| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4114361 | 46 (1.020) | 5 (0.120) | 4/222 | NT | 9.8% | intergenic (+64/+82) | PP_3619/ycaO | hypothetical protein/ribosomal protein S12 methylthiotransferase accessory factor |
| ? | NC_002947 | = 4114406 | 51 (1.260) | intergenic (+109/+37) | PP_3619/ycaO | hypothetical protein/ribosomal protein S12 methylthiotransferase accessory factor | |||||
GAGGCTTTCGAAAGTGGGCCTGCTAAGCCCGAATAGTCACCACCTGAAGTGGATAGGAAGAGAACGCTATGCGCCTGGATGGCAACGCGGCAAGCCAGCGTCCACAGGTTCGGCACAGATCTCAAGAGCGGTGCAATACCTGTGGCGCTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCGGGCCGCGTGCAGCTTCTTGTAGCTGTCGATCAGGCGCAGGTGGCGATCAAGGCCTTCGAGCTTCATGCTGGTCGGGGTCAGGCCATGGAAGCGGA > NC_002947/4114262‑4114555 | gAGGCTTTCGAAAGTGGGCCTGCTAAGCCCGAATAGTCACCACCTGAAGTGGATAGGAAGAGAACGCTATGCGCCTGGATGGCAACGCGGCAAGCCAGCGTCCACAGGTTCGGCACAGATCTCAAGAGCGGTGCAATACCTGTGGcgctg < 1:993656‑M2/150‑6 (MQ=255)gAGGCTTTCGAAAGTGGGCCTGCTAAGCCCGAATAGTCACCACCTGAAGTGGATAGGAAGAGAACGCTATGCGCCTGGATGACAACGCGGCAAGCCAGCGTCCACAGGTTCGGCACAGATCTCAAGAGCGGTGCAATACCTGTGGcgctg < 2:443723‑M2/150‑6 (MQ=255) tCGAAAGTGGGCCTGCTAAGCCCGAATAGTCACCACCTGAAGTGGATAGGAAGAGAACGCTATGCGCCTGGATGGCAACGCGGCAAGCCAGCGTCCACAGGTTCGGCACAGATCTCAAGAGCGGTGCAATACCTGTGGcgctggcttgcc < 2:759000‑M2/150‑13 (MQ=255) gCCTGCTAAGCCCGAATAGTCACCACCTGAAGTGGATAGGAAGAGAACGCTATGCGCCTGGATGGCAACGCGGCAAGCCAGCGTCCACAGGTTCGGCACAGATCTCAAGAGCGGTGCAATACCTGTGGCGCTGGCTTGCCGGCGATGAtt < 1:1024775/150‑1 (MQ=255) gCTAAGCCCGAATAGTCACCACCTGAAGTGGATAGGAAGAGAACGCTATGCGCCTGGATGGCAACGCGGCAAGCCAGCGTCCACAGGTTCGGCACAGATCTCAAGAGCGGTGCAATACCTGTGGCGCTGGCTTGCCGGCGATGATTGGgc > 2:145580/1‑150 (MQ=255) gCTAAGCCCGAAAAGTCACCACCTGAAGTGTATATGAAGAGAACGCTATGCGCCTGGCTGGCAACGCGGCAAGCCAACGTCCACAGGTTCGGCACAGATCTCAAGAGCGGTGCAATACCTGTGGCGCTGGCTTGCCGGCGATGATTGGgc > 2:188330/1‑150 (MQ=255) tAAGCCCGAATAGTCACCACCTGAAGTGGATAGGAAGAGAACGCTATGCGCCTGGATGGCAACGCGGCAAGCCAGCGTCCACAGGTTCGGCACAGATCTCAAGAGCGGTGCAATACCTGTGGCGCTGGCTTGCCGGCGATGATTGGgcgc > 2:442508/1‑150 (MQ=255) aaGCCCGAATAGTCACCACCTGAAGTGGATAGGAAGAGAACGCTATGCGCCTGGATGGCAACGCGGCAAGCCAGCGTCCACAGGTTCGGCACAGATCTCAAGAGCGGTGCAATACCTGTGGCGCTGGCTTGCCGGCGATGATTGGGCGCa < 2:411979/150‑1 (MQ=255) cccGAATAGTCACCACCTGAAGTGGATAGGAAGAGAACGCTATGCGCCTGGATGGCAACGAGACAAGCCAGCGTCCACAGGTTATGCACAGATCTAAAGAGCGGTGCAATACCTGTGACGCTGGCTTGCCGACGATGATAGGACTCAgcg > 2:152535/1‑150 (MQ=255) gAATAGTCACCACCTGAAGTGGATAGGAAGAGAACGCTATGCGCCTGGATGGCAACGCGGCAAGCCAGCGTCCACAGGTCCGGCGCAGATCTCAAGAGCGGTGGAAGACCTGTGGCGATGCTTTGCGCGCGATGATTGGGCGCAGCGCCt > 1:327069/1‑150 (MQ=255) tAGTCACCACCTGAAGTGGATAGGAAGAGAACGCTATGCGCCTGGATGGCAACGCGGCAAGCCAGCGTCCACAGGTTCGGCACAGATCTCAAGAGCGGTGCAATACCTGTGGCGCTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTc > 1:1071402/1‑150 (MQ=255) gTCACCACCTGAAGTGGATAGGAAGAGAACGCTATGCGCCTGGATGGCAACGCGGCAAGCCAGCGTCCACAGGTTCGGCACAGATCTCAAGAGCGGTGCAATACCTGTGGCGCTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAg < 1:145580/150‑1 (MQ=255) tCACCACCTGAAGTGGATAGGAAGAGAACGCTATGCGCCTGGATGGCAACGCGGCAAGCCAGCGTCCACAGGTTCGGCACAGATCTCAAGAGCGGTGCAATACCTGTGGCGCTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAgg > 1:921709/1‑150 (MQ=255) caccacCTGAAGTGGATAGGAAGAGAACGCTATGCGCCTGGATGGCAACGCGGCAAGCCAGCGTCCACAGGTTCGGCACAGATCTCAAGAGCGGTGCAATACCTGTGGCGCTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGc > 2:298785/1‑150 (MQ=255) accaccTGAAGTGGATAGGAAGAGAACGCTATGCGCCTGGATGGCAACGCGGCAAGCCAGCGTCCACAGGTTCGGCACAGATCTCAAGAGCGGTGCAATACCTGTGGCGCTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCg > 1:861511/1‑150 (MQ=255) accaccTGAAGTGGATAGGAAGAGAACGCTATGCGCCTGGATGGCAACGCGGCAAGCCAGCGTCCACAGGTTCGGCACAGATCTCAAGAGCGGTGCAATACCTGTGGCGCTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCg > 2:570536/1‑150 (MQ=255) caccTGAAGTGGATAGGAAGAGAACGCTATGCGCCTGGATGGCAACGCGGCAAGCCAGCGTCCACAGGTTCGGCACAGATCTCAAGAGCGGTGCAATACCTGTGGCGCTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGaa < 1:298785/150‑1 (MQ=255) ccTGAAGTGGATAGGAAGAGAACGCTATGCGCCTGGATGGCAACGCGGCAAGCCAGCGTCCACAGGTTCGGCACAGATCTCAAGAGCGGTGCAATACCTGTGGCGCTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACt > 2:539825/1‑150 (MQ=255) ggATAGGAAGAGAACGCTATGCGCCTGGATGGCAACGCGGCAAGTCAGCGTCCACAGGTTCGGCACAGATCTCAAGAGCGGTGCAATACCTGTGGCGCTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCgg < 2:397101/150‑1 (MQ=255) ggATAGGAAGAGAACGCTATGCGCCTGGATGGCAACGCGGCAAGCCAGCGTCCACAGGTTCGGCACAGATCTCAAGAGCGGTGCAATACCTGTGGCGCTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCgg < 1:442508/150‑1 (MQ=255) aGGAAGAGAACGCTATGCGCCTGGATGGCAACGCGGCAAGCCAGCGTCCACAGGTTCGGCACAGATCTCAAGAGCGGTGCAATACCTGTGGCGCTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCGGGCcg > 2:590172/1‑150 (MQ=255) agaACGCTATGCGCCTGGATGGCAACGCGGCAAGCCAGCGTCCACAGGTTCGGCACAGATCTCAAGAGCGGTGCAATACCTGTGGCGCTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCGGGCCGCGt > 2:573259/1‑147 (MQ=255) agaACGCTATGCGCCTGGATGGCAACGCGGCAAGCCAGCGTCCACAGGTTCGGCACAGATCTCAAGAGCGGTGCAATACCTGTGGCGCTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCGGGCCGCGt < 1:573259/147‑1 (MQ=255) aaCGCTATGCGCCTGGATGGCAACGCGGCAAGCCAGCGTCCACAGGTTCGGCACAGATCTCAAGAGCGGTGCAATACCTGTGGCGCTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCGGGCCGCGTGCAGc < 2:1071402/150‑1 (MQ=255) gCTATGCGCCTGGATGGCAACGCGGCAAGCCAGCGTCCACAGGTTCGGCACAGATCTCAAGAGCGGTGCAATACCTGTGGCGCTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCGGGCCGCGTGCAGcttc > 2:998317/1‑150 (MQ=255) gCTATGCGCCTGGATGGCAACGCGGCAAGCCAGCGTCCACAGGTTCGGCACAGATCTCAAGAGCGGTGCAATACCTGTGGCGCTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCGGGCCGCGTGCAGcttc < 2:1207286/150‑1 (MQ=255) gCTATGCGCCTGGATGGCAACGCGGCAAGCCAGCGTCCACAGGTTCGGCACAGATCTCAAGAGCGGTGCAATACCTGTGGCGCTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCGGGCCGCGTGCAGcttc < 1:998317/150‑1 (MQ=255) tGCGCCTGGATGGCAACGCGGCAAGCCAGCGTCCACAGGTTCGGCACAGATCTCAAGAGCGGTGCAATACCTGTGGCGCTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCGGGCCGCGTGCAGCTTCTTGt < 1:539825/150‑1 (MQ=255) cgcCTGGATGGCAACGCGGCAAGCCAGCGTCCACAGGTTCGGCACAGATCTCAAGAGCGGTGCAATACCTGTGGCGCTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCGGGCCGCGTGCAGCTTCTTGTAg < 1:217292/150‑1 (MQ=255) ccTGGATGGCAACGCGGCAAGCCAGCGTCCACAGGTTCGGCACAGATCTCAAGAGCGGTGCAATACCTGTGGCGCTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCGGGCCGCGTGCAGCTTCTTGTAGCt > 2:162396/1‑150 (MQ=255) cAACGCGGCAAGCCAGCGTCCACAGGTTCGGCACAGATCTCAAGAGCGGTGCAATACCTGTGGCGCTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCGGGCCGCGTGCAGCTTCTTGTAGCTGTCGATCAg < 1:590172/150‑1 (MQ=255) cgGCAAGCCAGCGTCCACAGGTTCGGCACAGATCTCAAGAGCGGTGCAATACCTGTGGCGCTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCGGGCCGCGTGCAGCTTCTTGTAGCTGTCGATCAGGCGCa < 2:921709/150‑1 (MQ=255) cAAGCCAGCGTCCACAGGTTCGGCACAGATCTCAAGAGCGGTGCAATACCTGTGGCGCTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCGGGCCGCGTGCAGCTTCTTGTAGCTGTCGATCAGGCGCAGGt < 1:759000/150‑1 (MQ=255) ccAGCGTCCACAGGTTCGGCACAGATCTCAAGAGCGGTGCAATACCTGTGGcgctggcttgccgcgttgccatccaggcgcatagcgttctcttcctatccacttcaggtggtgactattcgggcttagcaggcccactttcgaaagcct < 2:112160‑M2/150‑100 (MQ=255) ccAGCGTCCACAGGTTCGGCACAGATCTCAAGAGCGGTGCAATACCTGTGGacgctggcttgccgcgttgccatccaggcgcatagcgttctcttcctatccacttcaggtggtgactattcgggcttagcaggcccactttcgaaagcc < 2:773246‑M2/150‑100 (MQ=255) cAGCGTCCACAGGTTCGGCACAGATCTCAAGAGCGGTGCAATACCTGTGGCGCTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCGGGCCGCGTGCAGCTTCTTGTAGCTGTCGATCAGGCGCAGGTGGCGa > 2:233564/1‑150 (MQ=255) aGCGTCCACAGGTTCGGCACAGATCTCAAGAGCGGTGCAATACCTGTGGCGCTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCGGGCCGCGTGCAGCTTCTTGTAGCTGTCGATCAGGCGCAGGTGGCGAt > 1:301768/1‑150 (MQ=255) gCGTCCACAGGTTCGGCACAGATCTCAAGAGCGGTGCAATACCTGTGGCGCTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGcc > 1:1195102/1‑100 (MQ=255) gCGTCCACAGGTTCGGCACAGATCTCAAGAGCGGTGCAATACCTGTGGCGCTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGcc < 2:1195102/100‑1 (MQ=255) gTCCACAGGTTCGGCACAGATCTCAAGAGCGGTGCAATACCTGTGGcgctggcttgccgcgttgccatccaggcgcatagcgttctcttcctatcca > 1:891631‑M2/1‑46 (MQ=255) gTCCACAGGTTCGGCACAGATCTCAAGAGCGGTGCAATACCTGTGGcgctggcttgccgcgttgccatccaggcgcatagcgttctcttcctatcca < 2:891631‑M2/97‑52 (MQ=255) tCCACAGGTTCGGCACAGATCTCAAGAGCGGTGCAATACCTGTGGCGCTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCGGGCCGCGTGCAGCTTCTTGTAGCTGTCGATCAGGCGCAGGTGGCGATCAAg < 2:993656/150‑1 (MQ=255) tCCACAGGTTCGGCACAGATCTCAAGAGCGGTGCAATACCTGTGGCGCTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCGGGCCGCGTGCAGCTTCTTGTAGCTGTCGATCAGGCGCAGGTGGCGATCAAg < 2:675222/150‑1 (MQ=255) tCCACAGCTTCGGCACAGATCTCAAGAGCGGTGCAATACCTGTGCCACTATCTTGCCGGCGATGATTGGGCACAACGCCTTTCAGGCGAACTTGGCCCGGGCCGCGTGCAGCTTCTTGTAGCTGTCGATCAGGCGCAGGTGGCGATCAAg < 1:570536/150‑1 (MQ=255) acaGGTTCGGCACAGATCTCAAGAGCGGTGCAATACCTGTGGCGCTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCGGGCCGCGTGCAGCTTCTTGTAGCTGTCGATCAGGCGCAGGTGGCGATCAAGGcc > 2:713795/1‑150 (MQ=255) ggCACAGATCTCAAGAGCGGTGCAATACCTGTGGCGCTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCGGGCCGCGTGCAGcttc > 1:610491/1‑104 (MQ=255) ggCACAGATCTCAAGAGCGGTGCAATACCTGTGGCGCTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCGGGCCGCGTGCAGcttc < 2:610491/104‑1 (MQ=255) caGATCTCAAGAGCGGTGCAATACCTGTGGCGCTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAAGCGAACTTGGCCCGGGCCGCGTGCAGCTTCTTGTAGCTGTCGATCAGGCGCAGGTGGCGATCAAGGCCTTCGAGCTTCAt < 2:538184/150‑1 (MQ=255) aGATCTCAAGAGCGGTGCAATACCTGTGGCGCTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCGGGCCGCGTGCAGCTTCTTGTAGCTGTCGATCAGGCGCAGGTGGCGATCAAGGCCTTCGAGCTTCATg < 1:188330/150‑1 (MQ=255) gagCGGTGCAATACCTGTGGCGCTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCGGGCCGCGTGCAGCTTCTTGTAGCTGTCGATCAGGCGCAGGTGGCGATCAAGGCCTTCGAGCTTCATGCTGGTCcgg < 1:233564/150‑1 (MQ=255) tGCAATACCTGTGGCGCTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCGGGCCGCGTGCAGCTTCTTGTAGCTGTCGATCAgg < 1:1081589/102‑1 (MQ=255) tGCAATACCTGTGGCGCTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCGGGCCGCGTGCAGCTTCTTGTAGCTGTCGATCAgg > 2:1081589/1‑102 (MQ=255) gCAATACCTGTGGcgctggcttgccgcgttgccatccaggcgcatagcgttctcttcctatccacttcaggtggtgactattcgggcttagcaggcccactttcgaaagcctccgccggtggtggcgctgcacggacattgaaaagcttg > 1:112160‑M2/1‑13 (MQ=255) gCAATACCTGTGGCGCTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCGGGCCGCGTGCAGCTTCTTGTAGCTGTCGATCAGGCGCAGGTGGCGATCAAGGCCTTCGAGCTTCATGCTGGTCGGGGTCAGGc > 2:63701/1‑150 (MQ=255) gCAATACCTGTGGCGCTGGCTTGCCGGCGATGAATGGGAGTAGCGCATATCAGGCTAACATCGCCCGGACCGCTTGCAGCTTCTTGTAGCTGTCGATCAGGCGCAGGTGGCGATCAAGGCCTTCGAGCTTCATGCTGGTCGGGGTCAGGc > 1:328293/1‑150 (MQ=255) cAATACCTGTGGCGCTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCGGGCCGCGTGCAGCTTCTTGTAGCTGTCGATCAGGCGCAGGTGGCGATCAAGGCCTTCGAGCTTCATGCTGGTCGGGGTCAGGcc < 2:301768/150‑1 (MQ=255) aCCTGTGGCGCTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCGGGCCGCGTGCAGCTTCTTGTAGCTGTCGATCAGGCGCAGGTGGCGATCAAGGCCTTCGAGCTTCATGCTGGTCGGGGTCAGGCCATgg < 2:861511/150‑1 (MQ=255) cTGTGGCGCTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCGGGCCGCGTGCAGCTTCTTGTAGCTGTCGATCAg < 2:496926/93‑1 (MQ=255) cTGTGGCGCTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCGGGCCGCGTGCAGCTTCTTGTAGCTGTCGATCAg > 1:496926/1‑93 (MQ=255) gtgGCGCTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGGGAACTTGGCCCGGGCCGCGTGCAGCTTCTTGTAGCTGTCGATCAGGCGCAGGTTGCGATCAAGGCCTTCGAGCTTCATGCTGGTCGGGGTCAGGCCATGGAAGc < 1:152535/150‑1 (MQ=255) gcgcTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCGGGCCGCGTGCAGCTTCTTGTAGCTGTCGATCAGGCGCAGGTGGCGATCAAGGCCTTCGAGCTTCATGCTGGTCGGGGTCAGGCCATGGAAGCGGa < 1:713795/150‑1 (MQ=255) | GAGGCTTTCGAAAGTGGGCCTGCTAAGCCCGAATAGTCACCACCTGAAGTGGATAGGAAGAGAACGCTATGCGCCTGGATGGCAACGCGGCAAGCCAGCGTCCACAGGTTCGGCACAGATCTCAAGAGCGGTGCAATACCTGTGGCGCTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCGGGCCGCGTGCAGCTTCTTGTAGCTGTCGATCAGGCGCAGGTGGCGATCAAGGCCTTCGAGCTTCATGCTGGTCGGGGTCAGGCCATGGAAGCGGA > NC_002947/4114262‑4114555 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |