New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4284658 =	42 (0.930)	4 (0.090)	4/240	NT	8.8%	coding (19/849 nt)	hbd	3‑hydroxybutyryl‑CoA dehydrogenase
	?	NC_002947	4284718 =	42 (0.960)					coding (79/849 nt)	hbd	3‑hydroxybutyryl‑CoA dehydrogenase

CCACGATGTGTATCGGCGGTGGCCAAGGCATCGCCGTCGTGTTCGAGCGCGTCTGAGGGAGGCTGACACATGAGCATTGAAAAGATCGCCGTGATCGGCGCGGGCACCATGGGCAACGGCATTGCCCAGGTGTGCGCCATTGCCGGCTACCAGGTGCTGCTGGTGGATGTTTCCGACGCAGCGCTCGAGCGCGGTGTGGCCACCTTGAGCAAGAACCTCGAGCGCCAGGTCAGCAAGGGCACTCTCGACGCCGACAAGGCCGCAGCCGCCAAAGCCCGCATCCGTACCAGCACCGAC  >  NC_002947/4284571‑4284867                                                                                                                                                    |                                                                                                                                                      ccACGATGTGTATCGGCGGTGGCCAAGGCATCGCCGTCGTGTTCGAGCGCGTCTGAGGGAGGCTGACACATGAGCATTGAAAAGATCGCCGTGATCGGCGCGGGCACCATGGGCAACGGCATTGCCCAGGTGTGCGCCATTGCCGGCTAc                                                                                                                                                     >  1:1128285/1‑150 (MQ=255)   tgacctggcgctcgaggttcttgctcaaggtggccacaccgcgctcgagcgctgcgtcggaaacatccaccagcagcacctggtaGCCGTGATCGGCGCGGGCACCATGGGCAACGGCATTGCCCAGGTGTGCGCCATTGCCGGCTACCa                                                                                                                                                   >  2:626617‑M1/86‑150 (MQ=255)      aTGTGTATCGGCGGTGGCCAAGGCATCGCCGTCGTGTTCGAGCGCGTCTGAGGGAGGCTGACACATGAGCATTGAAAAGATCGCCGTGATCGGCGCGGGCACCATGGGCAACGGCATTGCCCAGGTGTGAGCCATTGCCGGCTACCAGGt                                                                                                                                                <  2:685236/150‑1 (MQ=255)        gtgtATCGGCGGTGGCCAAGGCATCGCCGTCGTGTTCGAGCGCGTCTGAGGGAGGCTGACACATGAGCATTGAAAAGATCGCCGTGATCGGCGCGGGCACCATGGGCAACGGCATTGCCCAGGTGTGCGCCATTGCCGGCTACCAGGtgc                                                                                                                                              >  2:905306/1‑150 (MQ=255)        gtgtATCGGCGGTGGCCAAGGCATCGCCGTCGTGTTCGAGCGCGTCTGAGGGAGGCTGACACATGAGCATTGAAAAGATCGCCGTGATCGGCGCGGGCACCATGGGCAACGGCATTGCCCAGGTGTGCGCCATTGCCGGCTACCAGGtgc                                                                                                                                              >  1:361510/1‑150 (MQ=255)           tATCGGCGGTGGCCAAGGCATCGCCGTCGTGTTCGAGCGCGTCTGAGGGAGGCTGACACATGAGCATTGAAAAGATCGCCGTGATCGGCGCGGGCACCATGGGCAACGGCATTGCCCAGGTGTGCGCCATTGCCGGCTACCAGGtgctgc                                                                                                                                           <  1:156008/150‑1 (MQ=255)              cggcggTGGCCAAGGCATCGCCGTCGTGTTCGAGCGCGTCTGAGGGAGGCTGACACATGAGCATTGAAAAGATCGCCGTGATCGGCGCGGGCACCATGGGCAACGGCATTGCCCAGGTGTGCGCCATTGCCGGCTACCAGGTGCTGCtgg                                                                                                                                        <  2:492275/150‑1 (MQ=255)               ggcggTGGCCAAGGCATCGCCGTCGTGTTCGAGCGCGTCTGAGGGAGGCTGACACATGAGCATTGAAAAGATCGCCGTGATCGGCGCGGGCACCATGGGCAACGGCATTGCCCAGGTGTGCGCCATTGCCGGCTACCAGGTGCTGCtggt                                                                                                                                       <  2:175867/150‑1 (MQ=255)               cgaggttcttgctcaaggtggccacaccgcgctcgagcgctgcgtcggaaacatccaccagcagcacctggtaGCCGTGATCGGCGCGGGCACCATGGGCAACGGCATTGCCCAGGTGTGCGCCATTGCCGGCTACCAGGTGCTGCtggt                                                                                                                                       >  2:765854‑M1/74‑150 (MQ=255)                      gCCAAGGCATCGCCGTCGTGTTCGAGCGCGTCTGAGGGAGGCTGACACATGAGCATTGAAAAGATCGCCGTGATCGGCGCGGGCACCATGGGCAACGGCATTGCCCAGGTGTGCGCCATTGCCGGCTACCAGGTGCTGCTGGTGGATGtt                                                                                                                                >  1:87959/1‑150 (MQ=255)                         aaGGCATCGCCGTCGTGTTCGAGCGCGTCTGAGCGAGGCTGACACATGAGCATTGAAAAGATCGCCGTGATCGGCGCGGGCACCATGGGCAACGGCATTGCCCAGGTGTGCGCCATTGCCGGCTACCAGGTGCTGCGGGTGGATGTTTcc                                                                                                                             <  2:566647/150‑1 (MQ=255)                               tCGCCGTCGTGTTCGAGCGCGTCTGAGGGAGGCTGACACATGAGCATTGAAAAGATCGCCGTGATCGGCGCGGGCACCATGGGCAACGGCATTGCCCAGGTGTGCGCCATTGCCGGCTACCCGGCCTTGCTGGTGGATGTTTCCGACGCa                                                                                                                       <  1:1068841/150‑1 (MQ=255)                               ccGCCGTCGTGTTCGAGCGCGTCTGAGGGAGGCTGACACATGAGCATTGAAAAGATCGCCGTGATCGGCGCGGGCACCATGGGCAACGGCATTGCCCAGGTGTGCGCCATTGCCGGCTACCAGGTGCTGCTGGTGGATGTTTCCGACGCa                                                                                                                       <  2:902085/149‑1 (MQ=255)                                           tCGAGCGCGTCTGAGGGAGGCTGACACATGAGCATTGAAAAGATCGCCGTGATCGGCGCGGGCACCATGGGCAACGGCATTGCCCAGGTGTGCGCCATTGCCGGCTACCAGGTGCTGCTGGTGGATGTTTCCGACGCAGCGCTCGAgcgc                                                                                                           <  1:692481/150‑1 (MQ=255)                                            cGAGCGCGTCTGAGGGAGGCTGACACATGAGCATTGAAAAGATCGCCGTGATCGGCGCGGGCACCATGGGCAACGGCATTGCCCAGGTGTGCGCCATTGCCGGCTACCAGGTGCTGCTGGTGGATGTTTCCGACGCAGCGCTCGAGcgcg                                                                                                          <  1:507495/150‑1 (MQ=255)                                              aGCGCGTCTGAGGGAGGCTGACACATGAGCATTGAAAAGATCGCCGTGATCGGCGCGGGCACCATGGGCAACGGCATTGCCCAGGTGTGCGCCATTGCCGGCTACCAGGTGCTGCTGGTGGATGTTTCCGACGCAGCGCTCGAGCGCGgt                                                                                                        >  2:1139651/1‑150 (MQ=255)                                              aGCGCGTCTGAGGGAGGCCGACACATGAGCATTGAAAAGATCGCCGTGATCGGCGCGGGCACCATGGGCAACGGCATTGCCCAGGTGTGCGCCATTGCCGGCTACCAGGTGCTGCTGGTGGATGTTTCCGGCGCAGCGCTCGAGCGCGgt                                                                                                        <  2:70927/150‑1 (MQ=255)                                                 gcgTCTGAGGGAGGCTGACACATGAGCATTGAAAAGATCGCCGTGATCGGCGCGGGCACCATGGGCAACGGCATTGCCCAGGTGTGCGCCATTGCCGGCTACCAGGTGCTGCTGGTGGATGTTTCCGACGCAGCGCTCGAGCGCGGtgtg                                                                                                     <  2:957357/150‑1 (MQ=255)                                                 gcgTCTGAGGGAGGCTGACACATGAGCATTGAAAAGATCGCCGTGATCGGCGCGGGCACCATGGGCAACGGCATTGCCCAGGTGTGCGCCATTGCCGGCTACCAGGTGCTGCTGGTGGATGTTTCCGACGCAGCGCTCGAGCGCGGtgtg                                                                                                     <  2:312751/150‑1 (MQ=255)                                                   gTCTGAGGGAGGCTGACACATGAGCATTGAAAAGATCGCCGTGATCGGCGCGGGCACCATGGGCAACGGCATTGCCCAGGTGTGCGCCATTGCCGGCTACCAGGTGCTGCTGGTGGATGTTTCCGACGCAGCGCTCGAGCGCGGTGTGGc                                                                                                   >  2:164665/1‑150 (MQ=255)                                                           gaggCTGACACATGAGCATTGAAAAGATCGCCGTGATCGGCGCGGGCACCATGGGCAACGGCATTGCCCAGGTGTGCGCCATTGCCGGCTACCAGGTGCTGCTGGTGGATGTTTCCGACGCAGCGCTCGAGCGCGGTGTGGCCACCTTGa                                                                                           <  1:455531/150‑1 (MQ=255)                                                           gaggCTGACACATGAGCATTGAAAAGATCGCCGTGATCGGCGCGGGCACCATGGGCAACGGCATTGCCCAGGTGTGCGCCATTGCCGGCTACCAGGTGCTGCTGGTGGATGTTTCCGACGCAGCGCTCGAGCGCGGTGTGGCCACCTTGa                                                                                           <  2:1097947/150‑1 (MQ=255)                                                           gaggCTGACACATGAGCATTGAAAAGATCGCCGTGATCGGCGCGGGCACCATGGGCAACGGCATTGCCCAGGTGTGCGCCATTGCCGGCTACCAGGTGCTGCTGGTGGATGTTTCCGACGCAGCGCTCGAGCGCGGTGTGGCCACCTTGa                                                                                           <  2:1128285/150‑1 (MQ=255)                                                                tGACACATGAGCATTGAAAAGATCGCCGTGATCGGCGCGGGCACCATGGGCAACGGCATTGCCCAGGTGTGCGCCATTGCCGGCTACCAGGTGCTGCTGGTGGATGTTTCCGACGCAGCGCTCGAGCGCGGTGTGGCCACCTTGAGCAAg                                                                                      >  2:478813/1‑150 (MQ=255)                                                                  acacATGAGCATTGAAAAGATCGCCGTGATCGGCGCGGGCACCATGGGCCACGGCATTGCCCAGGTGTGCGCCATTGCCGGCTACCAGGTGCTGCTGGTGGATGTTTCCGACGCAGCGCTCGAGCGCGGTGTGGCCACCTTGAGCAAGaa                                                                                    >  1:30090/1‑150 (MQ=255)                                                                      aTGAGCATTGAAAAGATCGCCGTGATCGGCGCGGGCATCATGGGCAACGGCATTGCCCAGGTGTGCGCCATTGCCGGCTACCAGGTGCTGCTGGTGGATGTTTCCGACGCAGCGCTCGAGCGCGGTGTGGCCACCTTGAGCAAGAACCTc                                                                                <  2:653543/150‑1 (MQ=255)                                                                       accagcagcacctggtagccggcaatggcgcacacctgggcaatgccgttgcccatggtgcccgcgccgatcacggcTACCAGGTGCTGCTGGTGGATGTTTCCGACGCAGCGCTCGAGCGCGGTGTGGCCACCTTGAGCAAGAACCTCg                                                                               >  2:765854‑M2/78‑150 (MQ=255)                                                                          gCATTGAAAAGATCGCCGTGATCGGCGCGGGCACCATGGGCAACGGCATTGCCCAGGTGTGCGCCATTGCCGGCTACCAGGTGCTGCTGGTGGATGTTTCCGACGCAGCGCt                                                                                                                  <  1:490172/112‑1 (MQ=255)                                                                          gCATTGAAAAGATCGCCGTGATCGGCGCGGGCACCATGGGCAACGGCATTGCCCAGGTGTGCGCCATTGCCGGCTACCAGGTGCTGCTGGTGGATGTTTCCGACGCAGCGCt                                                                                                                  >  2:490172/1‑112 (MQ=255)                                                                          gCATTGAAAAGATCGCCGTGATCGGCGCGGGCACCATGGGCAACGGCATTGCCCAGGTGTGCGCCATTGCCGGCTACCAGGTGCTGCTGGTGGATGTTTCCGACGCAGCGCTCGAGCGCGGTGTGGCCACCTTGAGCAAGAACCTCGAgc                                                                            <  2:361510/150‑1 (MQ=255)                                                                            aTTGAAAAGATCGCCGTGATCGGCGCGGGCACCATGGGCAACGGCATTGCCCAGGTGTGCGCCATTGCCGGCTACCAGGTGCTGCTGGTGGATGTTTCCGACGCAGCGCTCGAGCGCGGTGTGGCCACCTTGAGCAAGAACCTCGAgcgc                                                                          >  1:502283/1‑150 (MQ=255)                                                                                aaaaGATCGCCGTGATCGGCGCGGGCACCATGGGCAACGGCATTGCCCAGGTGTGCGCCATTGCCGGCTACCAGGTGCTGCTGGTGGATGTTTCCGACGCAGCGCTCGAGCGCGGTGTGGCCACCTTGAGCAAGAACCTCGAGCGCCAgg                                                                      >  1:344972/1‑150 (MQ=255)                                                                                   tggtagccggcaatggcgcacacctgggcaatgccgttgcccatggtgcccgcgccgatcacggcTACCAGGTGCTGCTGGTGGATGTTTCCGACGCAGCGCTCGAGCGCGGTGTGGCCACCTTGAGCAAGAACCTCGAGCGCCAGGTCa                                                                   >  2:626617‑M2/66‑150 (MQ=255)                                                                                     aTCGCCGTGATCGGCGCGGGCACCATGGGCAACGGCATTGCCCAGGTGTGCGCCATTGCCGGCTACCAGGTGCTGCTGGTGGATGTTTCCGACGCAGCGCTCGAGCGCGGTGTGGCCACCTTGAGCAAGAACCTCGAGCGCCAGGTCAGc                                                                 <  2:726370/150‑1 (MQ=255)                                                                                         CCGTGATCGGCGCGGGCACCATGGGCAACGGCATTGCCCAGGTGTGCGCCATTGCCGGCTACCAGGTGCTGCTGGTGGATGTTTCCGACGCAGCGCTCGAGCGCGGTGTGGCCACCTTGAGCAAGAACCTCGAGCGCCAGGTCAGCAAgg                                                             >  1:727255‑M1/1‑150 (MQ=255)                                                                                          cggcaatggcgcacacctgggcaatgccgttgcccatggtgcccgcgccgatcacggcTACCAGGTGCTGCTGGTGGCTGTTTCCGACGCAGCGCTCGATCTCGTTGTTGCCACCTTGAGCAAGAACCTCGAGCGCCAGGTCAGCAAggg                                                            <  1:626617‑M2/92‑1 (MQ=255)                                                                                          CGTGATCGGCGCGGGCACCATGGGCAACGGCATTGCCCAGGTGTGCGCCATTGCCGGCTACCAGGTGCTGCTGGTGGATGTTTCCGACGCAGCGCTc                                                                                                                 >  1:41196‑M1/1‑97 (MQ=255)                                                                                          CGTGATCGGCGCGGGCACCATGGGCAACGGCATTGCCCAGGTGTGCGCCATTGCCGGCTACCAGGTGCTGCTGGTGGATGTTTCCGACGCAGCGCTc                                                                                                                 <  2:41196‑M1/97‑1 (MQ=255)                                                                                          CGTGATCGGCGCGGGCACCATGGGCAACGGCATTGCCCAGGTGTGCGCCATTGCCGGCTACCAGGTGCTGCTGGTGGATGTTTCCGACGCAGCGCTCGAGCGCGGTGTGGCCACCTTGAGCAAGAACCTCGAGCGCCAGGTCAGCAAggg                                                            >  1:164665‑M1/1‑150 (MQ=255)                                                                                           ggcaatggcgcacacctgggcaatgccgttgcccatggtgcccgcgccgatcacggcTACCAGGTGCTGCTGGTGGATGTTTCCGACGCAGCGCTCGAGCGCGGTGTGGCCACCTTGAGCAAGAACCTCGAGCGCCAGGTCAGCAAGGGc                                                           <  1:765854‑M2/93‑1 (MQ=255)                                                                                            tGATCGGCGCGGGCACCATGGGCAACGGCATTGCCCAGGTGTGCGCCATTGCCGGCTACCAGGTGCTGCTGGTGGATGTTTCCGACGCAGCGCTCGAGCGCGGTGTGGCCACCTTGAGCAAGAACCTCGAGCGCCAGGTCAGCAAGGGCa                                                          >  2:289019/1‑150 (MQ=255)                                                                                                 ggCGCGGGCACCATGGGCAACGGCATTGCCCAGGTGTGCGCCATTGCCGGCTACCAGGTGCTGCTGGTGGATGTTTCCGACGCAGCGCTCGAGCGCGGTGTGGCCACCTTGAGCAAGAACCTCGAGCGCCAGGTCAGCAAGGGCACtctc                                                     <  2:344972/150‑1 (MQ=255)                                                                                                                  cAACGGCATTGCCCAGGTGTGCGCCATTGCCGGCTACCAGGTGCTGCTGGTGGATGTTTCCGACGCAGCGCTCGAGCGCGGTGTGGc                                                                                                   >  2:914279/1‑87 (MQ=255)                                                                                                                  cAACGGCATTGCCCAGGTGTGCGCCATTGCCGGCTACCAGGTGCTGCTGGTGGATGTTTCCGACGCAGCGCTCGAGCGCGGTGTGGc                                                                                                   <  1:914279/87‑1 (MQ=255)                                                                                                                   aaCGGCATTGCCCAGGTGTGCGCCATTGCCGGCTACCAGGTGCTGCTGGTGGATGTTTCCGACGCAGCGCTCGAGCGCGGTGTGGCCACCTTGAGCAAGAACCTCGAGCGCCAGGTCAGCAAGGGCACTCTCGACGCCGACAAGGCCGCa                                   <  1:905306/150‑1 (MQ=255)                                                                                                                     cGGCATTGCCCAGGTGTGCGCCATTGCCGGCTACCAGGTGCTGCTGGTGGATGTTTCCGACGCAGCGCTCGAGCGCGGTGTGGCCACCTTGAGCAAGAACCTCGAGCGCCAGGTCAGCAAggg                                                            <  2:517793/123‑1 (MQ=255)                                                                                                                     cGGCATTGCCCAGGTGTGCGCCATTGCCGGCTACCAGGTGCTGCTGGTGGATGTTTCCGACGCAGCGCTCGAGCGCGGTGTGGCCACCTTGAGCAAGAACCTCGAGCGCCAGGTCAGCAAggg                                                            >  1:517793/1‑123 (MQ=255)                                                                                                                      ggCATTGCCCAGGTGTGCGCCATTGCCGGCTACCAGGTGCTGCTGGTGGATGTTTCCGACGCAGCGCTCGAGCGCGGTGTGGCCACCTTGAGCAAGAACCTCGAGCGCCAGGTCAGCAAGGGCACTCTCGACGCCGACAAGGCCGCAgcc                                <  1:289019/150‑1 (MQ=255)                                                                                                                      ggCATTGCCCAGGTGTGCGCCATTGCCGGCTACCAGGTGCTGCTGGTGGATGTTTCCGACGCAGCGCTCGAGCGCGGTGTGACCACCTTGAGCAAGAACCTc                                                                                <  2:200062/102‑1 (MQ=255)                                                                                                                      ggCATTGCCCAGGTGTGCGCCATTGCCGGCTACCAGGTGCTGCTGGTGGATGTTTCCGACGCAGCGCTCGAGCGCGGTGTGACCACCTTGAGCAAGAACCTc                                                                                >  1:200062/1‑102 (MQ=255)                                                                                                                              ccAGGTGTGCGCCATTGCCGGCTACCAGGTGCTGCTGGTGGATGTTTCCGACGCAGCGCTCGAGCGCGGtgtg                                                                                                     >  2:485032/1‑73 (MQ=255)                                                                                                                              ccAGGTGTGCGCCATTGCCGGCTACCAGGTGCTGCTGGTGGATGTTTCCGACGCAGCGCTCGAGCGCGGtgtg                                                                                                     <  1:485032/73‑1 (MQ=255)                                                                                                                                aGGTGTGCGCCATTGCCGGCTACCAGGTGCTGCTGGTGGATGTTTCCGACGCAGCGCTCGAGCGCGGTGTGGCCACCTTGAGCAAGAACCTCGAGCGCCAGGTCAGCAAGGGCACTCTCGACGCCGACAAGGCCGCAGCCGCCAAAGccc                      <  1:478813/150‑1 (MQ=255)                                                                                                                                            ttGCCGGCTACCAGGTGCTGCTGGTGGATGTTTCCGACGCAGCGCTCGTGCGCGGTGTGGCCACCTTGAGAAAGAACCGCGAGCGCCAGGTCAGCACTGTAAGCCCCGACGCCGACAAGGCCGCAGCCGCCAAAGCCCGCATCCGTACCa          <  1:634157/150‑1 (MQ=255)                                                                                                                                                    tACCAGGTGCTGCTGGTGGATGTTTCCGACGCAGCGCTCGAGCGCGGTGTGGCCACCTTGAGCAAGAACCTCGAGCGCCAGGTCAGCAAGGGCACTCTCGACGCCGACAAGGCCGCAGCCGCCAAAGCCCGCATCCGTACCAGCACCGAc  <  2:281018/150‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                      CCACGATGTGTATCGGCGGTGGCCAAGGCATCGCCGTCGTGTTCGAGCGCGTCTGAGGGAGGCTGACACATGAGCATTGAAAAGATCGCCGTGATCGGCGCGGGCACCATGGGCAACGGCATTGCCCAGGTGTGCGCCATTGCCGGCTACCAGGTGCTGCTGGTGGATGTTTCCGACGCAGCGCTCGAGCGCGGTGTGGCCACCTTGAGCAAGAACCTCGAGCGCCAGGTCAGCAAGGGCACTCTCGACGCCGACAAGGCCGCAGCCGCCAAAGCCCGCATCCGTACCAGCACCGAC  >  NC_002947/4284571‑4284867

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.