| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,822,935 | G→A | 8.2% | L136L (CTG→CTA) | rdgB → | dITP/XTP pyrophosphatase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,822,935 | 0 | G | A | 8.2% | 136.6 / 3.3 | 49 | L136L (CTG→CTA) | rdgB | dITP/XTP pyrophosphatase |
| Reads supporting (aligned to +/- strand): ref base G (23/22); new base A (2/2); total (25/24) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.93e-01 | |||||||||||
TCGGCGCGCTATGCCGATGGCAAAGGTGACGCGGCAAACAACGCCAAGCTGCTCGAAGCCTTGAAAGACGTGCCTGAAGCTGAGCGCAGTGCACAGTTCGTCTGCGTTCTGGCGCTGGTGCGCCACGCCGACGACCCGTTGCCGATCCTGTGCGAAGGCCTGTGGCACGGGCGCATCCTGTTCGAGGCCAGCGGCGACCAGGGCTTTGGCTACGATCCGCTGTTCTGGGTACCGGAGCGCAACTGCTCCAGCGCCGATCTAGCCCCAGCAGACAAGAACCAGCTCAGCCACCGC > NC_002947/5822786‑5823079 | tCGGCGCGCTATGCCGATGGCAAAGGTGACGCGGCAAACAACGCCAAGCTGCTCGAAGCCTTGAAAGACGTGCCTGAAGCTGAGCGCAGTGCACAGTTCGTCTGCGTTCTGGCGCTGGTGCGCCACGCCGACGACCCGTTGCCGATCCtg > 1:1125916/1‑150 (MQ=255) gcTATGCCGATGGCAAAGGTGACGCGGCAAACAACGCCAAGCTGCTCGAAGCCTTGAAAGACGTGCCTGAAGCTGAGCGCAGTGCACAGTTCGTCTGCGTTCTGGCGCTGGTGCGCCACGCCGACGACCCGTTGCCGATCCTGTGCGAAg < 1:162144/150‑1 (MQ=255) tATGCCGATGGCAAAGGTGACGCGGCAAACAACGCCAAGCTGCTCGAAGCCTTGAAAGACGTGCCTGAAGCTGAGCGCAGTGCACAGTTCGTCTGCGTTCTGGCGCTGGTGCGCCACGCCGACGACCCGTTGCCGATCCTGTGCGAAGGc < 1:13794/150‑1 (MQ=255) tATGCCGATGGCAAAGGTGACGCGGCAAACAACGCCAAGCTGCTCGAAGCCTTGAAAGACGTGCCTGAAGCTGAGCGCAGTGCACAGTTCGTCTGCGTTCTGGCGCTGGTGCGCCACGCCGACGACCCGTTGCCGATCCTGTGCGAAGGc < 1:440792/150‑1 (MQ=255) ccGATGGCAAAGGTGACGCGGCAAACAACGCCAAGCTGCTCGAAGCCTTGAAAGACGTGCCTGAAGCTGAGCGCAGTGCACAGTTCGTCTGCGTTCTGGCGCTGGTGCGCCACGCCGACGACCCGTTGCCGATCCTGTGCGAAGGCCtgt > 1:1074610/1‑150 (MQ=255) cAAAGGTGACGCGGCAAACAACGCCAAGCTGCTCGAAGCCTTGAAAGACGTGCCTGAAGCTGAGCGCAGTGCACAGTTCGTCTGCGTTCTGGCGCTGGTGCGCCACGCCGACGACCCGTTGCCGATCCTGTGCGAAGGCCTGTGGCACgg < 1:294677/150‑1 (MQ=255) aaaGGTGACGCGGCAAACAACGCCAAGCTGCTCGAAGCCTTGAAAGACGTGCCTGAAGCTGAGCGCAGTGCACAGTTCGTCTGCGTTCTGGCGCTGGTGCGCCACGCCGACGACCCGTTGCCGATCCTGTGCGAAGGCCTGTGGCACggg > 2:948515/1‑150 (MQ=255) gACGCGGCAAACAACGCCAAGCTGCTCGAAGCCTTGAAAGACGTGCCTGAAGCTGAGCGCAGTGCACAGTTCGTCTGCGTTCTGGCGCTGGTGCGCCACGCCGACGACCCGTTGCCGATCCTGTGCGAAGGCCTGTGGCACGGGCGCATc < 2:1074610/150‑1 (MQ=255) ggCAAACAACGCCAAGCTGCTCGAAGCCTTGAAAGACGTGCCTGAAGCTGAGCGCAGTGCACAGTTCGTCTGCGTTCTGGCGCTGGTGCGCCACGCCGACGACCCGTTGCCGATCCTGTGCGAAGGCCTGTGTCACGGGCGCATCCTGtt < 2:618354/150‑1 (MQ=255) gCAAACAACGCCAAGCTGCTCGAAGCCTTGAAAGACGTGCCTGAAGCTGAGCGCAGTGCACAGTTCGTCTGCGTTCTGGCGCTGGTGCGCCACGCCGACGACCCGTTGCCGATCCTGTGCGAAGGCCTGTGGCACGGGCGCATCCTGtt > 2:1099684/1‑149 (MQ=255) gCAAACAACGCCAAGCTGCTCGAAGCCTTGAAAGACGTGCCTGAAGCTGAGCGCAGTGCACAGTTCGTCTGCGTTCTGGCGCTGGTGCGCCACGCCGACGACCCGTTGCCGATCCTGTGCGAAGGCCTGTGGCACGGGCGCATCCTGtt < 1:1099684/149‑1 (MQ=255) gCAAACAACGCCAAGCTGCTCGAAGCCTTGAAAGACGTGCCTGAAGCTGAGCGCAGTGCACAGTTCGTCTGCGTTCTGGCGCTGGTGCGCCACGCCGACGACCCGTTGCCGATCCTATGCGAAGGCCTGTGGCACGGGCGCATCCTGTTc > 2:992836/1‑150 (MQ=255) gCAAACAACGCCAAGCTGCTCGAAGCCTTGAAAGACGTGCCTGAAGCTGAGCGCAGTGCACAGTTCGTCTGCGTTCTGGCGCTGGTGCGCCACGCCGACGACCCGTTGCCGATCCTATGCGAAGGCCTGTGGCACGGGCGCATCCTGTTc > 2:392293/1‑150 (MQ=255) aacaacGCCAAGCTGCTCGAAGCCTTGAAAGACGTGCCTGAAGCTGAGCGCAGTGCACAGTTCGTCTGCGTTCTGGCGCTGGTGCGCCACGCCGACGACCCGTTGCCGATCCTATGCGAAGGCCTGTGGCACGGGCGCATCCTGTTCGAg < 1:392293/150‑1 (MQ=255) aacaacGCCAAGCTGCTCGAAGCCTTGAAAGACGTGCCTGAAGCTGAGCGCAGTGCACAGTTCGTCTGCGTTCTGGCGCTGGTGCGCCACGCCGACGACCCGTTGCCGATCCTATGCGAAGGCCTGTGGCACGGGCGCATCCTGTTCGAg < 1:992836/150‑1 (MQ=255) caacGCCAAGCTGCTCGAAGCCTTGAAAGACGTGCCTGAAGCTGAGCGCAGTGCACAGTTCGTCTGCGTTCTGGCGCTGGTGCGCCACGCCGACGACCCGTTGCCGATCCTGTGCGAAGGCCTGTgg > 1:158108/1‑127 (MQ=255) caacGCCAAGCTGCTCGAAGCCTTGAAAGACGTGCCTGAAGCTGAGCGCAGTGCACAGTTCGTCTGCGTTCTGGCGCTGGTGCGCCACGCCGACGACCCGTTGCCGATCCTGTGCGAAGGCCTGTgg < 2:158108/127‑1 (MQ=255) aacGCCAAGCTGCTCGAAGCCTTGAAAGACGTGCCTGAAGCTGAGCGCAGTGCACAGTTCGTCTGCGTTCTGGCGCTGGTGCGCCACGCCGACGACCCGTTGCCGATCCTGTGCGAAGGCCTGTGGCACGGGCGCATCCTGTTCGAGGcc > 1:160839/1‑150 (MQ=255) gCCAAGCTGCTCGAAGCCTTGAAAGACGTGCCTGAAGCTGAGCGCAGTGCACAGTTCGTCTGCGTTCTGGCGCTGGTGCGCCACGCCGACGACCCGTTGCCGATCCTGTGCGAAGGCCTGTGGCACGGgc > 1:205128/1‑130 (MQ=255) gCCAAGCTGCTCGAAGCCTTGAAAGACGTGCCTGAAGCTGAGCGCAGTGCACAGTTCGTCTGCGTTCTGGCGCTGGTGCGCCACGCCGACGACCCGTTGCCGATCCTGTGCGAAGGCCTGTGGCACGGgc < 2:205128/130‑1 (MQ=255) ccAAGCTGCTCGAAGCCTTGAAAGACGTGCCTGAAGCTGAGCGCAGTGCACAGTTCGTCTGCGTTCTGGCGCTGGTGCGCCACGCCGACGACCCGTTGCCGATCCTGTGCGAAGGCCTGTGGCACGGGCGCATCCTGTTCGAGGCCAgcg < 2:120933/150‑1 (MQ=255) tCGAAGCCTTGAAAGACGTGCCTGAAGCTGAGCGCAGTGCACAGTTCGTCTGCGTTCTGGCGCTGGTGCGCCACGCCGACGACCCGTTGCCGATCCTGTGCGaa > 1:193461/1‑104 (MQ=255) tCGAAGCCTTGAAAGACGTGCCTGAAGCTGAGCGCAGTGCACAGTTCGTCTGCGTTCTGGCGCTGGTGCGCCACGCCGACGACCCGTTGCCGATCCTGTGCGaa < 2:193461/104‑1 (MQ=255) cGAAGCCTTGAAAGACGTGCCTGAAGCTGAGCGCAGTGCACAGTTCGTCTGCGTTCTGGCGCTGGTGCGCCACGCCGACGACCCGTTGCCGATCCTGTGCGAAGGCCTGTGGCACGGGCGCATCCTGTTCGAGGCCAGCGGCGACCAggg < 2:1125916/150‑1 (MQ=255) gAAGCCTTGAAAGACGTGCCTGAAGCTGAGCGCAGTGCACAGTTCGTCTGCGTTCTGGCGCTGGTGCGCCACGCCGACGACCCGTTGCCGATCCTGTGCGAAGGCCTGTGGCACGGGCGCATCCTGTTCGAGGCCAGCGGCGACCAGGGc < 2:607653/150‑1 (MQ=255) cTGAAGCTGAGCGCAGTGCACAGTTCGTCTGCGTTCTGGCGCTGGTGCGCCACGCCGACGACCCGTTGCCGATCCTGTGCGAAg < 1:789573/84‑1 (MQ=255) cTGAAGCTGAGCGCAGTGCACAGTTCGTCTGCGTTCTGGCGCTGGTGCGCCACGCCGACGACCCGTTGCCGATCCTGTGCGAAg > 2:789573/1‑84 (MQ=255) cTGAGCGCAGTGCACAGTTCGTCTGCGTTCTGGCGCTGGTGCGCCACGCCGACGACCCGTTGCCGATCCTGTGCGAAGGCCTGTGGCACGGGCGCATCCTGTTCGAGGCCAGCGGCGACCAGGGCTTTGGCTACGATCCGCTGTTCTggg > 2:996432/1‑150 (MQ=255) cgcAGTGCACAGTTCGTCTGCGTTCTGGCGCTGGTGCGCCACGCCGACGACCCGTTGCCGATCCTGTGCGAAGGCCTGTGGCACGGGCGCATCCTGTTCGAGGCCAGCGGCGACCAGGGCTTTGGCTACGATCCGCTGTTCTGGGTACCg < 2:932867/150‑1 (MQ=255) tCTGCGTTCTGGCGCTGGTGCGCCACGCCGACGACCCGTTGCCGATCCTGTGCGAAGGCCTGTGGCACGGGCGCATCCTGTTCGAGGCCAGCGGCGACCAGGGCTTTGGCTACGAt < 2:90137/116‑1 (MQ=255) tCTGCGTTCTGGCGCTGGTGCGCCACGCCGACGACCCGTTGCCGATCCTGTGCGAAGGCCTGTGGCACGGGCGCATCCTGTTCGAGGCCAGCGGCGACCAGGGCTTTGGCTACGAt > 1:90137/1‑116 (MQ=255) tCTGCGTTCTGGCGCTGGTGCGCCACGCCGACGACCCGTTGCCGATCCTGTGCGAAGGCCTGTGGCACGGGCGCATCCTGTTCGAGGCCAGCGGCGACCAGGGCTTTGGCTACGATCCGCTGTTCTGGGTACCGGAGCGCAACTGCTCCa > 1:1103032/1‑150 (MQ=255) tGCGTTCTGGCGCTGGTGCGCCACGCCGACGACCCGTTGCCGATCCTGTGCGAAGGCCTGTGGCACGGGCGCATCCTGTTCGAGGCCAGCGGCGACCAGGGCTTTGGCTACGATCCGCTGTTCTGGGTACCGGAGCGCAACTGCTCCAgc > 1:555005/1‑150 (MQ=255) cgcaccagcgcCACGCCGACGACCCGTTGCCGATCCTGTGCGAAGGCCTGTGGCACGGGCGCATCCTGTTCGAGGCCAGCGGCGACCAGGGCTTTGGCTACGATCCGCTGTTCTGGGTACCGGAGCGCAACTGCTCCAGCGCCGATCTAg < 2:965663/143‑1 (MQ=255) gcTGGTGCGCCACGCCGACGACCCGTTGCCGATCCTGTGCGAAGGCCTGTGGCACGGGCGCATCCTGTTCGAGGCCAGCGGCGACCAGGGCTTTGGCTACGATCCGCTGTTCTGGGTACCGGAGCGCAACTGCTCCAGCGCCGATCTAGc > 1:202098/1‑150 (MQ=255) gTGCGCCACGCCGACGACCCGTTGCCGATCCTGTGCGAAGGCCTGTGGCACGGGCGCATCCTGTTCGAGGCCAGCGGCGACCAGGGCTTTGGCTACGATCCGCTGTTCTGGGTACCGGAGCGCAACTGCTCCAGCGCCGATCTAGCCCca > 2:703590/1‑150 (MQ=255) ccACGCCGACGACCCGTTGCCGATCCTGTGCGAAGGCCTGTGGCACGGGCGCATCCTGTTCGAGGCCAGCGGCGACCAGGGCTTTGGCTACGATCCGCTGTTCTGGGTACCGGAGCGCAACTGCTCCAGCGCCGATCTAGCCCCAGCAGa > 1:897271/1‑150 (MQ=255) ccGACGACCCGTTGCCGATCCTGTGCGAAGGCCTGTGGCACGGGCGCATCCTGTTCGAGGCCAGCGGCGACCAGGGCTTTGGCTACGATCCGCTGTTCTGGGTACCGGAGCGCAACTGCTCCAGCGCCGATCTAGCCCCAGCAGACAAGa > 1:1198332/1‑150 (MQ=255) cgacgaCCCGTTGCCGATCCTGTGCGAAGGCCTGTGGCACGGGCGCATCCTGTTCGAGGCCAGCGGCGACCAGGGCTTTGGCTACGATCCGCTGTTCTGGGTACCGGAGCGCAACTGCTCCAGCGCCGATCTAGCCCCAGCAGACAAGaa > 2:1132461/1‑150 (MQ=255) gacgacCCGTTGCCGATCCTGTGCGAAGGCCTGTGGCACGGGCGCATCCTGTTCGAGGCCAGCGGCGACCAGGGCTTTGGCTACGATCCGCTGTTCTGGGTACCGGAGCGCAACTGCTCCAGCGCCGATATAGCCCCAGCAGACAAGAAc > 2:231629/1‑150 (MQ=255) ccgacCCGTTGCCGATCCTGTGCGAAGGCCTGTGGCACGGGCGCATCCTGTTCGAGGCCAGCGGCGACCAGGGCTTTGGCTACGATCCGCTGTTCTGGGTACCGGAGCGCAACTGCTCCAGCGCCGATCTAGCCCCAGCAGACAAGAAcc < 2:1198332/149‑1 (MQ=255) ccGTTGCCGATCCTGTGCGAAGGCCTGTGGCACGGGCGCATCCTGTTCGAGGCCAGCGGCTACCAGGGCTTTGGCTACGATCCGCTGTTCTGGGTACCGGAGCGCAACTGCTCCAGCGCCGATCTAGCCCCAGCAGACAAGAACCAGCTc > 2:593288/1‑150 (MQ=255) ccGTTGCCGATCCTGTGCGAAGGCCTGTGGCACGGGCGCATCCTGTTCGAGGCCAGCGGCGACCAGGGCTTTGGCTACGATCCGCTGtt < 2:505705/89‑1 (MQ=255) ccGTTGCCGATCCTGTGCGAAGGCCTGTGGCACGGGCGCATCCTGTTCGAGGCCAGCGGCGACCAGGGCTTTGGCTACGATCCGCTGtt > 1:505705/1‑89 (MQ=255) cGATCCTGTGCGAAGGCCTGTGGCACGGGCGCATCCTGTTCGAGGCCAGCGGCGACCAGGGCTTTGGCTACGATCCGCTGTTCTGGGTACCGGAGCGCAACTGCTCCAGCGCCGAt > 2:154/1‑116 (MQ=255) cGATCCTGTGCGAAGGCCTGTGGCACGGGCGCATCCTGTTCGAGGCCAGCGGCGACCAGGGCTTTGGCTACGATCCGCTGTTCTGGGTACCGGAGCGCAACTGCTCCAGCGCCGAt < 1:154/116‑1 (MQ=255) cGATCCTGTGCGAAGGCCTGTGGCACGGGCGCATCCTGTTCGAGGCCAGCGGCGACCAGGGCTTTGGCTACGATCCGCTGTTCTGGGTACCGGAGCGCAACTGCTCCAGCGCCGATCTAGCCCCAGCAGACAAGAACCAGCTCAGCCAcc > 2:287739/1‑150 (MQ=255) aTCCTGTGCGAAGGCCTGTGGCACGGGCGCATCCTGTTCGAGGCCAGCGGCGACCAGGGCTTTGGCTACGATCCGCTGTTCTGGGTACCGGAGCGCAACTGCTCCAGCGCCGATCTAGCCCCAGCAGACAAGAACCAGCTCAGCCACcgc < 2:202098/150‑1 (MQ=255) cTGTGCGAAGGCCTGTGGCACGGGCGCATCCTGTTCGAGGCCAGCGGCGACCAGGGCTTTGGCTACGATCCGCTGTTCTGGGTACCGGAGCGCAACTGCTCCAGCGCCGATCTAGccc < 2:100912/118‑1 (MQ=255) cTGTGCGAAGGCCTGTGGCACGGGCGCATCCTGTTCGAGGCCAGCGGCGACCAGGGCTTTGGCTACGATCCGCTGTTCTGGGTACCGGAGCGCAACTGCTCCAGCGCCGATCTAGccc > 1:100912/1‑118 (MQ=255) | TCGGCGCGCTATGCCGATGGCAAAGGTGACGCGGCAAACAACGCCAAGCTGCTCGAAGCCTTGAAAGACGTGCCTGAAGCTGAGCGCAGTGCACAGTTCGTCTGCGTTCTGGCGCTGGTGCGCCACGCCGACGACCCGTTGCCGATCCTGTGCGAAGGCCTGTGGCACGGGCGCATCCTGTTCGAGGCCAGCGGCGACCAGGGCTTTGGCTACGATCCGCTGTTCTGGGTACCGGAGCGCAACTGCTCCAGCGCCGATCTAGCCCCAGCAGACAAGAACCAGCTCAGCCACCGC > NC_002947/5822786‑5823079 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |