New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4119939	45 (1.000)	4 (0.100)	4/228	NT	8.6%	coding (311/1344 nt)	adhB	alcohol dehydrogenase cytochrome c subunit
	?	NC_002947	= 4119959	44 (1.060)					coding (331/1344 nt)	adhB	alcohol dehydrogenase cytochrome c subunit

CCTGCCATAGCCTGCCGGGTGGCAAACCGTTCGCCGGCGGACTGGAAATGGCCACCCCGCTGGGGGCAATCCACGCCACCAACATCACCCCCGACCGCGACAGCGGCATCGGTAACTACACCCTGGCCGACTTCGACCGCGCCGTGCGCCAGGGTGTCGCGCCGGGTGGCCGACGGCTGTACCCGGCGATGCCTTACCCGTCCTACGCCAAGCTCAGCGATGATGATGTCAAGGCGCTGTATGCGTTCTTCATGCACGGCGTGCAACCGGCGCGGCAGGCCAACCTGGG  >  NC_002947/4119813‑4120101                                                                                                                                                   |                                                                                                                                               ccTGCCATAGCCTGCCGGGTGGCAAACCGTTCGCCGGCGGACTGGAAATGGCCACCCCGCTGGGGGCAATCCAAGGCACCAACATCACCCCCGACCGCGACAGCGGCATCGGTAACTACACCCTGGCCGACTTCGACCGCGCCGTGCgcc                                                                                                                                             <  1:146494‑M2/150‑4 (MQ=255)   tGCCATAGCCTGCCGGGTGGCAAACCGTTCGCCGGCGGACTGGAAATGGCCACCCCGCTGGGGGCAATCCACGCCACCAACATCACCCCCGACCGCGACAGCGGCATCGGTAACTACACCCTGGCCGACTTCGACCGCGCCGTGCgccag                                                                                                                                           >  1:559926‑M2/1‑145 (MQ=255)       aTAGCCTGCCGGGTGGCAAACCGTTCGCCGGCGGACTGGAAATGGCCACCCCGCTGGGGGCAATCCACGCCACCAACATCACCCCCGACCGCGACAGCGGCATCGGTAACTACACCCTGGCCGACTTCGACCGCGCCGTGCgc                                                                                                                                              >  2:855529‑M2/1‑141 (MQ=255)       aTAGCCTGCCGGGTGGCAAACCGTTCGCCGGCGGACTGGAAATGGCCACCCCGCTGGGGGCAATCCACGCCACCAACATCACCCCCGACCGCGACAGCGGCATCGGTAACTACACCCTGGCCGACTTCGACCGCGCCGTGCgc                                                                                                                                              <  1:855529‑M2/143‑3 (MQ=255)           ccTGCCGGTTGGCAAACTCTTCGTCCGCGGACTGCAAATGGCTTCCCCGCTCGCGGCAATGCACGCCACCAACATCACCCCCGACCGCGACAGCTGCATCGGTTACTCCACCCTGGCCGACTTCGACCGCGCCTTGCGCCAGGGTGTcgc                                                                                                                                   <  2:66476/150‑1 (MQ=255)                  ggTGGCAAACCGTTCGCCGGCGGACTGGAAATGGCCACCCCGCTGGGGGCAATCCACGCCACCAACATCACCCCCGACCGCGACAGCGGCATCGGTAACTACACCCTGGCCGACTTCGACCGCGCCGTGCGCCAGGGTGTCGCGCCGGGt                                                                                                                            <  2:708532/150‑1 (MQ=255)                    tGGCAAACCGTTCGCCGGCGGACTGGAAATGGCCACCCCGCTGGGGGCAATCCACGCCACCAACATCACCCCCGACCGCGACAGCGGCATCGGTAACTACACCCTGGCCGACTTCGACCGCGCCGTGCGCCAGGGTGTCGCGCCGGGTgg                                                                                                                          <  1:1037280/150‑1 (MQ=255)                    tGGCAAACCGTTCGCCGGCGGACTGGAAATGGCCACCCCGCTGGGGGCAATCCACGCCACCAACATCACCCCCGACCGCGACAGCGGCATCGGTAACTACACCCTGGCCGACTTCGACCGCGCCGTGCGCCAGGGTGTCGCGCCGGGTgg                                                                                                                          >  1:1097027/1‑150 (MQ=255)                        aaaCCGTTCGCCGGCGGACTGGAAATGGCCACCCCGCTGGGGGCAATCCACGCCACCAACATCACCCCCGACCGCGACAGCGGCATCGGTAACTACACCCTGGCCGACTTCGACCGCGCCGTGCGCCAGGGTGTCGCGCCGGGtacagcc                                                                                                                      >  2:1019844/1‑144 (MQ=255)                        aaaCCGTTCGCCGGCGGACTGGAAATGGCCACCCCGCTGGGGGCAATCCACGCCACCAACATCACCCCCGACCGCGACAGCGGCATCGGTAACTACACCCTGGCCGACTTCGACCGCGCCGTGCGCCAGGGTGTCGCGCCGGGtacagcc                                                                                                                      >  2:1019811/1‑144 (MQ=255)                           ccGTTCGCCGCCGCACTGGCAATGCCCACCCCTCTTGGGGTAATCCACACCACCAATATCACCCCCGACCGTGACAGCGGCATCGGTATCTACACCCTGGCCGACTTCGACCGCGCCGTGCGCCAGGGTGTCGCGCCGGGTGGCCGACgg                                                                                                                   <  2:563176/150‑1 (MQ=255)                             gTTCGCCGGCGGACTGGAAATGGCCACCCCGCTGGGGGCAATCCACGCCACCAACATCACCCCCGACCGCGACAGCGGCATCGGTAACTACACCCTGGCCGACTTCGACCGCGCCGTGCGCCAGGGTGTCGCGCCGGGTGGCCGACGGCt                                                                                                                 <  1:416902/150‑1 (MQ=255)                                           tGGAAATGGCCACCCCGCTGGGGGCAATCCACGCCACCAACATCACCCCCGACCGCGACAGCGGCATCGGTAACTACACCCTGGCCGACTTCGACCGCGCCGTGCGCCAGGGTGTCGCGCCGGGTGGCCGACGGCTGTACCCGGCGATGc                                                                                                   <  2:1097027/150‑1 (MQ=255)                                             gAAATGGCCACCCCGCTGGGGGCAATCCACGCCACCAACATCACCCCCGACCGCGACAGCGGCATCGGTAACTACACCCTGGCCGACTTCGACCGCGCCGTGCgcca                                                                                                                                            >  2:198213‑M2/1‑103 (MQ=255)                                             gAAATGGCCACCCCGCTGGGGGCAATCCACGCCACCAACATCACCCCCGACCGCGACAGCGGCATCGGTAACTACACCCTGGCCGACTTCGACCGCGCCGTGCgcca                                                                                                                                            <  1:198213‑M2/107‑5 (MQ=255)                                             gAAATGGCCACCCCGCTGGGGGCAATCCACGCCACCAACATCACCCCCGACCGCGACAGCGGCATCGGTAACTACACCCTGGCCGACTTCGACCGCGCCGTGCGCCAGGGTGTCGCGCCGGGTGGCCGACGGCTGTACCCGGCGATGc                                                                                                   >  1:911968/1‑148 (MQ=255)                                             gAAATGGCCACCCCGCTGGGGGCAATCCACGCCACCAACATCACCCCCGACCGCGACAGCGGCATCGGTAACTACACCCTGGCCGACTTCGACCGCGCCGTGCGCCAGGGTGTCGCGCCGGGTGGCCGACGGCTGTACCCGGCGATGc                                                                                                   <  2:911968/148‑1 (MQ=255)                                                aTGGCCACCCCGCTGGGGGCAATCCACGCCACCAACATCACCCCCGACCGCGACAGCGGCATCGGTAACTACACCCTGGCCGACTTCGACCGCGCCGTGCGCCAGGGTGTCGCGCCGGGTGGCCGACGGCTGTACCCGGCGATGCCTTAc                                                                                              >  2:215095/1‑150 (MQ=255)                                                    ccACCCCGCTGGGGGCAATCCACGCCACCAACATCACCCCCGACCGCGACAGCGGCATCGGTAACTACACCCTGGCCGACTTCGACCGCGCCGTGCGCCAGGGTGTCGCGCCGGGTGGc                                                                                                                         <  1:957208/119‑1 (MQ=255)                                                    ccACCCCGCTGGGGGCAATCCACGCCACCAACATCACCCCCGACCGCGACAGCGGCATCGGTAACTACACCCTGGCCGACTTCGACCGCGCCGTGCGCCAGGGTGTCGCGCCGGGTGGc                                                                                                                         >  2:957208/1‑119 (MQ=255)                                                     cACCCCGCTGGGGGCAATCCACGCCACCAACATCACCCCCGACCGCGACAGCGGCATCGGTAACTACACCCTGGCCGACTTCGACCGCGCCGTGCGCCAGGGTGTCGCGCCGGGTGGCCGACGGCTGTACCCGGCGATGCCTTACCCGTc                                                                                         >  1:288254/1‑150 (MQ=255)                                                     cACCCCGCTGGGGGCAATCCACGCCACCAACATCACCCCCGACCGCGACAGCGGCATCGGTAACTACACCCTGGCCGACTTCGACCGCGCCGTGCGCCAGGGTGTCGCGCCGGGTGGCCGACGGCTGTACCCGGCGATGCCTTACCCGTc                                                                                         >  2:116294/1‑150 (MQ=255)                                                      cccccGCTGGGGGCAATCCACGCCACCAACATCACCCCCGACCGCGACAGCGGCATCGGTAACTACACCCTGGCCGACTAGGACCGCGCCGTGCGCCAGGGTGTCGCGCCGGGTGGCCGACGGCTGTACCCGGCGATGCCTTACCCGTcc                                                                                        <  1:990014/149‑1 (MQ=255)                                                      aCCCCGCTGGGGGCAATCCACGCCACCAACATCACCCCCGACCGCGACAGCGGCATCGGTAACTACACCCTGGCCGACTTCGACCGCGCCGTGCGCCAGGGTGTCGCGCCGGGTGGCCGACGGCTGTACCCGGCGATGCCTTACCCGTcc                                                                                        >  1:947470/1‑150 (MQ=255)                                                            cTGGGGGCAATCCACGCCACCAACATCACCCCCGACCGCGACAGCGGCATCGGTAACTACACCCTGGCCGACTTCGACCGCGCCGTGCGCCAGGGTGTCGCGCCGGGTGGCCGACGGCTGTACCCGGCGATGCCTTACCCGTCCTACGcc                                                                                  >  1:798703/1‑150 (MQ=255)                                                                     aTCCACGCCACCAACATCACCCCCGACCGCGACAGCGGCATCGGTAACTACACCCTGGCCGACTTCGACCGCGCCGTGCGCCAGGGTGTCGCGCCGGGTGGCCGACGGCTGTACCCGGCGATGCCTTACCCGTCCTACGCCAAGCTCAGc                                                                         <  2:798703/150‑1 (MQ=255)                                                                      tCCACGCCACCAACATCACCCCCGACCGCGACAGCGGCATCGGTAACTACACCCTGGCCGACTTCGACCGCGCCGTGCGCCAGGGTGTCGCGCCGGGTGGCCGACGGCTGTACCCGGCGATGCCTTACCCGTCCTACGCCAAGCTCAGCg                                                                        >  1:456144/1‑150 (MQ=255)                                                                      tCCACGCCACCAACATCACCCCCGACCGCGACAGCGGCATCGGTAACTACACCCTGGCCGACTTCGACCGCGCCGTGCGCCAGGGTGTCGCGCCGGGTGGCCGACGGCTGTACCCGGCGATGCCTTACCCGTCCTACGCCAAGCTCAGCg                                                                        >  2:1102863/1‑150 (MQ=255)                                                                        cACGCCACCAACATCACCCCCGACCGCGACAGCGGCATCGGTAACTACACCCTGGCCGACTTCGACCGCGCCGTGCGCCAGGGTGTCGCGCCGGGTGGCCGACGGCTGTACCCGGCGATGCCTTACCCGTCCTACGCCAAGCTCAGCgat                                                                      <  2:514900/150‑1 (MQ=255)                                                                         aCGCCACCAACATCACCCCCGACCGCGACAGCGGCATCGGTAACTACACCCTGGCCGACTTCGACCGCGCCGTGCGCCAGGGTGTCGCGCCGGGTGGCCGACGGCTGTACCCGGCGATGc                                                                                                   <  2:476490/120‑1 (MQ=255)                                                                         aCGCCACCAACATCACCCCCGACCGCGACAGCGGCATCGGTAACTACACCCTGGCCGACTTCGACCGCGCCGTGCGCCAGGGTGTCGCGCCGGGTGGCCGACGGCTGTACCCGGCGATGc                                                                                                   >  1:476490/1‑120 (MQ=255)                                                                           gCCACCAACATCACCCCCGACCGCGACAGCGGCATCGGTAACTACACCCTGGCCGACTTCGACCGCGCCGTGTGCCAGGGTGTCGCGCCGGGTGGCCGACGGCTGTACCCGGCGATGCCTTACCCGTCCTACGCCAAGCTCAGCgatgat                                                                   <  2:98896/150‑1 (MQ=255)                                                                            ccaccaACATCACCCCCGACCGCGACAGCGGCATCGGTAACTACACCCTGGCCGACTTCGACCGCGCCGTGCGCCAGTGTGTCGCGCCGGGTGGCCGACGGCTGTACCCGGCGATGCCTTACCCGTCCTACGCCAAGCTCAGCgatgatg                                                                  <  2:947470/150‑1 (MQ=255)                                                                              accaACATCACCCCCGACCGCGACAGCGGCATCGGTAACTACACCCTGGCCGACTTCGACCGCGCCGTGCTCCAGGGTGTCGCGCCGGGTGGCCGACGGCTGTACCCGGCGATGCCTTACCCGTCCTACGCCAAGCTCAGCgatgatgat                                                                <  1:624628/150‑1 (MQ=255)                                                                              accaACATCACCCCCGACCGCGACAGCGGCATCGGTAACTACACCCTGGCCGACTTCGACCGCGCCGTGCGCCAGGGTGTCGCGCCGGGTCGCCGACGGCTGTACCCGGCGATGCCTTCCCCGTCCTACGCCAAGCTCAGCgatgatgat                                                                <  2:268687/150‑1 (MQ=255)                                                                                   cATCACCCCCGACCGCGACAGCGGCATCGGTAACTACACCCTGGCCGACTTCGACCGCGCCGTGCGCCAGGGTGTCGCGCCGGGTgg                                                                                                                          <  2:43554/87‑1 (MQ=255)                                                                                   cATCACCCCCGACCGCGACAGCGGCATCGGTAACTACACCCTGGCCGACTTCGACCGCGCCGTGCGCCAGGGTGTCGCGCCGGGTgg                                                                                                                          >  1:43554/1‑87 (MQ=255)                                                                                         ccccGACCGCGACAGCGGCATCGGTAACTACACCCTGGCCGACTTCGACCGCGCCGTGCGCCAGGGTGTCGCGCCGGGTGGCCGACGGCTGTACCCGGCGATGCCTTACCCGTCCTACGCCAAGCTCAGCgatgatgat                                                                >  2:30263/1‑139 (MQ=255)                                                                                         ccccGACCGCGACAGCGGCATCGGTAACTACACCCTGGCCGACTTCGACCGCGCCGTGCGCCAGGGTGTCGCGCCGGGTGGCCGACGGCTGTACCCGGCGATGCCTTACCCGTCCTACGCCAAGCTCAGCgatgatgat                                                                <  1:30263/139‑1 (MQ=255)                                                                                              aCCGCGACAGCGGCATCGGTAACTACACCCTGGCCGACTTCGACCGCGCCGTGCGCCAGGGTGTCGCGCCGGGTGGCCGa                                                                                                                      >  2:253302/1‑80 (MQ=255)                                                                                              aCCGCGACAGCGGCATCGGTAACTACACCCTGGCCGACTTCGACCGCGCCGTGCGCCAGGGTGTCGCGCCGGGTGGCCGa                                                                                                                      <  1:253302/80‑1 (MQ=255)                                                                                                 gcgACAGCGGCATCGGTAACTACACCCTGGCCGACTTCGACCGCGCCGTGCGCCAGGGTGTCGCGCCGGGTGGCCGACGGCTGTACCCGGCGATGCCTTACCCGTCCTACGCCAAGCTCAGCGATGATGATGTCAAGGCGCTGTATGCGt                                             <  2:146494/150‑1 (MQ=255)                                                                                                     cAGCGGCATCGGTAACTACACCCTGGCCGACTTCGACCGCGCCGTGCGCCAGGGTGTCGCGCCGGGTGGCCGAc                                                                                                                     >  2:139539/1‑74 (MQ=255)                                                                                                     cAGCGGCATCGGTAACTACACCCTGGCCGACTTCGACCGCGCCGTGCGCCAGGGTGTCGCGCCGGGTGGCCGAc                                                                                                                     <  1:139539/74‑1 (MQ=255)                                                                                                       gCGGCATCGGTAACTACACCCTGGCCGACTTCGACCGCGCCGTGCGCCAGGGTGTCGCGCCGGGTGGCCGACGGCTGTACCCGGCGATGCCTTACCCGTCCTACGCCAAGCTCAGCGATGGTGATGTCAATACCCTGGATTCGGTCTTCa                                       <  2:866433/150‑1 (MQ=255)                                                                                                                 tacctgcacGCTGGTGGACTTCGACCTCGCGGTGCGCCAGGGTGTCGCGCCGGGTGGCCGACGTCTGTAGCCGTCGATGCCTTACACGTCCTACGCCAAGCTCAGCTATGATGATGTCAAGGCGCTGTATGCGTTCTTCATGCACGGCGt                             <  2:66863/144‑1 (MQ=255)                                                                                                                     tACACCCTGGCCGACTTCGACCGCGCCGTGCgccagggtgtagttaccgatgccgctgtcgcggtcgggggtgatgttggtggcgtggattgcccccagcggggtggccatttccagtccgccggcgaacggttt                                        >  1:983401‑M2/1‑31 (MQ=255)                                                                                                                     tACACCCTGGCCGACTTCGACCGCGCCGTGCgccagggtgtagttaccgatgccgctgtcgcggtcgggggtgatgttggtggcgtggattgcccccagcggggtggccatttccagtccgccggcgaacggttt                                        <  2:983401‑M2/135‑105 (MQ=255)                                                                                                                        acCCTGGCCGACTTCGACCGCGCCGTGCgccagggtgtagttaccgatgccgctgtcgcggtcgggggtgatgttggtggcgtggattgcccccagcggggtggccatttccagtccgccggcgaacggtttg                                       >  1:148364‑M2/1‑28 (MQ=255)                                                                                                                        acCCTGGCCGACTTCGACCGCGCCGTGCgccagggtgtagttaccgatgccgctgtcgcggtcgggggtgatgttggtggcgtggattgcccccagcggggtggccatttccagtccgccggcgaacggtttg                                       <  2:148364‑M2/133‑106 (MQ=255)                                                                                                                          ccTGGCCGACTTCGACCGCGCCGTGCGCCAGGGTGTCGCGCCGGGTGGCCGACGGCTGTACCCGGCGATGCCTTACCCGTCCTACGCCAAGCTCAGCgatgatgat                                                                >  1:888227/1‑106 (MQ=255)                                                                                                                          ccTGGCCGACTTCGACCGCGCCGTGCGCCAGGGTGTCGCGCCGGGTGGCCGACGGCTGTACCCGGCGATGCCTTACCCGTCCTACGCCAAGCTCAGCgatgatgat                                                                <  2:888227/106‑1 (MQ=255)                                                                                                                              gCCGACTTCGACCGCGCCGTGCGCCAGGGTGTCGCGCCGGGTGGCCGACGGCTGTACCCGGCGATGCCTTACCCGTCCTACGCCAAGCTCAGCGATGATGATGTCAAGGCGCTGTATGCGTTCTTCATGCACGGCGTGCAACCGGCGCgg                >  1:109146/1‑150 (MQ=255)                                                                                                                                  aCTTCGACCGCGCCGTGCGCCAGGGTGTCGCGCCGGGTGGCCGACGGCTGTACCCGGCGATGCCTTACCCGTCCTACGCCAAGCTCAGCGATGATGATGTCAAGGCGCTGTATGCGTTCTTCATGCACGGCGTGCAACCGGCGCGGCAgg            <  2:456144/150‑1 (MQ=255)                                                                                                                                            cgcCGGGCGCCAGGGTGTCGCGCCGGGTGGCCGACGGCTGTACCCGGCGATGCCTTACCCGTCCTACGCCAAGCTCAGCGATGATGATGTCAAGGCGCTGTATGCGTTCTTCATGCACGGCGTGCAACCGGCGCGGCAGGCCAACCTggg  <  2:384428/150‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                               CCTGCCATAGCCTGCCGGGTGGCAAACCGTTCGCCGGCGGACTGGAAATGGCCACCCCGCTGGGGGCAATCCACGCCACCAACATCACCCCCGACCGCGACAGCGGCATCGGTAACTACACCCTGGCCGACTTCGACCGCGCCGTGCGCCAGGGTGTCGCGCCGGGTGGCCGACGGCTGTACCCGGCGATGCCTTACCCGTCCTACGCCAAGCTCAGCGATGATGATGTCAAGGCGCTGTATGCGTTCTTCATGCACGGCGTGCAACCGGCGCGGCAGGCCAACCTGGG  >  NC_002947/4119813‑4120101

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.