New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 5175524 =32 (0.710)4 (0.090) 4/234 NT 10.0% coding (279/945 nt) PP_4551 alpha/beta family hydrolase
?NC_002947 5175583 = 42 (0.990)coding (338/945 nt) PP_4551 alpha/beta family hydrolase

GTGGCCACGGGCGCACTGCCGAACTGGGCAACCTCGGCCTGTTCGCCCGCCATCATGGCTGGAATGCCGTGGTCAATGACCTGGGGTGTGTGGCCCAGCACATCGGCCAGCAGTTCCCGTGCACGCCGCTGTTCCTGTTCGGCCACAGCATGGGCAGCTACATCGCCCAGGCGTACCTGCTGCATCACAGTGGCAGCCTGCACGGGGCGATCCTTAGCGGTTCCAACTACCAACCGGCCGTGCTGTACCGCTTTGCGCGGCTGATTGCCCGGCTGGAGTCCTGGCGCCAGGGGCCA  >  NC_002947/5175436‑5175731
                                                                                                                                                   |                                                                                                                                                    
gTGGCCACGGGCGCACTGCCGAACTGGGCAACCTCGGCCTGTTCGCCCGCCATCATGGCTGGAATGCCGTGGTCAATGACCTGGGGTGTGTGGCCCAGCACATCGGCCAGCAGTTCCCGTGCACGCCGCTGTTCCTGTTCGGCCACAGCa                                                                                                                                                    >  1:505909/1‑150 (MQ=255)
    ccACGGGCGCACTGCCGAACTGGGCAACCTCGGCCTGTTCGCCCGCCATCATGGCTGGAATGCCGTGGTCAATGACCTGGGGTGTGTGGCCCAGCACATCGGCCAGCAGTTCCCGTGCACGCCGCTGTTCCTGTTCGGCCACAGCATggg                                                                                                                                                <  2:505909/150‑1 (MQ=255)
                  ctaaggatcgccccgtgcaggctgccactgtgatgcagccggtacgcctgggcgatgtagctgcccatgcTGTGGCCCAGCACATCGGCCAGCAGTTCCCGTGCACGCCGCTGTTCCTGTTCGGCCACAGCATGGGCAGc                                                                                                                                            >  1:1056408‑M1/71‑140 (MQ=255)
                  ctaaggatcgccccgtgcaggctgccactgtgatgcagcaggtacgcctgggcgatgtagctgcccatgcTGTGGCCCAGCACATCGGCCAGCAGTTCCCGTGCACGCCGCTGTTCCTGTTCGGCCACAGCATGGGCAGc                                                                                                                                            <  2:1056408‑M1/70‑1 (MQ=255)
                     aaCTGGGCAACCTCGGCCTGTTCGCCCGCCATCATGGCTGGAATGCCGTGGTCAATGACCTGGGGTGTGTGGCCCAGCACATCGGCCAGCAGTTCCCGTGCACGCCGCTGTTCCTGTTCGGCCACAGCATGGGCAGCTACATCGCCCAgg                                                                                                                               <  1:186090/150‑1 (MQ=255)
                      aCTGGGCAACCTCGGCCTGTTCGCCCGCCATCATGGCTGGAATGCCGTGGTCAATGACCTGGGGTGTGTGGCCCAGCACATCGGCCAGCAGTTCCCGTGCACGCCGCTGTTCCTGTTCGGCCACAGCATGGGCAGCTACATCGCCCAGGc                                                                                                                              <  1:231753/150‑1 (MQ=255)
                              aCCTCGGCCTGTTCGCCCGCCATCATGGCTGGAATGCCGTGGTCAATGACCTGGGGTGTGTGGCCCAGCACATCGGCCAGCAGTTCCCGTGCACGCCGCTGTTCCTGTTCGGCCACAGCATGGGCAGCTACATCGCCCAGGCGTACctgc                                                                                                                      <  1:728808/150‑1 (MQ=255)
                                 tCGGCCTGTTCGCCCGCCATCATGGCTGGAATGCCGTGGTCAATGACCTGGGGTGTGTGGGGCAGCACATAGCCGCCCAGTTCTCGCGCGCGCCGCTCTGCTTCTTTTCCCCCACCATGGGCGCCTCCACCTCCCCGGCGTACCtcctgc                                                                                                                   >  2:556915/1‑150 (MQ=255)
                                      cTGTTCGCCCGCCATCATGGCTGGAATGCCGTGGTCAATGACCTGGGGTGTGTGGCCCAGCACATCGGCCAGCAGTTCCCGTGCACGCCGCTGTTCCTGTTCGGCCACAGCATGGGCAGCTACATCGCCCAGGCGTACCTGCTGCATcac                                                                                                              >  2:1020741/1‑150 (MQ=255)
                                       tGTTCGCCCGCCATCATGGCTGGAATGCCGTGGTCAATGACCTGGGGTGTGTGGCCCAGCACATCGGCCAGCAGTTCCCGTGCACGCCGCTGTTCCTGTTCGGCCACAGCATGGGCAGCTACATCGCCCAGGCGTACctgc                                                                                                                      <  2:781158/141‑1 (MQ=255)
                                       tGTTCGCCCGCCATCATGGCTGGAATGCCGTGGTCAATGACCTGGGGTGTGTGGCCCAGCACATCGGCCAGCAGTTCCCGTGCACGCCGCTGTTCCTGTTCGGCCACAGCATGGGCAGCTACATCGCCCAGGCGTACctgc                                                                                                                      >  1:781158/1‑141 (MQ=255)
                                       tGTTCGCCCGCCATCATGGCTGGAATGCCGTGGTCAATGACCTGGGGTGTGTGGCCCAGCACATCGGCCAGCAGTTCCCGTGCACGCCGCTGTTCCTGTTCGGCCACAGCATGGGCAGCTACATCGCCCAGGCGTACCTGCTGCATcaca                                                                                                             <  2:1034343/150‑1 (MQ=255)
                                         ttCGCCCGCCATCATGGCTGGAATGCCGTGGTCAATGACCTGGGGTGTGTGGCCCAGCACATCGGCCAGCAGTTCCCGTGCACGCCGCTGTTCCTGTTCGGCCACAGCATGGGCAGCTACATCGCCCAGGCGTACCTGCTGCATCACAGt                                                                                                           <  2:809478/150‑1 (MQ=255)
                                           cgcccgccATCATGGCTGGAATGCCGTGGTCAATGACCTGGGGTGTGTGGCCCAGCACATCGGACAGCAGTTCCCGTGCACGCCGCTGTTCCTGTTCGGCCACAGCATGGGCAGCTACATCGCCCAGGCGTACCTGCTGCACCACAGTgg                                                                                                         <  1:662866/150‑1 (MQ=255)
                                                    tcatGGCTGGAATGCCGTGGTCAATGACCTGGGGTGTGTGGCCCAGCACATCGGCCAGCAGTTCCCGTGCACGCCGCTGTTCCTGTTCGGCCACAGCATGGGCAGCTACATCGCCCAGGCGTACCTGCGGCTGCACAGTGGCAGCCTGCa                                                                                                >  2:880167/1‑150 (MQ=255)
                                                    gcagcaggtacgcctgggcgatgtagctgcccatgcTGTGGCCCAGCACATCGGCCAGCAGTTCCCGTGCACGCCGCTGTTCCTGTTCGGCCACAGc                                                                                                                                                     <  2:480651‑M1/61‑1 (MQ=255)
                                                    gcagcaggtacgcctgggcgatgtagctgcccatgcTGTGGCCCAGCACATCGGCCAGCAGTTCCCGTGCACGCCGCTGTTCCTGTTCGGCCACAGc                                                                                                                                                     >  1:480651‑M1/37‑97 (MQ=255)
                                                      atGGCTGGAATGCCGTGGTCAATGACCTGGGGTGTGTGGCCCAGCACATCGGCCAGCAGTTCCCGTGCACGCCGCTGTTCCTGTTCGGCCACAGCATGGGCAGCTACATCGCCCAGGCGTACCTGCTGCATCACAGTGGCAGCCTGCACg                                                                                              >  1:86358/1‑150 (MQ=255)
                                                         gCTGGAATGCCGTGGTCAATGACCTGGGGTGTGTGGCCCAGCACATCGGCCAGCAGTTCCCGTGCACGCCGCTGTTCCTGTTCGGCCACAGCATGGGCAGCTACATCGCCCAGGCGTACCTGCTGCATCACAGTGGCAGCCTGCACgggg                                                                                           <  2:661115/150‑1 (MQ=255)
                                                            ggAATGCCGTGGTCAATGACCTGGGGTGTGTGGCCCAGCACATCGGCCAGCAGTTCCCGTGCACGCCGCTGTGCCTGTTCGGCCACAGCATGGGCAGCTACATCGCCCAGGCGTACCTGCTGCATCACAGTGGCAGCCTGCACGGGGCGa                                                                                        <  1:1169947/150‑1 (MQ=255)
                                                                tGCCGTGGTCAATGACCTGGGGTGTGTGGCCCAGCACATCGGCCAGCAGTTCCCGTGCACGCCGCTGTTCCTGTTCGGCCACAGCATGGGCAGCTACATCGCCCAGGCGTACCTGCTGCATCACAGTGGCAGc                                                                                                     <  1:183458/133‑1 (MQ=255)
                                                                tGCCGTGGTCAATGACCTGGGGTGTGTGGCCCAGCACATCGGCCAGCAGTTCCCGTGCACGCCGCTGTTCCTGTTCGGCCACAGCATGGGCAGCTACATCGCCCAGGCGTACCTGCTGCATCACAGTGGCAGc                                                                                                     >  2:183458/1‑133 (MQ=255)
                                                                    gTGGTCAATGACCTGGGGTGTGTGGCCCAGCACATCGGCCAGCAGTTCCCGTGCACGCCGCTGTTCCTGTTCGGCCACAGCATGGGCAGCTACATCGCCCAGGCGTACCTGCTGCATCACAGTGGCAGCCTGCACGGGGCGATCCTTAGc                                                                                >  1:357935/1‑150 (MQ=255)
                                                                    gTGGTCAATGACCTGGGGTGTGTGGCCCAGCACATCGGCCAGCAGTTCCCGTGCACGCCGCTGTTCCTGTTCGGCCACAGCATGGGCAGCTACATCGCCCAGGCGTACCTGCTGCATCACAGTGGCAGCCTGCACGGGGCGATCCTTAGc                                                                                >  2:344010/1‑150 (MQ=255)
                                                                          aaTGACCTGGGGTGTGTGGCCCAGCACATCGGCCAGCAGTTCCCGTGCACGCCGCTGTTCCTGTTCGGCCACAGCATGGGCAGCTACATCGCCCAGGCGTACCTGCTGCATCACAGTGGCAGCCTGCACGGGGCGATCCTTAGCGGTTcc                                                                          <  1:344010/150‑1 (MQ=255)
                                                                             gctgcccatgctgtggccgaacaggaacagcggcgtgcacgggaactgctggccgatgtgctgggccacaGCATGGGCAGCTACATCGCCCAGGCGTACCTGCTGCATCACAGTGGCAGCCTGCACGGGGCGATCCTTAg                                                                                 <  2:1056408‑M2/70‑1 (MQ=255)
                                                                             gctgcccatgctgtggccgaacaggaacagcggcgtgcacgggaactgctggccgatgtgctgggccacaGCATGGGCAGCTACATCGCCCAGGCGTACCGGCTGCATCACAGTGGCAGCCTGCACGGGGCGATCCTTAg                                                                                 >  1:1056408‑M2/71‑140 (MQ=255)
                                                                               ccTGGGGTGTGTGGCCCAGCACATCGGCCAGCAGTTCCCGTGCACGCCGCTGTTCCTGTTCGGCCACAGCATGGGCAGCTACATCGCCCAGGCGTACCTGCTGCATCACAGTGGCAGCCTGCACGGGGCGATCCTTAGCGGTTCCAACTa                                                                     >  1:1157906/1‑150 (MQ=255)
                                                                                    ggTGTGTGGCCCAGCACATCGGCCAGCAGTTCCCGTGCACGCCGCTGTTCCTGTTCGGCCACAGCATGGGCAGCTACATCGCCCAGGCGTACCTGCTGCATCACAGTGGCAGCCTGCACGGGGCGATCCTTAGCGGTTCCAACTACCAAc                                                                <  2:1157906/150‑1 (MQ=255)
                                                                                      tgtgtgGCCCAGCACATCGGCCAGCAGTTCCCGTGCACGCCGCTGTTCCTGTTCGGCCACAGCATGGGCAGCTACATCGGAAGCGCGTACCTGCTGCATCACAGTGGCAGCCTGACCCCAGCCACTCTTTGCGGTTTCATCTACCAACCg                                                              >  1:866755/1‑150 (MQ=255)
                                                                                      gctgtggccgaacaggaacagcggcgtgcacgggaactgctggccgatgtgctgggccacaGCATGGGCAGCTACATCGCCCAGGCGTACCtgctgc                                                                                                                   <  2:480651‑M2/36‑1 (MQ=255)
                                                                                      gctgtggccgaacaggaacagcggcgtgcacgggaactgctggccgatgtgctgggccacaGCATGGGCAGCTACATCGCCCAGGCGTACCtgctgc                                                                                                                   >  1:480651‑M2/62‑97 (MQ=255)
                                                                                               cAGCACATCGGCCAGCAGTTCCCGTGCACGCCGCTGTTCCTGTTCGGCCACAGCATGGGCAGCTACATCGCCCAGGCGTACCTGCTGCATCACAGTGGCAGCCTGCACGGGGCGATCCTTAGCGGTTCCAACTACCAACCGGCCGTGCTg                                                     >  1:350466/1‑150 (MQ=255)
                                                                                                  aacaTCGGCCAGCAGTTCCCGTGCACGCCGCTGTTCCTATGCGGCCACAGCATGGGCAGCTACATCGCCCAGGCGTACCTGCTGCATCACAGTGGCAGCCTGCACGGGGCGATCCTTAGCGGTTCCAACTACCAACCGGCCGTGCTGTAc                                                  <  1:1036043/149‑1 (MQ=255)
                                                                                                    caTCGGCCAGCAGTTCCCGTGCACGCCGCTGTTCCTGTTCGGCCACAGCATGGGCAGCTACATCGCCCAGGCGTACCTGCTGCATCACAGTGGCAGCCTGCACGGGGCGATCCTTAGCGGTTCCAACTACCAACCGGCCGTGCTGTACCg                                                >  2:1060169/1‑150 (MQ=255)
                                                                                                     aTCGGCCAGCAGTTCCCGTGCACGCCGCTGTTCCTGTTCGGCCACAGCATGGGCAGCTACATCGCCCAGGCGTAc                                                                                                                          >  2:419502/1‑75 (MQ=255)
                                                                                                     aTCGGCCAGCAGTTCCCGTGCACGCCGCTGTTCCTGTTCGGCCACAGCATGGGCAGCTACATCGCCCAGGCGTAc                                                                                                                          <  1:419502/75‑1 (MQ=255)
                                                                                                           cagcagTTCCCGTGCACGCCGCTGTTCCTGTTCGGCCACAGCATGGGCAGCTACATCGCCCAGGCGTACCTGCTGCATCACAGTGGCAGCCTGCACGGGGCGATCCTTAGCGGTTCCAACTACCAACCGGCCGTGCTGTACCGCTTTgcg                                         >  2:110199/1‑150 (MQ=255)
                                                                                                                  tCCCGTGCACGCCGCTGTTCCTGTTCGGCCACAGCATGGGCAGCTACATCGCCCAGGCGTACCTGCTGCATCACAGTGGCAGCCTGCACGGGGCGATCCTTAGCGGTTCCAACTACCAACCGGCCGTGCTGTACCGCTTTGCGCGGCTGa                                  <  1:880167/150‑1 (MQ=255)
                                                                                                                    ccGTGCACGCCGCTGTTCCTGTTCGGCCACAGCATGGGCAGCTACATCGCCCAGGCGTAc                                                                                                                          >  2:1129943/1‑60 (MQ=255)
                                                                                                                    ccGTGCACGCCGCTGTTCCTGTTCGGCCACAGCATGGGCAGCTACATCGCCCAGGCGTAc                                                                                                                          <  1:1129943/60‑1 (MQ=255)
                                                                                                                     cGTGCACGCCGCTGTTCCTGTTCGGCCACAGCATGGGCAGCTACATCGCCCAGGCGTACCTGCTGCATCACAGTGGCAGCCTGCACGGGGCGATCCTTAGCGGTTCCAACTACCAACCCGCCGTGCTGTACCGCTTTGCGCGGCTGATTg                               <  2:743009/150‑1 (MQ=255)
                                                                                                                       tGCACGCCGCTGTTCCTGTTCGGCCACAGCATGGGCAGCTACATCGCCCAGGCGTACCTGCTGCATCACAGTGGCAGCCTGCACGGGGCGATCCTTAGCGGTTCCAACTACCAACCGGCCGTGCTGTACCGCTTTGCGCGGCTGATTGcc                             >  1:508071/1‑150 (MQ=255)
                                                                                                                        gCACGCCGCTGTTCCTGTTCGGCCACAGCATGGGCAGCTACATCGCCCAGGCGTACCTGCTGCATCACAGTGGCAGCCTGCACGGGGCGATCCTTAGCGGTTCCAACTACCAACCGGCCGTGCTGTACCGCTTTGCGCGGCTGATTGccc                            <  2:350466/150‑1 (MQ=255)
                                                                                                                            gccgcTGTTCCTGTTCGGCCACAGCATGGGCAGCTACATCGCCCAGGCGTACCTGCTGCATCACAGTGGCAGCCTGCACGGGGCGATCCTTAGCGGTTCCAACTACCAACCGGCCGTGCTGTACCGCTTTGCGCGGCTGATTGCCCGGCt                        <  1:1020741/150‑1 (MQ=255)
                                                                                                                            gccgcTGTTCCTGTTCGGCCACAGCATGGGCAGCTACATCGCCCAGGCGTACCTGCTGCATCACAGTGGCAGCCTGCACGGGGCGATCCTTAGCGGTTCCAACTACCAACCGGCCGTGCTGTACCGCTTTGCGCGGCTGATTGCCCGGCt                        <  1:110199/150‑1 (MQ=255)
                                                                                                                               gcTGTTCCTGTTCGGCCACAGCATGGGCAGCTACATCGCCCAGGCGTACCTGCTGCATCACAGTGGCAGCCTGCACGGGGCGATCCTTAGCGGTTCCAACTACCAACCGGCCGTGCTGTACCGCTTTGCGCGGCTGATTGCCCGGCTGGa                     <  2:685950/150‑1 (MQ=255)
                                                                                                                                    tcctgttcGGCCACAGCATGGGCAGCTACATCGCCCAGGCGTACCTGCTGCATCACAGTGGCAGCCTGCACGGGGCGATCCTTAGCGGTTCCAACTACCAACCGGCCGTGCTGTACCGCTTTGCGCGGCTGATTGCCCGGCTGGa                     <  2:282583/145‑1 (MQ=255)
                                                                                                                                    tcctgttcGGCCACAGCATGGGCAGCTACATCGCCCAGGCGTACCTGCTGCATCACAGTGGCAGCCTGCACGGGGCGATCCTTAGCGGTTCCAACTACCAACCGGCCGTGCTGTACCGCTTTGCGCGGCTGATTGCCCGGCTGGa                     >  1:282583/1‑145 (MQ=255)
                                                                                                                                      ctgttcGGCCACAGCATGGGCAGCTACATCGCCCAGGCGTACCTGCTGCATCACAGTGGCAGCCTGCACGGGGCGATCCTTAGCGGTTCCAACTACCAACCGGCCGTGCTGTACCGCTTTGCGCGGCTGATTGCCCGGCTGGAGTCCTgg              <  1:1060169/150‑1 (MQ=255)
                                                                                                                                      ctgttcGGCCACAGCATGGGCAGCTACATCGCCCAGGCGTACCTGCTGCATCACAGTGGCAGCCTGCACGGGGCGATCCTTAGCGGTTCCAACTACCAACCGGCCGTGCTGTACCGCTTTGCGCGGCTGATTGCCCGGCTGGAGTCCTgg              >  2:1206552/1‑150 (MQ=255)
                                                                                                                                       tgttcGGCCACAGCATGGGCAGCTACATCGCCCAGGCGTACCTGCTGCATCACAGTGGCAGCCTGCACGGGGCGATCCTTAGCGGTTCCAACTACCAACCGGCCGTGCTGTACCGCTTTGCGCGGCTGATTGCCCGGCTGGAGTCCTGgc             <  1:556915/150‑1 (MQ=255)
                                                                                                                                        gttcGGCCACAGCATGGGCAGCTACATCGCCCAGGCGTACCTGCTGCATCACAGTGGCAGCCTGCACGGGGCGATCCTTAGCGGTTCCAACTACCAACCGGCCGTGCTGTACCGCTTTGCGCGGCTGATTGCCCGGCTGGAGTCCTGgcg            >  1:646571/1‑150 (MQ=255)
                                                                                                                                         ttcGGCCACAGCATGGGCAGCTACATCGCCCAGGCGTACCTGCTGCATCACAGTGGCAGCCTGCACGGGGCGATCCTTAGCGGTTCCAACTACCAACCGGCCGTGCTGTACCGCTTTGCGCGGCTGATTGCCCGGCTGGAGTCCTGgcgc           >  2:48206/1‑150 (MQ=255)
                                                                                                                                             gccacaGCATGGGCAGCTACATCGCCCAGGCGTACCTGCTGCATCACAGTGGCAGCCTGCACGGGGCGATCCTTAGCGGTTCCAACTACCAACCGGCCGTGCTGTACCGCTTTGCGCGGCTGATTGCCCGGCTGGAGTCCTGGCGCCAgg       >  1:304313‑M2/7‑150 (MQ=255)
                                                                                                                                              ccacaGCATGGGCAGCTACATCGCCCAGGCGTACCTGCTGCATCACAGTGGCAGCCTGCACGGGGCGATCCTTAGCGGTTCCAACTACCAACCGGCCGTGCTGTACCGCTTTGCGCGGCTGATTGCCCGGCTGGAGTCCTGGCGCCAggg      <  2:646571‑M2/145‑1 (MQ=255)
                                                                                                                                              ccacaGCATGGGCAGCTACATCGCCCAGGCGTACCTGCTGCATCACAGTGGCAGCCTGCACGGGGCGATCCTTAGCGGTTCCAACTACCAACCGGCCGTGCTGTACCGCTTTGCGCGGCTGATTGCCCGGCTGGAGTCCTGGCGCCAggg      >  1:292298‑M2/6‑150 (MQ=255)
                                                                                                                                               cacaGCATGGGCAGCTACATCGCCCAGGCGTACCTGCTGCATCACAGTGGCAGCCTGCACGGGGCGATCCTTAGCGGTTCCAACTACCAACCGGCCGTGCTGTACCGCTTTGCGCGGCTGATTGCCCGGCTGGAGTCCTg               >  2:394958‑M2/5‑140 (MQ=255)
                                                                                                                                               cacaGCATGGGCAGCTACATCGCCCAGGCGTACCTGCTGCATCACAGTGGCAGCCTGCACGGGGCGATCCTTAGCGGTTCCAACTACCAACCGGCCGTGCTGTACCGCTTTGCGCGGCTGATTGCCCGGCTGGAGTCCTg               <  1:394958‑M2/136‑1 (MQ=255)
                                                                                                                                                  aGCATGGGCAGCTACATCGCCCAGGCGTACCTGCTGCATCACAGTGGCAGCCTGCACGGGGCGATCCTTAGCGGTTCCAACTACCAACCGGCCGTGCTGTACCGCTTTGCGCGGCTGATTGCCCGGCTGGAGTCCTGGCGCCAGGGGCCa  >  1:861683‑M2/2‑150 (MQ=255)
                                                                                                                                                   |                                                                                                                                                    
GTGGCCACGGGCGCACTGCCGAACTGGGCAACCTCGGCCTGTTCGCCCGCCATCATGGCTGGAATGCCGTGGTCAATGACCTGGGGTGTGTGGCCCAGCACATCGGCCAGCAGTTCCCGTGCACGCCGCTGTTCCTGTTCGGCCACAGCATGGGCAGCTACATCGCCCAGGCGTACCTGCTGCATCACAGTGGCAGCCTGCACGGGGCGATCCTTAGCGGTTCCAACTACCAACCGGCCGTGCTGTACCGCTTTGCGCGGCTGATTGCCCGGCTGGAGTCCTGGCGCCAGGGGCCA  >  NC_002947/5175436‑5175731

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.