                                                                >  2:384781/1‑150 (MQ=255)                                                       ttCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCGCCTACAGGATTATCGCTGCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACCGGCAACCGAGAAACCCTACTGTGCGCACAGCCCTACTGTTCAtt                                                                                                <  1:382205/150‑1 (MQ=255)                                                           ggaTGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTGAGCCCGCGCCCACACGATTCTCGCTCCATGACCAAGATCGTTTTTACCCGCGAAGAGGCCAGCACCGGCAACCGAGAAACCCTACTGTGCGCACAGCCCTACTGTTCATTctgc                                                                                            <  1:1114116/148‑1 (MQ=255)                                                             aTGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGATTATCGCTGCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACCGGNAACCGANAAACCCTACTGTNCGCACAGCCCTACTGTTCATTctgctg                                                                                          <  1:1094254/150‑1 (MQ=255)                                                             aTGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGATTATCGCTGCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACCGGCAACCGAGAAACCCTACTGTGCGCACAGCCCTACTGTTCATTctgctg                                                                                          >  1:1145750/1‑150 (MQ=255)                                                               gtgtgtTGTCAGTGCCGGCCCTTCCGCGGGTATACCCGCTCCCACAGGATTATCGCTGCCCCTGTAGGAGCGGGTTTACCCTCGAAAAGGCCAGCACCGGCAACCGAGAAACCCTACTGTGCGCACAGCCCTACTGTTCATTCTgctgct                                                                                        <  2:510792/150‑1 (MQ=39)                                                                    ttgtCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGATTATCGCTGCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACCGGCAACCGAGAAACCCTACTGTGCGCACAGCCCTACTGTTCATTCTGCTGCTACTcc                                                                                   >  2:133185/1‑149 (MQ=255)                                                                                gCCCTTTCGCGGGTAAACCCGCTCCTACAGGATTATCGCTGCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACCGGCAACCGAGAAACCCTACTGTGCGCACAGCCCTAc                                                                                                        <  2:995128/117‑1 (MQ=255)                                                                                gCCCTTTCGCGGGTAAACCCGCTCCTACAGGATTATCGCTGCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACCGGCAACCGAGAAACCCTACTGTGCGCACAGCCCTAc                                                                                                        >  1:995128/1‑117 (MQ=255)                                                                                   cTTTCGCGGGTAAACCCGCTCCTACAGGATTATCGCTGCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACCGGCAACCGAGAAACCCTACTGTgc                                                                                                                    <  1:835487/102‑1 (MQ=255)                                                                                   cTTTCGCGGGTAAACCCGCTCCTACAGGATTATCGCTGCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACCGGCAACCGAGAAACCCTACTGTgc                                                                                                                    >  2:835487/1‑102 (MQ=255)                                                                                     ttcggtggTAGACCTCCTCCTACTTGTTTAGCGCTGGCCCCGTAGGAGCGGTATTCTCCTTGAAGAGTCCATCACCGCCCATCGAGAAACCCTACTGTGCGCACAGCCCTGCTGTTCATGCTGCTGCTACTCACCGCCTGCAACCAAGGc                                                                  <  2:137754/144‑1 (MQ=255)                                                                                            gtaaacccgctcctacaggggcagcgataatcctgtaggagcgggtttacccgcgaaGAGGCCAGCACCGGCAACCGAGAAACCCTACTGTGCGCACAGCCCTACTGTTCATTCTGCTGCTACTCACCGCCTGCAACCAAGGCCCCAccc                                                           >  2:708264‑M2/58‑150 (MQ=255)                                                                                                ACCCGCCCCTACAGCATTATCGCTGCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACCGGCAACCGAGAAACCCTACTGTGCGCACAGCCCTACTGTTCATTCTGCTGCTACTCACCGCCTGCAACCAAGGCCCCACCCTGGa                                                       >  1:276597‑M1/1‑150 (MQ=255)                                                                                                  ccgctcctacaggggcagcgataatcctgtaggagcgggtttacccgcgaaGAGGCCAGCACCGGCAACCGAGAAACCCTACTGTgcg                                                                                                                   <  1:892196‑M2/37‑1 (MQ=255)                                                                                                  ccgctcctacaggggcagcgataatcctgtaggagcgggtttacccgcgaaGAGGCCAGCACCGGCAACCGAGAAACCCTACTGTgcg                                                                                                                   >  2:892196‑M2/52‑88 (MQ=255)                                                                                                  CCGCTCCTACAGGATTATCGCTGCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACCGGCAACCGAGAAACCCTACTGTGCGCACAGCCCTACTGTTCATTCTGCTGCTACTCACCGCCTGCAACCAAGGCCCCACCCTGGAgc                                                     <  2:855134‑M1/150‑1 (MQ=255)                                                                                                   cgctcctacaggggcagcgataatcctgtaggagcgggtttacccgcgaaGAGGCCAGCACCGGCAACCGAGAAACCCTACTGTGCGCACAGCCCTACTGTTCATTctgc                                                                                            >  2:1049904‑M2/51‑110 (MQ=255)                                                                                                   cgctcctacaggggcagcgataatcctgtaggagcgggtttacccgcgaaGAGGCCAGCACCGGCAACCGAGAAACCCTACTGTGCGCACAGCCCTACTGTTCATTctgc                                                                                            <  1:1049904‑M2/60‑1 (MQ=255)                                                                                                    GCTCCTACAGGATTATCGCTGCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACCGGCAACCGAGAAACCCTACTGTGCGCACAGCCCTACTGTTCATTCTGCTGCTACTCACCGCCTGCAACCAAGGCCCCACCCTGGAgcgc                                                   <  1:145110‑M1/150‑1 (MQ=255)                                                                                                      tcctacaggggcagcgataatcctgtaggagcgggtttacccgcgaaGAGGCCAGCACCGGCAACCGAGAAACCCTACTGTGCGCACAGCCCTACTGTTCATTCTGCTGCTACTCACCGCCTGCAACCAAGGCCCCACCCTGGAGCGCCt                                                 >  2:518838‑M2/48‑150 (MQ=255)                                                                                                        ccACAGGATTATCGCTGCCCCTGTAGGTGCGGGTTCACGCGGGAAGATGCCAGCACCGGCAACCGAGAAACCCTACTGTGCGCACAGCCCTACTGTTCATTCTGCTGCTACTCACCGCCTGCAACCAAGGCCCCACCCTGGAGCGCCTgg                                               >  2:477845‑M1/3‑150 (MQ=255)                                                                                                        CTACAGGATTATCGCTGCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACCGGCAACCGAGAAACCCTACTGTGCGCACAGCCCTACTGTTCATTCTGCTGCTACTCACCGCCTGCAACCAAGGCCCCACCCTGGAGCGCCTgg                                               <  1:703161‑M1/150‑1 (MQ=255)                                                                                                         tacaggggcagcgataatcctgtaggagcgggtttacccgcgaaGAGGCCAGCACCGGCAACCGAGAAACCCTACTGTGCGCACAGCCCTACTGTTCATTCTGCTGCTACTCACCGCCTGCAACCAAGGCCCCACCCTGGAGCGCCTggg                                              >  1:1014105‑M2/45‑150 (MQ=255)                                                                                                           CAGGATTATCGCTGCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACCGGCAACCGAGAAACCCTACTGTGCGCACAGCCCTACTGTTCATTCTGCTGCTACTCACCGCCTGCAACCAAGGCCCCACCCTGGAGCGCCTGggtg                                            >  2:145110‑M1/1‑150 (MQ=255)                                                                                                            AGGATTATCGCTGCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACCGGCAACCGAGAAACCCTACTGTGCGCACAGCCCTACTGTTCATTCtgctgc                                                                                         <  1:318967‑M1/104‑1 (MQ=255)                                                                                                            AGGATTATCGCTGCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACCGGCAACCGAGAAACCCTACTGTGCGCACAGCCCTACTGTTCATTCtgctgc                                                                                         >  2:318967‑M1/1‑104 (MQ=255)                                                                                                              gggcagcgataatcctgtaggagcgggtttacccgcgaaGAGGCCAGCACCGGCAACCGAGAAACCCTACTGTGCGCACAGCCCTACTGTTCATTCTGCTGCTACTCACCGCCTGCAACCAAGGCCCCACCCTGGAGCGCCTGGGTGGTc                                         >  2:921554‑M2/40‑150 (MQ=255)                                                                                                              GATTATCGCTGCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACCGGCCACCGAGAAACCCTACTGTGCGCACAGCCCTACTGTTCATTCTGCTGCTACTCACCGCCTGCAACCAAGGCCCCACCCTGGAGCGCCTGGGTGGTc                                         <  2:5480‑M1/150‑1 (MQ=255)                                                                                                              GATTATCGCTGCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACCGGCAACCGAGAAACCCTACTGTGCGCACAGCCCTACTGTTCATTCTGCTGCTACTCACCGCCTGCAACCAAGGCCCCACCCTGGAGCGCCTGGGTGGTc                                         >  1:384781‑M1/1‑150 (MQ=255)                                                                                                               aTTATCGCTGCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACCGGCAACCGAGAAACCCTACTGTGCGCACAGCCCTACTGTTCATTCTGCTGCTACTCACCGCCTGCAACCAAGGCCCCACCCTGGAGCGCCTGGGTGGTcc                                        <  2:611461/150‑1 (MQ=255)                                                                                                                        gCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACCGGCAACCGAGAAACCCTACTGTGCGCACAGCCCTACTGTTCATTCTGCTGCTACTCACCGCCTGCAACCAAGGCCCCACCCTGGAGCGCCTGGGTGGTCCGACCATggg                               <  1:855134/150‑1 (MQ=255)                                                                                                                           cctgtaggagcgggtttacccgcgaaGAGGCCAGCACCGGCAACCGAGAAACCCTACTGTGCGCACAGCCCTACTGTTCATTCTGCTGCTACTCACCGCCTGCAACCAAGGCCCCACCCTGGAGCGCCTGGGTGGTCCGACCATGGgcag                            <  1:921554‑M2/124‑1 (MQ=255)                                                                                                                            ctgtagaagcgggtttacccgcgaaGAGGCCAGCACCGGCAACCGAGAAACCCTACTGTGCGCACAGCCCTACTGTTCATTCTGCTGCTACTCACCGCCTGCAACCAAGGCCCCACCCTGGAGCGCCTGGGTGGTCCGACCATGGgcagc                           >  2:172341‑M2/26‑150 (MQ=255)                                                                                                                              gtaggagcgggtttacccgcgaaGAGGCCAGCACCGGCAACCGAGAAACCCTACTGTGCGCACAGCCCTACTGTTCATTCTGCTGCTACTCACCGCCTGCAACCAAGGCCCCACCCTGGAGCGCCTGGGTGGTCCGACCATGGGcagcag                         >  1:889664‑M2/24‑150 (MQ=255)                                                                                                                                aGGAGAGGGTTTACTAGCCAAGGGGGCAACACCGGCATCCTATAAACCCTACTGTGCGCACAGCCCTGTCGCCCATTCTGCTGCTACTCACCGCCTGCAACCAAGGCCCCACCCTGGAGCGCCTGGGTGGTCCGACCATGGGCAGCAGCt                       <  1:510423/150‑1 (MQ=255)                                                                                                                                  gagcgggtttacccgcgaaGAGGCCAGCACCGGCAACCGAGAAACCCTACTGTGCGCACAGCCCTACTGTTCATTCTGCTGCTACTCACCGCCTGCAACCAAGGCCCCACCCTGGAGCGCCTGGGTGGTCCGACCATGGGCAGCAGCTAc                     <  1:518838‑M2/131‑1 (MQ=255)                                                                                                                                            acccgcgaaGAGGCCAGCACCGGCAACCGAGAAACCCTACTGTGCGCACAGCCCTACTGTTCATTCTGCTGCTACTCACCGCCTGCAACCAAGGCCCCACCCTGGAGCGCCTGGGTGGTCCGACCATGGGCAGCAGCTACAGCATCCAGt           <  1:708264‑M2/141‑1 (MQ=255)                                                                                                                                              ccgcgaaGAGGCCAGCACCGGCAACCGAGAAACCCTACTGTGCGCACAGCCCTACTGTTCATTCTGCTGCTACTCACCGCCTGCAACCAAGGCCCCACCCTGGAGCGCCTGGGTGGTc                                         >  1:903486‑M2/8‑118 (MQ=255)                                                                                                                                              ccgcgaaGAGGCCAGCACCGGCAACCGAGAAACCCTACTGTGCGCACAGCCCTACTGTTCATTCTGCTGCTACTCACCGCCTGCAACCAAGGCCCCACCCTGGAGCGCCTGGGTGGTc                                         <  2:903486‑M2/111‑1 (MQ=255)                                                                                                                                              ccgcgaaGAGGCCAGCACCGGCAACCGAGAAACCCTACTGTGCGCACAGCCCTACTGTTCATTCTGCTGCTACTCACCGCCTGCAACCAAGGCCCCACCCTGGAGCGCCTGGGTGGTCCGACCATGGGCAGCAGCTACAGCATCCAGTAc         >  2:1059094‑M2/8‑150 (MQ=255)                                                                                                                                                gcgaaGAGGCCAGCACCGGCAACCGAGAAACCCTACTGTGCGCACAGCCCTACTGTTCATTCTGCTGCTACTCACCGCCTGCAACCAAGGCCCCACCCTGGAGCGCCTGGGTGGTCCGACCATGGGCAGCAGCTACAGCATCCAGTACGt       >  2:848577‑M2/6‑150 (MQ=255)                                                                                                                                                 cgaaGAGGCCAGCACCGGCAACCGAGAAACCCTACTGTGCGCACAGCCCTACTGTTCATTCTGCTGCTACTCACCGCCTGCAACCAAGGCCCCACCCTGGAGCGcc                                                  <  1:246013‑M2/102‑1 (MQ=255)                                                                                                                                                 cgaaGAGGCCAGCACCGGCAACCGAGAAACCCTACTGTGCGCACAGCCCTACTGTTCATTCTGCTGCTACTCACCGCCTGCAACCAAGGCCCCACCCTGGAGCGcc                                                  >  2:246013‑M2/5‑106 (MQ=255)                                                                                                                                                     gagGCCAGCACCGGCAACCGAGAAACCCTACTGTGCGCACAGCCCTACTGTTCATTCTGCTGCTACTCACCGCCTGCAACCAAGGCCCCACCCTGGAGCGCCTGGGTGGTCCGACCATGGGCAGCAGCTACAGCATCCAGTACGTCcgcg  >  2:675226/1‑150 (MQ=255)                                                                                                                                                     |                                                                                                                                                      TCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGATTATCGCTGCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACCGGCAACCGAGAAACCCTACTGTGCGCACAGCCCTACTGTTCATTCTGCTGCTACTCACCGCCTGCAACCAAGGCCCCACCCTGGAGCGCCTGGGTGGTCCGACCATGGGCAGCAGCTACAGCATCCAGTACGTCCGCG  >  NC_002947/2456794‑2457090

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.