New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	6005467 =	57 (1.260)	3 (0.070)	3/244	NT	5.4%	coding (274/1395 nt)	ydcJ	metalloprotein
	?	NC_002947	6005524 =	49 (1.100)					coding (331/1395 nt)	ydcJ	metalloprotein

AAATCGAGCGCCTGGACCAGGAACGTCACGGCGCCATCCGCGTCGGCACCGCCGAAGAACTGGCCACCATCGCCCGCCTGTTCGCCGTCATGGGCATGCAACCGGTCGGCTATTATGACCTCAGCTCCGCTGGCGTACCGGTGCATTCCACTGCCTTTCGCGCGGTGCACGAGCAATCGCTGCATGTCAGCCCGTTCCGTGTGTTCACCTCGCTGCTGCGCCTGGAGCTGATCGACAACCCGCAGTTGCGCGAGCTGGCACAGAGCATCCTGGCCAAGCGCCAGATCTTCACCTC  >  NC_002947/6005375‑6005669                                                                                                                                                      |                                                                                                                                                  gggttgtcgatcagctccaggcgcagcagcgaggtgaacacacggaacgggctgacatgcagcgattgctcgtgcaccgcgcgaaaggcagtGGCATGCAACCGGTCGGCTATTATGACCTCAGCTCCGCTGGCGTACCGGTGCATTCCa                                                                                                                                                   >  1:704975‑M1/93‑150 (MQ=255) aaaTCGAGCGCCTGGACCAGGAACGTCACGGCGCCATCCGCGTCGGCACCGCCGAAGAACTGGCCACCATCGCCCGCCTGTTCGCCGTCATGGGCATGCAACCGGTCGGCTATTATGACCTCAGCTCCGCTGGCGTACCGGTGCATTCCa                                                                                                                                                   <  1:705046/150‑1 (MQ=255)   aTCGAGCGCCTGGACCAGGAACGTCACGGCGCCATCCGCGTCGGCACCGCCGAAGAACTGGCCACCATCGCCCGCCTGTTCGCCGTCATGGGCATGCAACCGGTCGGCTATTATGACCTCAGCTCCGCTGGCGTACCGGTGCATTCCACt                                                                                                                                                 <  2:806422/150‑1 (MQ=255)               gACCAGGAACGTCACGGCTCCACCCCGGGCCGCTCCGCCGAAGAACTGGCCACCATCGCCCGCCTGTTCGCCGTCATGGGCATGCAACCGGTCGGCTATTATGACCTCAGCTCCGCTGTCGTACCGGTGCATTCCACTGCCTTTcgcgcg                                                                                                                                     <  1:127/150‑1 (MQ=255)                 ccAGGAACGTCACGGCGCCATCCGCGTCGGCACCGCCGAAGAACTGGCCACCATCGCCCGCCTGTTCGCCGTCATGGGCATGCAACCGGTCGGCTATTATGACCTCAGCTAGACTGGCGTACCGGTGCATTCCACTGCCTTTCGCGCGGt                                                                                                                                   >  1:317019/1‑150 (MQ=255)                  cAGGAACGTCACGGCGCCATCCGCGTCGGCACCGCCGAAGAACTGGCCACCATCGCCCGCCTGTTCGCCGTCATGGGCATGCAACCGGTCGGCTATTATGACCTCAGCTCCGCTGGCGTACCGGTGCATTCCACTGCCTTTCGCGCGGTg                                                                                                                                  <  2:1012634/150‑1 (MQ=255)                     gAACGTCACGGCGCCATCCGCGTCGGCACCGCCGAAGAACTGGCCACCATCGCCCGCCTGTTCGCCGTCATGGGCATGCAACCGGTCGGCTATTATGACCTCAGCTCCGCTGGCGTACCGGTGCATTCCACTGCCTTTCGCGCGGTGCAc                                                                                                                               <  2:946600/150‑1 (MQ=255)                       aCGTCACGGCGCCATCCGCGTCGGCACCGCCGAAGAACTGGCCACCATCGCCCGCCTGTTCGCCGTCATGGGCATGCAACCGGTCGGCTATTATGACCTCAGCTCCGCTGGCGTACCGGTGCATTCCACTGCCTTTCGCGCGGTGCACGa                                                                                                                             >  2:1110375/1‑150 (MQ=255)                              ggCGCCATCCGCGTCGGCACCGCCGAAGAACTGGCCACCATCGCCCGCCTGTTCGCCGTCATGGGCATGCAACCGGTCGGCTATTATGACCTCAGCTCCGCTGGCGTACCGGTGCATTCCACTGCCTTTCGCGCGGTGCACGAGCAATCg                                                                                                                      >  1:273224/1‑150 (MQ=255)                                  ccATCCGCGTCGGCACCGCCGAAGAACTGGCCACCATCGCCCGCCTGTTCGCCGTCATGGGCATGCAACCGGTCGGCTATTATGACCTCAGCTCCGCTGGCGTACCGGTGCATTCCACTGCCTTTCGCGCGGTGCACGAGCAATCGCTGc                                                                                                                  <  2:478800/150‑1 (MQ=255)                                    cagttcgTCGGCACCGCCGAAGAACTGGCCACCATCGCCCGCCTGTTCGCCGTCATGGGCATGCAACCGGTCGGCTATTATGACCTCAGCTCCGCTGGCGTACCGGTGCATTCCACTGCCTTTCGCGCGGTGCACGAGCAATCGCTGCAt                                                                                                                >  1:254045/6‑150 (MQ=255)                                    agccGCGTCGGCACCGCCGAAGAACTGGCCACCATCGCCCGCCTGTTCGCCGTCATGGGCATGCAACCGGTCGGCTATTATGACCTCAGCTCCGCTGGCGTACCGGTGCATTCCACTGCCTTTCGCGCGGTGCACGAGCAATCGCTGCAt                                                                                                                <  2:789316/148‑1 (MQ=255)                                        gcgTCGGCACCGCCGAAGAACTGGCCACCATCGCCCGCCTGTTCGCCGTCATGGGCATGCAACCGGTCGGCTATTATGACCTCAGCTCCGCTGGCGTACCGGTGCATTCCACTGCCTTTCGCGCGGTGCACGAGCAATCGCCGCATGTCa                                                                                                            >  2:551417/1‑150 (MQ=255)                                           tCGGCACCGCCGAAGAACTGGCCACCATCGCCCGCCTGTTCGCCGTCATGGGCATGCAACCGGTCGGCTATTATGACCTCAGCTCCGCTGGCGTACCGGTGCATTCCACTGCCTTTCGCGCGGTGCACGAGCAATCGCTGCAt                                                                                                                >  1:283907/1‑143 (MQ=255)                                           tCGGCACCGCCGAAGAACTGGCCACCATCGCCCGCCTGTTCGCCGTCATGGGCATGCAACCGGTCGGCTATTATGACCTCAGCTCCGCTGGCGTACCGGTGCATTCCACTGCCTTTCGCGCGGTGCACGAGCAATCGCTGCAt                                                                                                                <  2:283907/143‑1 (MQ=255)                                                  cgccgAAGAACTGGCCACCATCGCCCGCCTGTTCGCCGTCATGGGCATGCAACCGGTCGGCTATTATGACCTCAGCTCCGCTGGCGTACCGGTGCATTCCACTGCCTTTCGCGCGGTGCACGAGCAATCGCTGCATGTCAGCCCGTTCCg                                                                                                  >  2:322631/1‑150 (MQ=255)                                                   gccgAAGAACTGGCCACCATCGCCCGCCTGTTCGCCGTCATGGGCATGCAACCGGTCGGCTATTATGACCTCAGCTCCGCTGGCGTACCGGTGCATTCCACTGCCTTTCGCGCGGTGCACGAGCAATCGCTGCATGTCAGCCCGTTCCgt                                                                                                 <  2:712201/150‑1 (MQ=255)                                                                    caTCGCCCGCCTGTTCGCCGTCATGGGCATGCAACCGGTCGGCGATTATGACCTCAGCTCCGCTGGCGTACCGGTGCATTCCACTGCCTTTCGCGCGGTGCACGAGCAATCGCTGCATGTCAGCCCGTTCCGTGTGTTCACCTCgctgct                                                                                >  2:874857/1‑150 (MQ=255)                                                                        gcccgccTGTTCGCCGTCATGGGCATGCAACCGGTCGGCTATTATGACCTCAGCTCCGCTGGCGTACCGGTGCATTCCACTGCCTTTCGCGCGGTGCACGAGCAATCGCTGCATGTCAGCCCGTTACGTGTGTTCACCTCGCTGCTgcgc                                                                            <  2:478571/150‑1 (MQ=255)                                                                           cgccTGTTCGCCGTCATGGGCATGCAACCGGTCGGCTATTATGACCTCAGCTCCGCTGGCGTACCGGTGCATTCCACTGCCTTTCGCGCGGTGCACGAGCAATCGCTGCATGTCAGCCCGTTCCGTGTGTTCACCTCGCTGCTGCGCCTg                                                                         <  1:874857/150‑1 (MQ=255)                                                                             ccTGTTCGCCGTCATGGGCATGCAACCGGTCGGCTATTATGACCTCAGCTCCGCTGGCGTACCGGTGCATTCCACTGCCTTTCGCGCGGTGTCCTGTCAATCGCTGCATGTCAGCCCGTTCCGTGTGTTCACCTCGCTGCTGCGCCTGGa                                                                       <  2:595360/150‑1 (MQ=255)                                                                             ccTGTTCGCCGTCATGGGCATGCAACCGGTCGGCTATTATGACCTCAGCTCCGCTGGCGTACCGGTGCATTCCACTGCCTTTCGCGCGGTGCACGAGCAATCGCTGCATGTCAGCCCGTTCCGTGTGTTCACCTCgc                                                                                    <  1:948425/137‑1 (MQ=255)                                                                             ccTGTTCGCCGTCATGGGCATGCAACCGGTCGGCTATTATGACCTCAGCTCCGCTGGCGTACCGGTGCATTCCACTGCCTTTCGCGCGGTGCACGAGCAATCGCTGCATGTCAGCCCGTTCCGTGTGTTCACCTCgc                                                                                    >  2:948425/1‑137 (MQ=255)                                                                             ccTGTTCGCCGTCATGGGCATGCAACCGGTCGGCTATTATGACCTCAGCTCCGCTGGCGTACCGGTGCATTCCACTGCCTTTCGCGCGGTGCACGAGCAATCGCTGCATGTCAGCCCGTTCCGTGTGTTCACCTCGCTGCTGCGCCTgca                                                                       <  2:883225/150‑3 (MQ=255)                                                                             ccTGTTCGCCGTCATGGGCATGCAACCGGTCGGCTATTATGACCTCAGCTCCGCTGGCGTACCGGTGCATTCCACTGCCTTTCGCGCGGTGCACGAGCAATCGCCGCATGTCAGCCCGTTCCGTGTGTTCACCTCGCTGCTGCGCCTGGa                                                                       <  1:551417/150‑1 (MQ=255)                                                                                   cGCCGTCATGGGCATGCAACCGGTCGGCTATTATGACCTCAGCTCCGCTGGCGTACCGGTGCATTCCACTGCCTTTCGCGCGGTGCACGAGCAATCGCTGCATGTCAGCCCGTTCCGTGTGTTCACCTCGCTGCTGCGCCTGGAGCTGAt                                                                 >  2:86902/1‑150 (MQ=255)                                                                                     ccGTCATGGGCATGCAACCGGTCGGCTATTATGACCTCAGCTCCGCTGGCGTACCGGTGCATTCCACTGCCTTTCGCGCGGTGCACGAGCAATCGCTGCATGTCAGCCCGTTCCGTGTGTTCACCTCGCTGCTGCGCCTGGa                                                                       <  1:787500/142‑1 (MQ=255)                                                                                     ccGTCATGGGCATGCAACCGGTCGGCTATTATGACCTCAGCTCCGCTGGCGTACCGGTGCATTCCACTGCCTTTCGCGCGGTGCACGAGCAATCGCTGCATGTCAGCCCGTTCCGTGTGTTCACCTCGCTGCTGCGCCTGGa                                                                       >  2:787500/1‑142 (MQ=255)                                                                                        tCATGGGCATGCAACCGGTCGGCTATTATGACCTCAGCTCCGCTGGCGTACCGGTGCATTCCACTGCCTTTCGCGCGGTGCACGAGCAATCGCTGCATGTCAGCCCGTTCCATGTGTTCACCTCGCTGCTGCGCCTGGAGCTGATCGACa                                                            >  2:624741/1‑150 (MQ=255)                                                                                          aTGGGCATGCAACCGGTCGGCTATTATGACCTCAGCTCCGCTGGCGTACCGGTGCATTCCACTGCCTTTCGCGCGGTGCACGAGCAATCGCTGCATGTCAGCCCGTTCCGTGTGTTCACCTCGCTGCTGCGCCTGGAGCTGATCGACAAc                                                          >  2:751477/1‑150 (MQ=255)                                                                                            tggaatgcaccggtacgccagcggagctgaggtcataatagccgaccggttgcatgccACTGCCTTTCGCGCGGTGCACGAGCAATCGCTGCATGTCAGCCCGTTCCGTGTGTTCACCTCGCTGCTGCGCCTGGAGCTGATCGACAAccc                                                        >  1:704975‑M2/59‑150 (MQ=255)                                                                                            gggCATGCAACCGGTCGGCTATTATGACCTCAGCTCCGCTGGCGTACCGGTGCATTCCACTGCCTTTCGCGCGGTGCACGAGCAATCGCTGCATGTCAGCCCGTTCCGTGTGTTCACCTCGCTGCTGCGCCTGGAGCTGATCGACAAccc                                                        >  1:926501/1‑150 (MQ=255)                                                                                             GGCATGCAACCGGTCGGCTATTATGACCTCAGCTCCGCTGGCGTACCGGTGCATTCCAc                                                                                                                                                  <  2:711396‑M1/59‑1 (MQ=255)                                                                                             GGCATGCAACCGGTCGGCTATTATGACCTCAGCTCCGCTGGCGTACCGGTGCATTCCAc                                                                                                                                                  >  1:711396‑M1/1‑59 (MQ=255)                                                                                                atgcaccggtacgccagcggagctgaggtcataatagccgaccggttgcatgccACTGCCTTTCGCGCGGTGCACGAGCAATCGCTGCATGTCAGCCCGTTCCGTGTGTTCACCTCGCTGCTGCGCCTGGAGCTGATCGACAACCCGCAg                                                    >  2:407309‑M2/55‑150 (MQ=255)                                                                                                      ccGGTCGGCTATTATGACCTCAGCTCCGCTGGCGTACCGGTGCATTCCACTGCCTTTCGCGCGGTGCACGAGCAATCGCTGCATGTCAGCCTGTTCCGTGTGTTCACCTCGCTGCTGCGCCTGGAGCTGATCGACAACCCGCAGTTgcgc                                              <  1:751477/150‑1 (MQ=255)                                                                                                         tacgccagcggagctgaggtcataatagccgaccggttgcatgccACTGCCTTTCGCGCGGTGCACGAGCAATCGCTGCATGTCAGCCCGTTCCGTGTGTTCACCTCGCTGCTGCGCCTGGAGCTGATCGACAACCCGCAGTTGCGCGAg                                           <  1:407309‑M2/105‑1 (MQ=255)                                                                                                            ggCTATTATGACCTCAGCTCCGCTGGCGTACCGGTGCATTCCACTGCCTTTCGCGCGGTGCACGAGCAATCGCTGCATGTCAGCCCGTTCCGTGTGTTCACCTCGCTGCTGCGCCTGGAGCTGATCGACaa                                                           >  2:732052/1‑131 (MQ=255)                                                                                                            ggCTATTATGACCTCAGCTCCGCTGGCGTACCGGTGCATTCCACTGCCTTTCGCGCGGTGCACGAGCAATCGCTGCATGTCAGCCCGTTCCGTGTGTTCACCTCGCTGCTGCGCCTGGAGCTGATCGACaa                                                           <  1:732052/131‑1 (MQ=255)                                                                                                              cTATTATGACCTCAGCTCCGCTGGCGTACCGGTGCATTCCACTGCCTTTCGCGCGGTGCACGAGCAATCGCTGCATGTCAGc                                                                                                          >  1:645597/1‑82 (MQ=255)                                                                                                              cTATTATGACCTCAGCTCCGCTGGCGTACCGGTGCATTCCACTGCCTTTCGCGCGGTGCACGAGCAATCGCTGCATGTCAGc                                                                                                          <  2:645597/82‑1 (MQ=255)                                                                                                               tattatGACCTCAGCTCCGCTGGCGTACCGGTGCATTCCACTGCCTTTCGCGCGGTGCACGAGCAATCGCTGCATGTCAGCCCGTTCCGTGTGTTCACCTCGCTGCTGCGCCTGGAGCTGATCGACAACCCGCAGTTGCGCGAGCTGGca                                     >  2:707949/1‑150 (MQ=255)                                                                                                                 ttatGACCTCAGCTCCGCTGGCGTACCGGTGCATTCCACTGCCTTTCGCGCGGTGCACGAGCAATCGCTGCATGTCAGCCCGTTCCGTGTGTTCACCTCGCTGCTGCGCCTGGAGCTGATCGACAACCCGCAGTTGCGCGAGCTGGcaca                                   >  2:876544/1‑150 (MQ=255)                                                                                                                 ttatGACCTCAGCTCCGCTGGCGTACCGGTGCATTCCACTGCCTTTCGCGCGGTGCACGAGCAATCGCTGCATGTCAGCCCGTTCCGTGTGTTCACCTCGCTGCTGCGCCTGGAGCTGATCGACAACCCGCAGTTGCGCGAGCTGGcaca                                   >  1:1098547/1‑150 (MQ=255)                                                                                                                    tGACCTCAGCTCCGCTGGCGTACCGGTGCATTCCACTGCCTTTCGCGCGGTGCACGAGCAATCGCTGCATGTCAGCCCGTTCCGTGTGTTCACCTCGCTGCTGCGCCTGGAGCTGATCGACAACCCGCAGTTGCGCGAGCTGGCACagag                                <  2:273224/150‑1 (MQ=255)                                                                                                                        cTCAGCTCCGCTGGCGTACCGGTGCATTCCACTGCCTTTCGCGCGGTGCACGAGCAATCGCTGCATGTCAGCCCGTTCCGTGTGTTCACCTCGCTGCTGCGCCTGGAGCTGATCGACAACCCGCAGTTGCGCGAGCTgg                                       >  2:908466/1‑139 (MQ=255)                                                                                                                        cTCAGCTCCGCTGGCGTACCGGTGCATTCCACTGCCTTTCGCGCGGTGCACGAGCAATCGCTGCATGTCAGCCCGTTCCGTGTGTTCACCTCGCTGCTGCGCCTGGAGCTGATCGACAACCCGCAGTTGCGCGAGCTgg                                       <  1:908466/139‑1 (MQ=255)                                                                                                                        cTCAGCTCCGCTGGCGTACCGGTGCATTCCACTGCCTTTCGCGCGGTGCACGAGCAATCGCTGCATGTCAGCCCGTTCCGTGTGTTCACCTCGCTGCTGCGCCTGGAGCTGATCGACAACCCGCAGTTGCGCGAGCTGGCACAGAGCATc                            >  1:48468/1‑150 (MQ=255)                                                                                                                                cGCTGGCGTACCGGTGCATTCCACTGCCTTTCGCGCGGTGCACGAGCAATCGCTGCATGTCAGCCCGTTCCGTGTGTTCACCTCGCTGCTGCGCCTGGAGCTGATCGACAACCCGCAGTTGCGCGAGCTGGCACAGAGCATCCTGGCCaa                    <  1:322631/150‑1 (MQ=255)                                                                                                                                   tGGCGTACCGGTGCATTCCACTGCCTTTCGCGCGGTGCACGAGCAATCGCTGCATGTCAGCCCGTTCCGTGTGTTCACCTCGCTGCTGCGCCTGGAGCTGATCGACAACCCGCAGTTgc                                                >  1:910979/1‑119 (MQ=255)                                                                                                                                   tGGCGTACCGGTGCATTCCACTGCCTTTCGCGCGGTGCACGAGCAATCGCTGCATGTCAGCCCGTTCCGTGTGTTCACCTCGCTGCTGCGCCTGGAGCTGATCGACAACCCGCAGTTgc                                                <  2:910979/119‑1 (MQ=255)                                                                                                                                        tACCGGTGCATTCCACTGCCTTTCGCGCGGTGCACGAGCAATCGCTGCATGGCAGCCCGTTCCGTGTGTTCACCTCGCTGCTGCGCCTGGAGCTGATCGACAACCCGCAGTTGCGCGAGCTGGCACAGAGCATCCTGGCCAAGCGCCAGa            >  1:336552/1‑150 (MQ=255)                                                                                                                                          ccGGTGCATTCCACTGCCTTTCGCGCGGTGCACGAGCAAt                                                                                                                        >  2:199597/1‑40 (MQ=255)                                                                                                                                          ccGGTGCATTCCACTGCCTTTCGCGCGGTGCACGAGCAAt                                                                                                                        <  1:199597/40‑1 (MQ=255)                                                                                                                                          ccGGTGCATTCCACTGCCTTTCGCGCGGTGCACGAGCAATCGCTGCATGTCAGCCCGTTCCGTGTGTTCACCTCGCTGCTGCGCCTGGAGCTGATCGACAACCCGCAGTTGCGCGAGCTGGCACAGAGCATCCTGGCCAAGCGCCAGATc          <  2:380673/150‑1 (MQ=255)                                                                                                                                           cGGTGCATTCCACTGCCTTTCGCGCGGTGCACGAGCAATCGCTGCATGTCAGCCCGTTCCGTGTGTTCACCTCGCTGCTGCGCCTGGa                                                                       >  2:554849/1‑88 (MQ=255)                                                                                                                                           cGGTGCATTCCACTGCCTTTCGCGCGGTGCACGAGCAATCGCTGCATGTCAGCCCGTTCCGTGTGTTCACCTCGCTGCTGCGCCTGGa                                                                       <  1:554849/88‑1 (MQ=255)                                                                                                                                                  ttCCACTGCCTTTCGCGCGGTGCACGAGCAATCGCTGCATGTCAGCCCGTTCCGTGTGTTCACCTCGCTGCTGCGCCTGGAGCTGATCGACAACCCGCAGTTGCGCGAGCTGGCACAGAGCATCCTGGCCAAGCGCCAGATCTTCACCTc  >  1:600697/1‑150 (MQ=255)                                                                                                                                                      |                                                                                                                                                  AAATCGAGCGCCTGGACCAGGAACGTCACGGCGCCATCCGCGTCGGCACCGCCGAAGAACTGGCCACCATCGCCCGCCTGTTCGCCGTCATGGGCATGCAACCGGTCGGCTATTATGACCTCAGCTCCGCTGGCGTACCGGTGCATTCCACTGCCTTTCGCGCGGTGCACGAGCAATCGCTGCATGTCAGCCCGTTCCGTGTGTTCACCTCGCTGCTGCGCCTGGAGCTGATCGACAACCCGCAGTTGCGCGAGCTGGCACAGAGCATCCTGGCCAAGCGCCAGATCTTCACCTC  >  NC_002947/6005375‑6005669

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.