New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4586100	11 (0.240)	10 (0.320)	8/172	NT	67.5%	intergenic (+139/+78)	PP_4061/PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
	?	NC_002947	= 4586128	2 (0.060)					intergenic (+167/+50)	PP_4061/PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase

GCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATGC‑GGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTGCACCTTGCCGGTCACGGTCATCGGGTACTC  >  NC_002947/4585980‑4586267                                                                                                                                                      |                                                                                                                                            accggcaaggtgcagaagttccgcatgcgtgagatcagtgtggcggagattgcggctgcatctgcgggttgatgtgctggcgcGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATGC‑GGCGCTGcc                                                                                                                                            >  2:1066934‑M1/84‑150 (MQ=255)     gcaaggtgcagaagttccgcatgcgtgagatcagtgtggcggagattgcggctgcatctgcgggttgatgtgctggcgcGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATGC‑GGCGCTGCCCCTg                                                                                                                                        >  1:468034‑M1/80‑150 (MQ=255)         ggtgcagaagttccgcatgcgtgagatcagtgtggcggagattgcggctgcatctgcgggttgatgtgctggcgcGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATGC‑GGCGCTGCCCCTGGTAg                                                                                                                                    >  1:852906‑M1/76‑150 (MQ=255)         aGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATGC‑GGCGCTGCccctggtag                                                                                                                                    >  1:1184097‑M2/1‑141 (MQ=255)          gtgcagaagttccgcatgcgtgagatcagtgtggcggagattgcggctgcatctgccggttgatgtgctggcgcGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATGC‑GGCGCTGCCCCTGGTAgg                                                                                                                                   >  1:1104019‑M1/75‑150 (MQ=255)           cTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATGC‑GGCGCTGCccctgg                                                                                                                                       <  1:421407‑M2/145‑7 (MQ=255)           cTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATGC‑GGCGCTGCccctgg                                                                                                                                       >  2:421407‑M2/1‑139 (MQ=255)                 tGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATGC‑GGCGCTGCccctggtaggagcgggt                                                                                                                            <  2:557601‑M2/150‑18 (MQ=255)                    tccgcatgcgtgagatcagtgtggcggagattgcggctgcatctgcgggttgatgtgctggcgcGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATGC‑GGCGCTGCCCCTgg                                                                                                                                       >  2:908675‑M1/65‑136 (MQ=255)                    tccgcatgcgtgagatcagtgtggcggagattgcggctgcatctgcgggttgatgtgctggcgcGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATGC‑GGCGCTGCCCCTgg                                                                                                                                       <  1:908675‑M1/72‑1 (MQ=255)                     ctgctCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATGC‑GGCGCTGCccctggtaggagcgggtttac                                                                                                                        >  2:278282‑M2/1‑129 (MQ=255)                       gctCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATGC‑GGCGCTGCccctggtaggagcgggtttaccc                                                                                                                      >  1:557601‑M2/1‑127 (MQ=255)                       gctCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATGC‑GGCGCTGCccctggtaggagcgggtttaccc                                                                                                                      >  2:542609‑M2/1‑127 (MQ=255)                       gcatgcgtgagatcagtgtggcggagattgcggctgcatctgcgggttgatgtgctggcgcGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGCATGC‑GGCGCTGCCCCTGGTAGGAGCGGGt                                                                                                                            <  1:141340‑M1/83‑1 (MQ=255)                                                               gTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATGC‑GGCGCTGCcc                                                                                                                                           <  2:641190‑M2/89‑3 (MQ=255)                                                               gTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATGC‑GGCGCTGCcc                                                                                                                                           >  1:641190‑M2/1‑87 (MQ=255)                                                                       cTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATGC‑GGCGCTGCccctggtaggagcgggtttacccgcgaagaggcc                                                                                                           >  2:563167‑M2/1‑79 (MQ=255)                                                                       cTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATGC‑GGCGCTGCccctggtaggagcgggtttacccgcgaagaggcc                                                                                                           <  1:563167‑M2/113‑35 (MQ=255)                                                                                           CTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATGC‑GGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAAtc                                                                   <  2:999134‑M1/133‑1 (MQ=255)                                                                                           CTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATGC‑GGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAAtc                                                                   >  1:999134‑M1/1‑133 (MQ=255)                                                                                           CTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATGC‑GGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGAtctc                                                  <  1:673716‑M1/150‑1 (MQ=255)                                                                                            tctTCGCGGGTAAACCCGCTCCTCCCATGCACCATGCCCGCCTGGAATGC‑GGCGCTGCCCCTGGGAGGCGCGGGTTTACCCACGACGAGGCCGGCACCGCCAGCACACCATCCCGCATGTGCAGCCACAATCCCCGCCGCCCTGCTCTCa                                                 >  2:1138467/1‑150 (MQ=255)                                                                                                       AAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATGC‑GGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGaa                                      >  2:673716‑M1/1‑150 (MQ=255)                                                                                                         ACCCGCTCCTACCAGGGGCAGCGCCG‑CATTCAAGGCCGGCACGGTCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGc                                          <  2:141340‑M1/144‑1 (MQ=255)                                                                                                           ccGCTCCTACCAGGGACCGTGCCGGCCTTGAATGC‑GGCGCTGCccctggtaggagcgggtttacccgcgaagaggccggcccgatcaatgcaagatcttc                                                                                    <  1:966705‑M2/100‑58 (MQ=255)                                                                                                           ccGCTCCTACCAGGGACCGTGCCGGCCTTGAATGC‑GGCGCTGCccctggtaggagcgggtttacccgcgaagaggccggcccgatcaatgcaagatcttc                                                                                    >  2:966705‑M2/1‑43 (MQ=255)                                                                                                               TCCTACCAGGGACCGTGCCGGCCTTGAATGC‑GGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATc                                                                                          <  2:471780‑M1/90‑1 (MQ=255)                                                                                                               TCCTACCAGGGACCGTGCCGGCCTTGAATGC‑GGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATc                                                                                          >  1:471780‑M1/1‑90 (MQ=255)                                                                                                                  tACCAGGGACCGTGCCGGCCTTGAATGC‑GGCGCTGCccctggtaggagcgggtttacccgcgaagaggccggcccgatcaatgcaagatcttcaccttgccaagcacccggtcatcctcaacctttcaatggagcagcgcagatcagctg                           <  2:306523‑M2/150‑115 (MQ=255)                                                                                                                  tACCAGGGACCGTGCCGGCCTTGAATGC‑GGCGCTGCccctggtaggagcgggtttacccgcgaagaggccggcccgatcaatgcaagatcttcaccttgccaagcacccggtcatcctcaacctttcaatggagcagcgcagatcagctg                           <  1:307302‑M2/150‑115 (MQ=255)                                                                                                                  TACCAGGGACCGTGCCGGCCTTGAATGC‑GGCGCTGCGCAGGGTAGGAGCGGGATTACCCGCGAAGAGGCCGGCCGCGCCAGCACATAAACGCGCAGATGGAGCCGCAATGTCCGGGACACTGATCTCACGCATGGGGAACTTCTGGACCt                           <  2:513883‑M1/150‑1 (MQ=255)                                                                                                                   aCCAGGGACCGTGCCGGCCTTGAATGC‑GGCGCTGCccctggtaggagcgggtttacccgcgaagaggccggcccgatcaatgcaagatcttcaccttgccaagcacccggtcatcctcaacctttcaatggagcagcgcagatcagctgt                          <  1:813043‑M2/150‑116 (MQ=255)                                                                                                                   aCCAGGGACCGTGCCGGCCTTGAATGC‑GGCGCTGCccctggtaggagcgggtttacccgcgaagaggccggcccgatcaatgcaagatcttcaccttgccaagcacccggtcatcctcaacctttcaatggagcagcgcagatcagctgt                          <  1:657475‑M2/150‑116 (MQ=255)                                                                                                                     cAGGGACCGTGCCGGCCTTGAATGC‑GGCGCTGCccctggtaggagcgggtttacccgcgaagaggccggcccgatcaatgcaagatcttcaccttgccaagcacccggtcatcc                                                            >  1:266364‑M2/1‑33 (MQ=255)                                                                                                                     cAGGGACCGTGCCGGCCTTGAATGC‑GGCGCTGCccctggtaggagcgggtttacccgcgaagaggccggcccgatcaatgcaagatcttcaccttgccaagcacccggtcatcc                                                            <  2:266364‑M2/114‑82 (MQ=255)                                                                                                                      aGGGACCGTGCCGGCCTTGAATGC‑GGCGCTGCccctggtaggagcgggtttacccgcgaagaggccggcccgatcaatgcaagatcttcaccttgccaagcacccggtcatcctcaacctttcaatggagcagcgcagatcagctgttca                       <  2:761435‑M2/150‑119 (MQ=255)                                                                                                                      AGGGACCGTGCCGGCCTTGAATGC‑GGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTGCACCTTGcc                       <  2:786596‑M1/150‑1 (MQ=255)                                                                                                                              tGCCGGCCTTGAATGC‑GGCGCTGCccctggtaggagcgggtttacccgcga                                                                                                                  >  1:84851‑M2/1‑24 (MQ=255)                                                                                                                              tGCCGGCCTTGAATGC‑GGCGCTGCccctggtaggagcgggtttacccgcga                                                                                                                  <  2:84851‑M2/51‑28 (MQ=255)                                                                                                                               gCCGGCCTTGAATGC‑GGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTGCACCTTGCcggtcacggt              >  1:545387/1‑150 (MQ=255)                                                                                                                                           tGC‑GGCGCTGCccctggtaggagcgggtttacccgcgaagaggccggcccgatcaatgcaagatcttcaccttgccaagcacccggtcatcctcaacctttcaatggagcagcgcagatcagctgttcacgccggtgccgtggtctaccc  >  2:307302‑M2/1‑11 (MQ=255)                                                                                                                                                      |                                                                                                                                            GCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATGC‑GGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTGCACCTTGCCGGTCACGGTCATCGGGTACTC  >  NC_002947/4585980‑4586267

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.