Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,755,185 | C→G | 9.5% | I81M (ATC→ATG) | glnG → | two‑component system DNA‑binding response regulator GlnL/GlnG |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,755,185 | 0 | C | G | 9.5% | 115.2 / 3.0 | 39 | I81M (ATC→ATG) | glnG | two‑component system DNA‑binding response regulator GlnL/GlnG |
Reads supporting (aligned to +/- strand): ref base C (17/18); new base G (2/2); total (19/20) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.71e-01 |
AGAGCTTCGACAGCGCAGACGGTGTCATGGGGCGCCTGGCACGTCAGCAACCCGACGTGATCATTTCCGACATTCGCATGCCTGGCACCAGCGGCCTCGACCTGCTGGCGCAGATCCGCGAGCAGCACCCGCGCCTGCCGGTCATCATCATGACCGCCCACTCCGACCTGGACAGCGCCGTGGCCTCGTACCAAGGCGGTGCCTTCGAGTACCTGCCCAAGCCATTCGACGTCGACGAAGCGGTATCGCTGGTCAAGCGCGCCAACCAGCACGCCCAGGAGCAGCAAGGCCTGGATGT > NC_002947/5755037‑5755334 | agagCTTCGACAGCGCAGACGGTGTCATGGGGCGCCTGGCACGTCAGCAACCCGACGTGATCATTTCCGACATTCGCATGCCTGGCACCAGCGGCCTCGACCTGCTGGCGCAGATCCGCGAGCAGCACCCGCGCCTGCCGGtcatcatca < 2:1105426/150‑1 (MQ=255) gagCTTCGACAGCGCAGACGGTGTCATGGGGCGCCTGGCACGTCAGCAACCCGACGTGATCATTTCCGACATTCGCATGCCTGGTACCAGCGGCCTCGACCTGCTGGCGCAGATCCGCGAGCAGCACCCGCGCCTGCCGGTcatcatcat < 2:867536/150‑1 (MQ=255) aCAGCGCAGACGGTGTCATGGGGCGCCTGGCACGTCAGCAACCCGACGTGATCATTTCCGACATTCGCATGCCTGGCACCAGCGGCCTCGACCTGCTGGCGCAGATCCGCGAGCAGCACCCGCGCCTGCCGGTCATCATCATAACCGccc > 2:851092/1‑150 (MQ=255) cAGCGCAGACGGTGTCATGGGGCGCCTGGCACGTCAGCAACCCGACGTGATCATTTCCGACATTCGCATGCCTGGCACCAGCGGCCTCGACCTGCTGGCGCAGATCCGCGAGCAGCACCCGCGCCTGCCGGTCATCATCATGACCGCCCa < 1:718758/150‑1 (MQ=255) cgcAGACGGTGTCATGGGGCGCCTGGCACGTCAGCAACCCGACGTGATCATTTCCGACATTCGCATGCCTGGCACCAGCGGCCTCGACCTGCTGGCGCAGATCCGCGAGCAGCACCCGCGCCTGCCGGTCATCATCATGACCGCCCACTc > 1:182817/1‑150 (MQ=255) ggTGTCATGGGGCGCCTGGCACGTCAGCAACCCGACGTGATCATTTCCGACATTCGCATGCCTGGCACCAGCGGCCTCGACCTGCTGGCGCAGATCCGCGAGCAGCACCCGCGCCTGCCGGTCATGATGATGACCggcag > 2:584563/1‑136 (MQ=255) ggTGTCATGGGGCGCCTGGCACGTCAGCAACCCGACGTGATCATTTCCGACATTCGCATGCCTGGCACCAGCGGCCTCGACCTGCTGGCGCAGATCCGCGAGCAGCACCCGCGCCTGCCGGTCATGATGATGACCggcag < 1:584563/140‑5 (MQ=255) tgtCATGGGGCGCCTGGCACGTCAGCAACCCGACGTGATCATTTCCGACATTCGCATGCCTGGCACCAGCGGCCTCGACCTGCTGGCGCAGATCCGCGAGCAGCACCCGCGCCTGCCGGTCATCATCATGACCGCCCACTCCGACCTGGa < 2:166469/150‑1 (MQ=255) gggCGCCTGGCACGTCAGCAACCCGACGTGATCATTTCCGACATTCGCATGCCTGGCACCAGCGGCCTCGACCTGCTGGCGCAGATCCGCGAGCAGCACCCGCGCCTGCCGGTCATCATCATGACCGcc > 2:721216/1‑129 (MQ=255) gggCGCCTGGCACGTCAGCAACCCGACGTGATCATTTCCGACATTCGCATGCCTGGCACCAGCGGCCTCGACCTGCTGGCGCAGATCCGCGAGCAGCACCCGCGCCTGCCGGTCATCATCATGACCGcc < 1:721216/129‑1 (MQ=255) gcgcCTGGCACGTCAGCAACCCGACGTGATCATTTCCGACATTCGCATGCCTGGCACCAGCGGCCTCGACCTGCTGGCGCAGATCCGCGAGCAGCACCCGCGCCTGCCGGTCATCATCATGACCGCCCACTCCGACCTGGACAGCGCCGt < 2:757520/150‑1 (MQ=255) gcCTGGCACGTCAGCAACCCGACGTGATCATTTCCGACATTCGCATGCCTGGCACCAGCGGCCTCGACCTGCTGGCGCAGATCCGCGAGCAGCACCCGCGCCTGCCGGTCATCATCATAACCGCCCACTCCGACCTGGACAGCGCCGTgg < 1:851092/150‑1 (MQ=255) ccGACGTGATCATTTCCGACATTCGCATTCCTGGCACCAGCGGCCTCGACCTGCTGGCGCAGATCCGCGAGCAGCACCCGCGCCTGCCGGTCATCATCATGACAGCCCACTCCGACCTGGACAGCGCCGTGGCCTCGTACCAAGGCGGTg > 2:177798/1‑150 (MQ=255) gACGTGATCATTTCCGACATTCGCATGCCTGGCACCAGCGGCCTCGACCTGCTGGCGCAGATCCGCGAGCAGCACCCGCGCCTGCCGGTCATGATGATGACCggca < 2:281696/106‑4 (MQ=255) gACGTGATCATTTCCGACATTCGCATGCCTGGCACCAGCGGCCTCGACCTGCTGGCGCAGATCCGCGAGCAGCACCCGCGCCTGCCGGTCATGATGATGACCggca > 1:281696/1‑103 (MQ=255) gATCATTTCCGACATTCGCATGCCTGGCACCAGCGGCCTCGACCTGCTGGCGCAGATCCGGGAGCAGCACCCGCGCCTGCCGGACATCATCACGACCGCACACTCCGACATGCACAGCGCCGGCGCCCCTTCCCAAGACGGAGCCTTCGa > 2:316577/1‑150 (MQ=255) tCATTTCCGACATTCGCATGCCTGGCACCAGCGGCCTCGACCTGCTGGCGCAGATCCGCGAGCAGCACCCGCGCCTGCCGGTCATCATCATGACCGCCCACTCCGACCTGGACAGCGCCGTGGCCTCGTACCAAGGCGGTGCCTTCGAGt > 2:730778/1‑150 (MQ=255) aTTTCCGACATTCGCATGCCTGGCACCAGCGGCCTCGACCTGCTGGCGCAGATCCGCGAGCAGCACCCGCGCCTGCCGGTCATCATCATGACCGCCCACTCCGACCTGGACAGCGCCGTGGCCTCGTACCAAGGCGGTGCCTTCGAGTAc < 1:798476/150‑1 (MQ=255) ccGACATTCGCATGCCTGGCACCAGCGGCCTCGACCTGCTTGCGCAGATCCGCGAGCAGCACCCGCGCCTGCCGGTCATCATCATGACCGCCCACTCCGACCTGGACAGCGCCGTGGCCTCGTACCAAGGCGGTGCCTTCGAGTACCTGc < 1:316577/150‑1 (MQ=255) gACATTCGCATGCCTGGCACCAGCGGCCTCGACCTGCTGGCGCAGATCCGCGAGCAGCACCCGCGCCTGCCGGTCATCATCATGACCGCCCACTCCGACCTg > 2:249785/1‑102 (MQ=255) gACATTCGCATGCCTGGCACCAGCGGCCTCGACCTGCTGGCGCAGATCCGCGAGCAGCACCCGCGCCTGCCGGTCATCATCATGACCGCCCACTCCGACCTg < 1:249785/102‑1 (MQ=255) aCATTCGCATGCCTGGCACCAGCGGCCTCGACCTGCTGGCGCAGATCCGCGAGCAGCACCCGCGCCTGCCGGTCATCATCATGACCGCCCACTCCGACCTGGACAGCGCCGTGGCCTCGTACCAAGGCGGTGCCTTCGAGTACCTGCCCa > 2:1146112/1‑150 (MQ=255) aTTCGCATGCCTGGCACCAGCGGCCTCGACCTGCTGGCGCAGATCCGCGAGCAGCACCCGCGCCTGCCGGTCATCATCATGACCGCCCACTCCGACCTGGACAGCGCCGTGGCCTCGTACCAAGGCGGTGCCTTCGAGTACCTGCCCAAg < 2:117451/150‑1 (MQ=255) cATGCCTGGCACCAGCGGCCTCGACTTGCTGGCGCAGATCCGCGAGCAGCACCCGCGCCTGCCGGTCATCATCATGACCGCCCACTCCGACCTGGACAGCGCCGTGGCCTCGTACCAAGGCGGTGCCTTCGAGTACCTGCCCAAGCCAtt < 1:678063/150‑1 (MQ=255) ggCACCAGCGGCCTCGACCGGCTGGCGCAGATCCGCGAGCAGCACCCGCGCCTGCCGGTCATCATCATGACCGCCCACTCCGACCTGGACAGCGCCGTGGCCTCGTACCAAGGCGGTGCCTTCGAGTACCTGCCCAAGCCATtcgacgtc < 1:143197/150‑1 (MQ=255) gCCTCGACCTGCTGGCGCAGATCCGCGAGCAGCACCCGCGCCTGCCGGTCATCATCATGACCGCCCACTCCGACCTGGACAGCGCCGTGGCCTCGTACCAAGGCGGTGCCTTCGAGTACCTGCCCAAGCCATTCGACGTCGACGAAGCgg > 1:420729/1‑150 (MQ=255) tgctgGCGCAGATCCGCGAGCAGCACCCGCGCCTGCCGGTCATCATCATGACCGCCCACTCCGACCTGGACAGCGCCGTGGCCTCGTACCAAGGCGGTGCCTTCGAGTACCTGCCCAAGCCATTCGACGTCGACGAAGCGGTATCGCTgg < 2:182817/150‑1 (MQ=255) ggCGCAGATCCGCGAGCAGCACCCGCGCCTGCCGGTCATCATCATGACCGCCCACTCCGACCTGGACAGCGCCGTGGCCTCGTACCAAGGCGGTGCCTTCGAGTACCTGCCCAAGCCATTCGACGTCGACGAAGCGGTATCGCTGGTCaa < 1:375870/150‑1 (MQ=255) aGATCCGCGAGCAGCACCCGCGCCTGCCGGTCATCATCATGACCGCCCACTCCGACCTGGACAGCGCCGTGGCCTCGTACCAAGGCGGTGCCTTCGAGTACCTGCCCAAGCCAt > 2:354185/1‑114 (MQ=255) aGATCCGCGAGCAGCACCCGCGCCTGCCGGTCATCATCATGACCGCCCACTCCGACCTGGACAGCGCCGTGGCCTCGTACCAAGGCGGTGCCTTCGAGTACCTGCCCAAGCCAt < 1:354185/114‑1 (MQ=255) cgcgAGCAGCACCCGCGCCTGCCGGTCATCATCATGACCGCCCACTCCGACCTGGACAGCGCCGTGGCCTCGTACCAAGGCGGTGCCTTCGAGTACCTGCCCAAGCCATTCGACGTCGACGAAGCGGTATCGCTGGTCAAGCGCGCCAAc > 2:193842/1‑150 (MQ=255) agcagcACCCGCGCCTGCCGGTCATCATCATGACCGCCCACTCCGACCTGGACAGCGCCGTGGCCTCGTACCAAGGCGGTGCCTTCGAGTACCTGCCCAAGCCATTCGACGTCGACGAAGCGGTATCGCTGGTCAAGCGCGCCAACCAGc < 2:420729/150‑1 (MQ=255) agcaCCCGCGCCTGCCGGTCATCATCATGACCGCCCACTCCGACCTGGACAGCGCCGTGGCCTCGTACCAAGGCGGTGCCTTCGAGTACCTGCCCAAGCCATTCGACGTCGACGAAGCGGTATCGCTGGTCAAGCGCGCCAACCAGCACg > 2:631317/1‑150 (MQ=255) agcaCCCGCGCCTGCCAGTCATCATCATGACCGCCCACTCCGACCTGGACAGCGCCGTGGCCTCGTACCAAGGCGGTGCCTTCGAGTACCTGCCCAAGCCATTCGACGTCGACGAAGCGGTATCGCTGGTCAAGCGCGCCAACCAGCACg > 2:631313/1‑150 (MQ=255) ccGTGCCTGCCGGTCATCATCATGACCGCCCACTCCGACCTGGACAGCGCCGTGGCCTCGTACCAAGGCGGTGCCTTCGAGTACCTGCCCAAGCCATTCGACGTCGACGAAGCGGTATCGc < 2:306346/121‑1 (MQ=255) ccGCGCCTGCCGGTCATCATCATGACCGCCCACTCCGACCTGGACAGCGCCGTGGCCTCGTACCAAGGCGGTGCCTTCGAGTACCTGCCCAAGCCATTCGACGTCGACGAAGCGGTATCGc > 1:306346/1‑121 (MQ=255) ccGCGCCTGCCGGTCATCATCATGACCGCCCACTCCGACCTGGACAGCGCCGTGGCCTCGTACCAAGGCGGTGCCTTCGAGTACCTGCCCAAGCCATTCGACGTCGACGAAGCGGTATCGCTg > 2:999463/1‑123 (MQ=255) ccGCGCCTGCCGGTCATCATCATGACCGCCCACTCCGACCTGGACAGCGCCGTGGCCTCGTACCAAGGCGGTGCCTTCGAGTACCTGCCCAAGCCATTCGACGTCGACGAAGCGGTATCGCTg < 1:999463/123‑1 (MQ=255) tGCCGGTCATCATCATGACCGCCCACTCCGACCTGGACAGCGCCGTGGCCTCGTACCAAGGCGGTGCCTTCGAGTACCTGCCCAAGCCATTCGACGTCGACGAAGCGGTATCGCTGGTCAAGCGCGCCAACCAGCACGCCCAGGagcagc > 1:686192/1‑150 (MQ=255) gTCATCATCATGACCGCCCACTCCGACCTGGACAGCGCCGTGGCCTCGTACCAAGGCGGt > 1:691884/1‑60 (MQ=255) gTCATCATCATGACCGCCCACTCCGACCTGGACAGCGCCGTGGCCTCGTACCAAGGCGGt < 2:691884/60‑1 (MQ=255) catcatcatGACCGCCCACTCCGACCTGGACAGCGCCGTGGCCTCGTACCAAGGCGGTGCCTTCGAGTACCTGCCCAAGCCATTCGACGTCGACGAAGCGGTATCGCTGGTCAAGCGCGCCAACCAGCACGCCCAGGAGCAGCAAGGCCt < 1:1161134/150‑1 (MQ=255) atcatcatGACCGCCCACTCCGACCTGGACAGCGCCGTGGCCTCGTACCAAGGCGGTGCCTTCGAGTACCTGCCCAAGCCATtcgac > 2:397332/1‑87 (MQ=255) atcatcatGACCGCCCACTCCGACCTGGACAGCGCCGTGGCCTCGTACCAAGGCGGTGCCTTCGAGTACCTGCCCAAGCCATtcgac < 1:397332/87‑1 (MQ=255) atcatcatGACCGCCCACTCCGACCTGGACAGCGCCGTGGCCTCGTACCAAGGCGGTGCCTTCGAGTACCTGCCCAAGCCATTCGACGTCGACGAAGCGGTATCGCTGGTCAAGCGCGCCAACCAGCACGCCCAGGAGCAGCAAGGCCTg < 1:631317/150‑1 (MQ=255) atcatcatGACCGCCCACTCCGACCTGGACAGCGCCGTGGCCTCGTACCAAGGCGGTGCCTTCGAGTACCTGCCCAAGCCATTCGACGTCGACGAAGCGGTATCGCTGGTCAAGCGCGCCAACCAGCACGCCCAGGAGCAGCAAGGCCTg < 1:631313/150‑1 (MQ=255) tcatGACCGCCCACTCCGACCTGGACAGCGCCGTGGCCTCGTATCAAGGCGGTGCCTTCGAGTACCTGCCCAAGCCATtcgacgtc > 2:1127496/1‑86 (MQ=255) tcatGACCGCCCACTCCGACCTGGACAGCGCCGTGGCCTCGTATCAAGGCGGTGCCTTCGAGTACCTGCCCAAGCCATtcgacgtc < 1:1127496/86‑1 (MQ=255) catGACCGCCCACTCCGACCTGGACAGCGCCGTGGCCTCGTACCAAGGCGGTGCCTTCGAGTACCTGCCCAAGCCATTCGACGTCGACGAAGCGGTATCGCTGGTCAAGCGCGCCAACCAGCACGCCCAGGAGCAGCAAGGCCTGGAtgt < 1:1093284/150‑1 (MQ=255) | AGAGCTTCGACAGCGCAGACGGTGTCATGGGGCGCCTGGCACGTCAGCAACCCGACGTGATCATTTCCGACATTCGCATGCCTGGCACCAGCGGCCTCGACCTGCTGGCGCAGATCCGCGAGCAGCACCCGCGCCTGCCGGTCATCATCATGACCGCCCACTCCGACCTGGACAGCGCCGTGGCCTCGTACCAAGGCGGTGCCTTCGAGTACCTGCCCAAGCCATTCGACGTCGACGAAGCGGTATCGCTGGTCAAGCGCGCCAACCAGCACGCCCAGGAGCAGCAAGGCCTGGATGT > NC_002947/5755037‑5755334 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |