Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,656,955 | A→C | 8.6% | L264R (CTG→CGG) | tktA ← | transketolase A |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,656,955 | 0 | A | C | 8.6% | 141.0 / 5.2 | 54 | L264R (CTG→CGG) | tktA | transketolase A |
Reads supporting (aligned to +/- strand): ref base A (25/24); new base C (3/2); total (28/26) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.95e-01 |
GCGTCGAAGCGCTGGTTCCACTCGGCTTCAACCTTGGCACCGGCGGCCTTGGCATCCCACTCGGCGTAGATGTCGGCCGGGATTTCGAACGGGCCGTGGTTCCAGTTCAGGGCCTGGCGGGTCAGGGCGATTTCGTCGTTGCCCAGCGGGGCACCGTGGCAGTCTTCCTTGCCCTGCTTGTTCGGCGAACCGAAACCGATGGTGGTCTTGCAGCAGATCAGGGTCGGGCGATCGCTCTTGCGGGCGGTCTCGATGGCCATCTTGATTTCTTCGGCATCGTGGCCGT > NC_002947/5656811‑5657096 | gCGTCGAAGCGCTGGTTCCACTCGGCTTCAACCTTGGCACCGGCGGCCTTGGCATCCCACTCGGCGTAGATGTCGGCCGGGATTTCGAACGGGCCGTGGTTCCAGTTCAGGGCCTGGCGGGTCAGGGCGATTTCGTCGTTGCCCAGCggg < 1:319661/150‑1 (MQ=255) cGTCGAAGCGCTGGTTCCACTCGGCTTCAACCTTGGCACCGGCGGCCTTGGCATCCCACTCGGCGTAGATGTCGGCCGGGATTTCGAACGGGCCGTGGTTCCAGTTCAGGGCCTGGCGGGTCAGGGCGATTTCGTCGTTGCCCAGCgggg > 2:138965/1‑150 (MQ=255) tCGAAGCGCTGGTTCCACTCGGCTTCAACCTTGGCACCGGCGGCCTTGGCATCCCACTCGGCGTAGATGTCGGCCGGGATTTCGAACGGGCCGTGGTTCCAGTTCAGGGCCTGGCGGGTCAGGGCGATTTCGTCGTTGCCCCGCGGGGCa > 2:487518/1‑150 (MQ=255) gAAGCGCTGGTTCCACTCGGCTTCAACCTTGGCACCGGCGGCCTTGGCATCCCACTCGGCGTAGATGTCGGCCGGGATTTCGAACGGGCCGTGGTTCCAGTTCAGGGCCTGGCGGGTCAGGGCGATTTCGTCGTTGCCCAGCGGGGCAcc > 1:455854/1‑150 (MQ=255) cTGGTTCCACTCGGCTTCAACCTTGGCACCGGCGGCCTTGGCATCCCACTCGGCGTAGATGTCGGCCGGGATTTCGAACGGGCCGTGGTTCCAGTTCAGGGCCTGGCGGGTCAGGGCGATTTCGTCGTTGCCCAGCgg > 1:670536/1‑138 (MQ=255) cTGGTTCCACTCGGCTTCAACCTTGGCACCGGCGGCCTTGGCATCCCACTCGGCGTAGATGTCGGCCGGGATTTCGAACGGGCCGTGGTTCCAGTTCAGGGCCTGGCGGGTCAGGGCGATTTCGTCGTTGCCCAGCgg < 2:670536/138‑1 (MQ=255) ggTTCCACTCGGCTTCAACCTTGGCACCGGCGGCCTTGGCATCCCACTCGGCGTAGATGTCGGCCGGGATTTCGAACGGGCCGTGGTTCCAGTTCAGGGCCTGGCGGGTCAGGGCGATTTCGTCGTTGCCCAGCGGGGCACCGTGGCAGt > 2:993396/1‑150 (MQ=255) aCTCGGCTTCAACCTTGGCACCGGCGGCCTTGGCATCCCACTCGGCGTAGATGTCGGCCGGGATTTCGAACGGGCCGTGGTTCCAGTTCAGGGCCTGGCGGGTCAGGGCGATTTCGTCGTTGCCCAGCGGGGCACCGTGGCAGTCTTCCt > 1:274309/1‑150 (MQ=255) aCTCGGCTTCAACCTTGGCACCGGCGGCCTTGGCATCCCACTCGGCGTAGATGTCGGCCGGGATTTCGAACGGGCCGTGGTTCCAGTTCAGGGCCTGGCGGGTCAGGGCGATTTCGTCGTTGCCCAGCGGGGCACCGTGGCAGTCTTCCt > 1:567228/1‑150 (MQ=255) ttCAACCTTGGCACCGGCGGCCTTGGCATCCCACTCGGCGTAGATGTCGGCCGGGATTTCGAACGGGCCGTGGTTCCAGTTCAGGGCCTGGCGGGTCAGGGCGATTTCGTCGTTGCCCCGCTGGGCaacga > 1:1182084/1‑127 (MQ=255) ttCAACCTTGGCACCGGCGGCCTTGGCATCCCACTCGGCGTAGATGTCGGCCGGGATTTCGAACGGGCCGTGGTTCCAGTTCAGGGCCTGGCGGGTCAGGGCGATTTCGTCGTTGCCCCGCTGGGCAACga < 2:1182084/131‑2 (MQ=255) aaCCTTGGCACCGGCGGCCTTGGCATCCCACTCGGCGTAGATGTCGGCCGGGATTTCGAACGGGCCGTGGTTCCAGTTCAGGGCCTGGCGGGTCAGGGCGATTTCGTCGTTGCCCAGCGGGGCACCGTGGCAGTCTTCCTTGCCCTGc > 2:179447/1‑148 (MQ=255) aaCCTTGGCACCGGCGGCCTTGGCATCCCACTCGGCGTAGATGTCGGCCGGGATTTCGAACGGGCCGTGGTTCCAGTTCAGGGCCTGGCGGGTCAGGGCGATTTCGTCGTTGCCCAGCGGGGCACCGTGGCAGTCTTCCTTGCCCTGc < 1:179447/148‑1 (MQ=255) ggCACCGGCGGCCTTGGCATCCCACTCGGCGTAGATGTCGGCCGGGATTTCGAACGGGCCGTGGTTCCAGTTCAGGGCCTGGCGGGTCAGGGCGATTTCGTCGTTGCCCAGCGGGGCACCGTGGCAGTCTTCCTTGCCCTGCTTGTTCgg < 2:274309/150‑1 (MQ=255) tGGCATCCCACTCGGCGTAGATGTCGGCCGGGATTTCGAACGGGCCGTGGTTCCAGTTCAGGGCCTGGCGGGTCAGTGCGATTTCGTCGTTGCCCAGCGGGGCACCGTGGCAGTCGTCCTTGCCCTGCTTGTTCGGCGaaccgaaaccga < 2:1071808/150‑1 (MQ=255) gCATCCCACTCGGCGTAGATGTCGGCCGGGATTTCGAACGGGCCGTGGTTCCAGTTCAGGGCCTGGCGGGTCAGGGCGATTTCGTCGTTGCCCAGCGGGGCACCGTGGCAGTCTTCCTTGCCCTGCTTGTTCGGCGAACCGAAACCGAtg > 1:311416/1‑150 (MQ=255) tCCCACTCGGCGTAGATGTCGGCCGGGATTTCGAACGGGCCGTGGTTCCAGTTCAGGGCCTGGCGGGTCAGGGCGATTTCGTCGTTGCCCAGCGGGGCACCGTGGCAGTCTTCCTTGCCCTGCTTGTTCGGCGAACCGAAACCGAtggtg < 2:311416/150‑1 (MQ=255) caaCTCGGCGTAGATGTCGGCCGGGATTTCGAACGGGCCGTGGTTCCAGTTCAGGGCCTGGCGGGTCAGGGCGATTTCGTCGTTGCCCAGCGGGGCACCGTGGCAGTCTTCCTTGCCCTGCTTGTTCGGCGAACCGAAACCGATggtggt > 1:814692/3‑150 (MQ=255) cACTCGGCGTAGATGTCGGCCGGGATTTCGAACGGGCCGTGGTTCCAGTTCAGGGCCTGGCGGGTCAGGGCGATTTCGTCGTTGCCCAGCGGGGCACCGTGGCAGTCTTCCTTGCCCTGCTTGTTCGGCGAACCGAAACCGATGGTGGTc > 2:1149638/1‑150 (MQ=255) tGTCGGCCGGGATTTCGAACGGGCCGTGGTTCCAGTTCAGGGCCTGGCGGGTCAGGGCGATTTCGTCGTTGCCCAGCGGGGCACCGTGGCAGTCTTCCTTGCCCTGCTTGTTCGGCGAACCGAAACCGATGGTGGTCTTGCAGCAGATCa < 1:960039/150‑1 (MQ=255) gCCGGGATTTCGAACGGGCCGTGGTTCCAGTTCAGGGCCTGGCGGGTCAGGGCGATTTCGTCGTTGCCCAGCGGGGCACCGTGGCAGTCTTCCTTGCCCTGCTTGTTCGGCGAACCGAAACCGATGGTGGTCTTgc > 2:342421/1‑136 (MQ=255) gCCGGGATTTCGAACGGGCCGTGGTTCCAGTTCAGGGCCTGGCGGGTCAGGGCGATTTCGTCGTTGCCCAGCGGGGCACCGTGGCAGTCTTCCTTGCCCTGCTTGTTCGGCGAACCGAAACCGATGGTGGTCTTgc < 1:342421/136‑1 (MQ=255) cGGGATTTCGAACGGGCCGTGGTTCCAGTTCAGGGCCTGGCGGGTCAGGGCGATTTCGTCGTTGCCCAGCGGGGCACCGTGGCAGTCTTCCTTGCCCTGCTTGTTCGGCGAACCGAAACCGATGGTGGTCTTGCAGCAGATCAGGGTCgg < 1:138965/150‑1 (MQ=255) gggATTTCGAACGGGCCGTGGTTCCAGTTCAGGGCCTGGCGGGTCAGGGCGATTTCGTCGTTGCCCAGCGGGGCACCGTGGCAGTCTTCCTTGCCCTGCTTGTTCGGCGAACCGAAACCGATGGTGGTCTTGCAGCAGATCAGGGTCggg < 2:455854/150‑1 (MQ=255) aTTTCGAACGGGCCGTGGTTCCAGTTCATGTCCTGGCGGGTCAGGGCGATTTCGTCGTTGCCCAGCGGGGCACCGTGGCAGTCTTCCTTGCCCTGCTTGTTCGGCGAACCGAAACCGATGGTGGTCTTGCAGCAGATCAGGGTCGGGCGa < 1:487518/150‑1 (MQ=255) ttCGAACGGGCCGTGGTTCCAGTTCAGGGCCTGGCGGGTCAGGGCGATTTCGTCGTTGCCCAGCGGGGCACCGTGGCAGTCTTCCTTGCCCTGCTTGTTCGGCGAACCGAAACCGATGGTGGTCTTGCAGCAGATCAGGGTCGGGCGATc < 1:1149638/150‑1 (MQ=255) ttCGAACGGGCCGTGGTTCCAGTTCAGGGCCTGGCGGGTCAGGGCGATTTCGTCGTTGCCCAGCGGGGCACCGTGGCAGTCTTCCTTGCCCTGCTTGTTCGGCGAACCGAAACCGATGGTGGTCTTGCAGCAGATCAGGGTCGGGCGATc > 1:355205/1‑150 (MQ=255) gCCGTGGTTCCAGTTCAGGGCCTGGCGGGTCAGGGCGATTTCGTCGTTGCCCAGCGGGGCACCGTGGCAGTCTTCCTTGCCCTGCTTGTTCGGCGAACCGAAACCGATGGTGGTCTTGCAGCAGATCAGGGTCGGGCGATCGCTCTTgcg > 1:234256/1‑150 (MQ=255) ccGTGGTTCCAGTTCAGGGCCTGGCGGGTCAGGGCGATTTCGTCGTTGCCCAGCGGGGCACCGTGGCAGTCTTCCTTGCCCTGCTTGTTCGGCGAACCGAAACCGATGGTGGTCTTGCAGCAGATCAGGGTCGGGCGATCGCTCTTgcgg < 2:355205/150‑1 (MQ=255) gTTCCAGTTCAGGGCCTGGCGGGTCAGGGCGATTTCGTCGTTGCCCAGCGGGGCACCGTGGCAGTCTTCCTTGCCCTGCTTGTTCGGCGAACCGAAACCGATGGTGGTCTTGCAGCAGATCAGGGTCGGGCGATCGCTCTTgcgg > 1:45908/1‑145 (MQ=255) gTTCCAGTTCAGGGCCTGGCGGGTCAGGGCGATTTCGTCGTTGCCCAGCGGGGCACCGTGGCAGTCTTCCTTGCCCTGCTTGTTCGGCGAACCGAAACCGATGGTGGTCTTGCAGCAGATCAGGGTCGGGCGATCGCTCTTgcgg < 2:45908/145‑1 (MQ=255) ttCCAGTTCAGGGCCTGGCGGGTCAGGGCGATTTCGTCGTTGCCCAGCGGGGCACCGTGGCAGTCTTCCTTGCCCTGCTTGTTCGGCGAACCGAAACCGATGGTGGTCTTGCAGCAGATCAGGGTCGGGCGATCGCTCTTGCGGGCGGtc > 2:516692/1‑150 (MQ=255) ttCCAGTTCAGGGCCTGGCGGGTCAGGGCGATTTCGTCGTTGCCCAGCGGGGCACCGTGGCAGTCTTCCTTGCCCTGCTTGTTCGGCGAACCGAAACCGATGGTGGTCTTGCAGCAGATCAGGGTCGGGCGATCGCTCTTGCGGGCGGtc > 1:950670/1‑150 (MQ=255) cAGTTCAGGGCCTGGCGGGTCAGGGCGATTTCGTCGTTGCCCAGCGGGGCACCGTGGCAGTCTTCCTTGCCCTGCTTGTTc < 2:987534/81‑1 (MQ=255) cAGTTCAGGGCCTGGCGGGTCAGGGCGATTTCGTCGTTGCCCAGCGGGGCACCGTGGCAGTCTTCCTTGCCCTGCTTGTTc > 1:987534/1‑81 (MQ=255) aGTTCAGGGCCTGGCGGGTCAGGGCGATTTCGTCGTTGCCCAGCGGGGCACCGTGGCAGTCTTCCTTGCCCTGCTTGTTCGGCGAACCGAAACCGATGGTGGTCTTGCAGCAGATCAGGGTCGGGCGATCGCTCTTGCGGGCGGTCTCGa > 2:390162/1‑150 (MQ=255) aGTTCAGGGCCTGGCGGGTCAGGGCGATTTCGTCGTTGCCCAGCGGGGCACCGTGGCAGTCTTCCTTGCCCTGCTTGTTCGGCGAACCGAAACCGATGGTGGTCTTGCAGCAGATCAGGGTCGGGCGATCGCTCTTGCGGGCGGTCTCGa < 2:950670/150‑1 (MQ=255) gTTCAGGGCCTGGGGGGTAAGGGAGGTTTAGTCGTTGCCGAGGGGGGCAGCGTGGAAGTCTGCATTGGCGTGATTGTTGGGCGAACCGAAACCGATGGTGGTCTTGCAGCAGATCAGGGAAGGGCGAAGGGTCTTGAGGGCGGTGTCGAt > 2:6839/1‑150 (MQ=255) ttCAGGGCCTGGCGGGTCAGGGCGATTTCGTCGTTGCCCAGCGGGGCGAAATTTTAGTCTTCCTTGCCCTGCTTGTTCGGCGAACCGAAACCGATGGTGGTCTTGCAGCAGATCAGGGTCGGGCGATCGCTCTTGCGGGCGGTCTCGATg < 2:338134/150‑1 (MQ=255) gCCTGGCGGGTCAGGGCGATTTCGTCGTTGCCCAGCGGGGCACCGTGGCAGTCTTCCTTGCCCTGCTTGTTCGGCGAACCGAAACCGATGGTGGTCTTGCAGCAGATCAGGGTCGGGCGATCGCTCTTGCGGGCGGTCTCGATGGCCATc < 2:567228/150‑1 (MQ=255) gCGGGTCAGGGCGATTTCGTCGTTGCCCAGCGGGGCACCGTGGCAGTCTTCCTTGCCCTGc > 1:235684/1‑61 (MQ=255) gCGGGTCAGGGCGATTTCGTCGTTGCCCAGCGGGGCACCGTGGCAGTCTTCCTTGCCCTGc < 2:235684/61‑1 (MQ=255) gggTCAGGGCGATTTCGTCGTTGCCCAGCGGGGCACCGTGGCAGTCTTCCTTGCCCTGCTTGTTCGGCGAACCGAAACCGATGGTGGTCTTGCAGCAGATCAGGGTCGGGCGATCGCTCTTGCGGGCGGTCTCGATGGCCATCTTGAttt > 2:318887/1‑150 (MQ=255) tCAGGGCGATTTCGTCGTTGCCCAGCGGGGCACCGTGGCAGTCTTCCTTGCCCTGCTTGTTCGGCGAACCGAAACCGAtgg < 1:1202181/81‑1 (MQ=255) tCAGGGCGATTTCGTCGTTGCCCAGCGGGGCACCGTGGCAGTCTTCCTTGCCCTGCTTGTTCGGCGAACCGAAACCGAtgg > 2:1202181/1‑81 (MQ=255) tCAGGGCGATTTCGTCGTTGCCCAGCGGGGCACCGTGGCAGTCTTCCTTGCCCTGCTTGTTCGGCGAACCGAAACCGATGGTGGTCTTGCAGCAGATCAGGGTCGGGCGATCGCTCTTGCGGGCGGTCTCGATg < 2:718722/134‑1 (MQ=255) tCAGGGCGATTTCGTCGTTGCCCAGCGGGGCACCGTGGCAGTCTTCCTTGCCCTGCTTGTTCGGCGAACCGAAACCGATGGTGGTCTTGCAGCAGATCAGGGTCGGGCGATCGCTCTTGCGGGCGGTCTCGATg > 1:718722/1‑134 (MQ=255) ggCGATTTCGTCGTTGCCCAGCGGGGCACCGTGGCAGTCTTCCTTGCCCTGCTTGTTCGGCGAACCGAAACCGATGGTGGTCTTGCAGCAGATCAGGGTCGGGc > 1:975115/1‑104 (MQ=255) ggCGATTTCGTCGTTGCCCAGCGGGGCACCGTGGCAGTCTTCCTTGCCCTGCTTGTTCGGCGAACCGAAACCGATGGTGGTCTTGCAGCAGATCAGGGTCGGGc < 2:975115/104‑1 (MQ=255) ccacggtGCCCCGCTGGGCACCGTGGCAGTCTTCCTTGCCCTGCTTGTTCGGCGAACCGAAACCGATGGTGGTCTTGCAGCAGATCAGGGTCGGGCGATCGCTCTTGCGGGCGGTCTCGATGGCCATCTTGATTTCTTCGGCATCGTGGc > 1:1057285/7‑150 (MQ=255) ccacggtGCCCCGCTGGGCACCGTGGCAGTCTTCCTTGCCCTGCTTGTTCGGCGAACCGAAACCGATGGTGGTCTTGCAGCAGATCAGGGTCGGGCGATCGCTCTTGCGGGCGGTCTCGATGGCCATCTTGATTTCTTCGGCATCGTGGc < 2:1057285/144‑1 (MQ=255) gtcgtTGCCCAGCGGGGCACCGTGGCAGTCTTCCTTGCCCTGCTTGTTCGGCGAACCGAAACCGATGGTGGTCTTGCAGCAGATCAGGGTCGGGAGATCGCTCTTGCGGGCGGTCTCGATGGCCATCTTGa < 2:229071/131‑1 (MQ=255) gtcgtTGCCCAGCGGGGCACCGTGGCAGTCTTCCTTGCCCTGCTTGTTCGGCGAACCGAAACCGATGGTGGTCTTGCAGCAGATCAGGGTCGGGAGATCGCTCTTGCGGGCGGTCTCGATGGCCATCTTGa > 1:229071/1‑131 (MQ=255) cgtTGCCCAGCGGGGCACCGTGGCAGTCTTCCTTGCCCTGCTTGTTCGGCGAACCGAAACCGATGGTGGTCTTGCAGCAGATCAGGGTCGGGCGATCGCTCTTGCGGGCGGTCTCGATGGCCATCTTGATTTCTTCGGCATCGTGGCCGt < 2:814692/150‑1 (MQ=255) | GCGTCGAAGCGCTGGTTCCACTCGGCTTCAACCTTGGCACCGGCGGCCTTGGCATCCCACTCGGCGTAGATGTCGGCCGGGATTTCGAACGGGCCGTGGTTCCAGTTCAGGGCCTGGCGGGTCAGGGCGATTTCGTCGTTGCCCAGCGGGGCACCGTGGCAGTCTTCCTTGCCCTGCTTGTTCGGCGAACCGAAACCGATGGTGGTCTTGCAGCAGATCAGGGTCGGGCGATCGCTCTTGCGGGCGGTCTCGATGGCCATCTTGATTTCTTCGGCATCGTGGCCGT > NC_002947/5656811‑5657096 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |