Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 6,002,088 | T→C | 9.7% | E90G (GAG→GGG) | amaA ← | L‑pipecolate oxidase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 6,002,088 | 0 | T | C | 9.7% | 171.3 / 6.9 | 62 | E90G (GAG→GGG) | amaA | L‑pipecolate oxidase |
Reads supporting (aligned to +/- strand): ref base T (32/24); new base C (2/4); total (34/28) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 3.96e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.86e-01 |
CGGTGGCGTTGTGCGCCATGTGCAGCGTGCCTTTGTGCTGGGCCTGGCAGTCGATGCCGAGGCGCTCGATCATGGCGAACACTTC‑AGCCGGGGCTTCGCCAAGCACCTTGTTCAGGCGGCTACCCTGCTTCTGGCCAAGGGTGGCCTCGACGTCGTCGGGGCGGATCCACGTGCCGGCGTTGACCAGGCCGACGTTGCGCCCGGAGCCACCGTGGCCGATCTTCCAGGCCTCCAGCACGATCACCGACTTGCCCTGTTCGAGCAGGTGGATGGCCGCCGACAGGCCGGTAATACC > NC_002947/6001942‑6002236 | cGGTGGCGTTGTGCGCCATGTGCAGCGTGCCTTTGTGCTGGGCCTGGCAGTCGATGCCGAGGCGCTCGATCATGGCGAACACTTC‑AGCCGGGGCTTCGCCAAGCACCTTGTTCAGGCGGCTACCCTGCTTCTGGCCAAGGGTGGCCTCGa > 1:956228/1‑150 (MQ=255) ggTGGCGTTGTGCGCCATGTGCAGCGTGACTTTGTCCGGGGCCGGGCAGTCTATGCAGCGGCGCTCGATCATGGGGACGATATCGACGCCTCGC‑CCGTTGGGCACCTTGTTCAGGCGGCTACCCTGCTTATGGCCAAGGGTGTCCTCGAc > 1:275616/1‑150 (MQ=255) ggCGTTGTGCGCCATGTGCAGCGTGCCTTTGTGCTGGGCCTGGCAGTCGATGCCGAGGCGCTCGATCATGGCGAACACTTC‑AGCCGGGGCTTCGCCAAGCACCTTGTTCAGGCGGCTACCCTGCTTCTGGCCAAGGGTGGCCTCGAcgtc < 2:956228/150‑1 (MQ=255) ggCGTTGTGCGCCATGTGCAGCGTGCCTTTGTGCTGGGCCTGGCAGTCGATGCCGAGGCGCTCGATCATGGCGAACACTTC‑AGCCGGGGCTTCGCCAAGCACCTTGTTCAGGCGGCTACCCTGCTTCTGGCCAAGGGTGGCCTCGAcgtc < 1:170151/150‑1 (MQ=255) tgCGCTATGTGGAGCGTGTCTTTGTGCTGGGCCTGGCAGTCGATGCCGAGGCGCTCGATCATGGCGAACACTTC‑AGCCGGGGCTTCGCTAAGCACCTTGTTCAGGCGGCTACCCTGCTTCTGGCCAAGGGTGGCCCCGACGACGTCgagg < 2:409571/150‑1 (MQ=255) tgCGCCATGTGCAGCGTGCCTTTGTGCTGGGCCTGGCAGTCGATGCCGAGGCGCTCGATCATGGCGAACACTTC‑AGCCGGGGCTTCGCCAAGCACCTTGTTCAGGCGGCTACCCTGCTTCTGGCCAAGGGTGGCCTCGACGTCGTCgggg < 1:277873/150‑1 (MQ=255) gcgcCATGTGCAGCGTGCCTTTGTGCTGGGCCTGGCAGTCGATGCCGAGGCGCTAGCTGAGTTCTAACACTTA‑AGCCGGGGCTTCGCCAAGCACCTTGTTCAGGCGGCTACCCTGCTTCTGGCCAAGGGTGGCCCCGACGACGTCGAGGc < 2:465958/150‑1 (MQ=255) gcCATGTGCAGCGTGCCTTTGTGCTGGGCCTGGCAGTCGATGCCGAGGCGCTCGATCATGGCGAACACTTC‑AGCCGGGGCTTCGCCAAGCACCTTGTTCAGGCGGCTACCCTGCTTCTGGCCAAGGGTGGCCTCGACGTCGTCGGGGCgg > 2:763827/1‑150 (MQ=255) gcCATGTGCAGCGTGCCTTTGTGCTGGGCCTGGCAGTCGATGCCGAGGCGCTCGATCATGGCGAACACTTC‑AGCCGGGGCTTCGCCAAGCACCTTGTTCAGGCGGCTACCCTGCTTCTGGCCAAGGGTGGCCTCGACGTCGTCGGGGCgg > 2:281570/1‑150 (MQ=255) ccATGTGCAGCGTGCCTTTGTGCTGGGCCTGGCAGTCGATGCCGAGGCGCTCGATCATGGCGAACACTTC‑AGCCGGGGCTTCGCCAAGCACCTTGTTCAGGCGGCTACCCTGCTTCTGGCCAAGGGTGGCCTCGACGTCGTCGGGGCGGa < 2:971953/150‑1 (MQ=255) gtgCAGCGTGCCTTTGTGCTGGGCCTGGCAGTCGATGCCGAGGCGCTCGATCATGGCGAACACTTC‑AGCCGGGGCTTCGCCAAGCACCTTGTTCAGGCGGCTACCCTGCTTCTGGCCAAGGGTGGCCTCGACGTCGTCGGGGCGGATCCa < 2:1099192/150‑1 (MQ=255) cTTTGTGCTGGGCCTGGCAGTCGATGCCGAGGCGCTCGATCATGGCGAACACTTC‑AGCCGGGGCTTCGCCAAGCACCTTGTTCAGGCGGCTACCCTGCTTCTGCCCACGGGTGGCCTCGACCTCGTCGGGGCGGAGCCTCGTGCCgtggt > 2:333071/1‑146 (MQ=255) cTGGGCCTGGCAGTCGATGCCGAGGCGCTCGATCATGGCGAACACTTC‑AGCCGGGGCTTCGCCAAGCACCTTGTTCAGGCGGCTACCCTGCTTCTGGCCAAGGGTGGCCTCGACGTCGTCGGGGCGGATCCACGTGCCGGCGTTGACCAg < 2:355418/150‑1 (MQ=255) tGGGCCTGGCAGTCGATGCCGAGGCGCTCGATCATGGCGAACACTTC‑AGCCGGGGCTTCGCCAAGCACCTTGTTCAGGCGGCTACCCTGCTTCTGGCCAAGGGTGGCCTCGACGTCGTCGGGGCGGATCCACGTGCCGGCGTTGACCAgg < 1:1067555/150‑1 (MQ=255) gggCCTGGCAGTCGATGCCGAGGCGCTCGATCATGGCGAACACTTC‑AGCCGGGGCTTCGCCAAGCACCTTGTTCAGGCGGCTACCCTGCTTCTGGCCAAGGGTGGCCTCGACGTCGTCGGGGCGGATCCACGTGCCGGCGTTGACCAGGc > 2:288459/1‑150 (MQ=255) ggCCTGGCAGTCGATGCCGAGGCGCTCGATCATGGCGAACACTTC‑AGCCGGGGCTTCGCCAAGCACCTTGTTCAGGCGGCTACCCTGCTTCTGGCCAAGGGTGGCCCCGACGACGTCGAGGcca > 1:977967/1‑122 (MQ=255) ggCCTGGCAGTCGATGCCGAGGCGCTCGATCATGGCGAACACTTC‑AGCCGGGGCTTCGCCAAGCACCTTGTTCAGGCGGCTACCCTGCTTCTGGCCAAGGGTGGCCCCGACGACGTCGAGGcca < 2:977967/124‑3 (MQ=255) gCCTGGCAGTCGATGCCGAGGCGCTCGATCATGGCGAACACTTC‑AGCCGGGGCTTCGCCAAGCACCTTGTTCAGGCGGCTACCCTGCTTCTGGCCAAGGGTGGCCTCGACGTCGTCGGGGCGGATCCACGTGCCGGCGTTGACCAGGCCg < 2:275616/150‑1 (MQ=255) cTGGCAGTCGATGCCGAGGCGCTCGATCATGGCGAACACTTC‑AGCCGGGGCTTCGCCAAGCACCTTGTTCAGGCGGCTACCCTGCTTCTGGCCAAGGGTGGCCTCGACGTCGTCGGGGCGGATCCACGTGCCGGCGTTGACCAGGCCGAc > 2:898856/1‑150 (MQ=255) gCAGTCGATGCCGAGGCGCTCGATCATGGCGAACACTTC‑AGCCGGGGCTTCGCCAAGCACCTTGTTCAGGCGGCTACCCTGCTTCTGGCCAAGGGTGGCCTCGACGTCGTCGGGGCGGATCCACGTGCCGGCGTTGACCAGGCCGACGtt > 1:617771/1‑150 (MQ=255) aGTCGATGCCGAGGCGCTCGATCATGGCGAACACTTC‑AGCCGGGGCTTCGCCAAGCACCTTGTTCAGGCGGCTACCCTGCTTCTGGCCAAGGGTGGCCTCGACGTCGTCGGGGCGGATCCACGTGCCGGCGTTGACCAGGCCGACGTTgc > 2:612262/1‑150 (MQ=255) tCGATGCCGAGGCGCTCGATCATGGCGAACACTTC‑AGCCGGGGCTTCGCCAAGCACCTTGTTCAGGCGGCTACCCTGCTTCTGGCCAAGGGTGGCCTCGACGTCGTCGGGGCGGATCCACGTGCCGGCGTTGACCAGGCCGACGTTgcgc > 1:1067453/1‑150 (MQ=255) tGCCGAGGCGCTCGATCATGGCGAACACTTC‑AGCCGGGGCTTCGCCAAGCACCTTGTTCAGGCGGCTACCCTGCTTCTGGCCAAGGGTGGCCTCGACGTCGTCGGGGCGGATCCACGTGCCGGCGTTGACCAGGCCGACGTTGCGCCCgg > 1:913410/1‑150 (MQ=255) cGAGGCGCTCGATCATGGCGAACACTTC‑AGCCGGGGCTTCGCCAAGCACCTTGTTCAGGCGGCTACCCTGCTTCTGGCCAAGGGTGGCCTCGACGTCGTCGGGGCGGATCCACGTGCCGGCGTTGACCAGGCCGACGTTGCGCCCGGAGc < 2:1090695/150‑1 (MQ=255) gcgcTCGATCATGGCGAACACTTC‑AGCCGGGGCTTCGCCAAGCACCTTGTTCAGGCGGCTACCCTGCTTCTGGCCAAGGGTGGCCTCGACGTCGTCGGGGCGGATCCACGTGCCGGCGTTGACCAGGCCGACGTTGCGCCCGGAGCCAcc > 1:646491/1‑150 (MQ=255) cTCGATCATGGCGAACACTTC‑AGCCGGGGCTTCGCCAAGCACCTTGTTCAGGCGGCTACCCTGCTTCTGGCCAAGGGTGGCCTCGACGTCGTCGGGGCGGATCCACGTGCCGGCGTTGACCAGGCCGACGTTGCGCCCGGAGCCACCGTg > 2:140944/1‑150 (MQ=255) aTGGCGAACACTTC‑AGCCGGGGCTTCGCCAAGCACCTTGTTCAGGCGGCTACCCTGCTTCTGGCCAAGGGTGGCCTCGACGTCGTCgg > 2:1072242/1‑88 (MQ=255) aTGGCGAACACTTC‑AGCCGGGGCTTCGCCAAGCACCTTGTTCAGGCGGCTACCCTGCTTCTGGCCAAGGGTGGCCTCGACGTCGTCgg < 1:1072242/88‑1 (MQ=255) aTGGCGAACACTTC‑AGCCGGGGCTTCGCCAAGCACCTTGTTCAGGCGGCTACCCTGCTTCTGGCCAAGGGTGGCCTCGACGTCGTCGGGGCGGATCCACGTGCCGGCGTTGACCAGGCCGACGTTGCGCCCGGAGCCACCGTGGCCGATc < 1:618517/150‑1 (MQ=255) cGAACACTTC‑AGCCGGGGCTTCGCCAAGCACCTTGTTCAGGCGGCTACCCTGCTTCTGGCCAAGGGTGGCCTCGACGTCGTCGGGGCGGATCCACGTGCCGGCGTTGACCAGGCCGACGTTGCGCCCGGAGCCACCGTGGCCGATCTTcc > 2:308435/1‑150 (MQ=255) cacTTC‑AGCCGGGGCTTCGCCAAGCACCTTGTTCAGGCGGCTACCCTGCTTCTGGCCAAGGGTGGCCTCGACGTCGTCGGGGCGGATCCACGTGCCGGCGTTGACCAGGCCGACGTTGCGCCCGGAGCCACCGTGGCCGATCTTCCAGGc < 1:763827/150‑1 (MQ=255) acTTC‑AGCCGGGGCTTCGCCAAGCACCTTGTTCAGGCGGCTACCCTGCTTCTGGCCAAGGGTGGCCCCGACGACGTCGAGGccac < 1:796519/85‑4 (MQ=255) acTTC‑AGCCGGGGCTTCGCCAAGCACCTTGTTCAGGCGGCTACCCTGCTTCTGGCCAAGGGTGGCCCCGACGACGTCGAGGccac > 2:796519/1‑82 (MQ=255) ttC‑AGCCGGGGCTTCGCCAAGCACCTTGTTCAGGCGGCTACCCTGCTTCTGGCCAAGGGTGGCCTCGACGTCGTCGGGGCGGATCCACGTGCCGGCGTTGACCAGGCCGACGTTGCGCCCGGAGCCACCGTGGCCGATCTTCCAGGCCTc > 2:56175/1‑150 (MQ=255) ttC‑AGCCGGGGCTTCGCCAAGCACCTTGTTCAGGCGGCTACCCTGCTTCTGGCCAAGGGTGGCCTCGACGTCGTCGGGGCGGATCCACGTGCCGGCGTTGACCAGGCCGACGTTGCGCCCGGAGCCACCGTGGCCGATCTTCCAGGCCTc > 1:466762/1‑150 (MQ=255) ttC‑AGCCGGGGCTTCGCCAAGCACCTTGTTCAGGCGGCTACCCTGCTTCTGGCCAAGGGTGGCCTCGACGTCGTCGGGGCGGATCCACGTGCCGGCGTTGACCAGGCCGACGTTGCGCCCGGAGCCACCGTGGCCGATCTTCCAGGCCTc > 1:427911/1‑150 (MQ=255) ttC‑AGCCGGGGCTTCGCCAAGCACCTTGTTCAGGCGGCTACCCTGCTTCTGGCCAAGGGTGGCCTCGACGTCGTCGGGGCGGATCCACGTGCCGGCGTTGAACAGGCGGACGTTGCGCCCGGAGCCACCGTGGCCGATCTTCCAGGCCTc > 1:560220/1‑150 (MQ=255) tC‑AGCCGGGGCTTCGCCAAGCACCTTGTTCAGGCAGCTACCCTGCTTCTGGCCAAGGGTGGCCTCGACGTCGTCGGGGCGGATCCACGTGCCGGCGtt < 2:117289/98‑1 (MQ=255) tC‑AGCCGGGGCTTCGCCAAGCACCTTGTTCAGGCAGCTACCCTGCTTCTGGCCAAGGGTGGCCTCGACGTCGTCGGGGCGGATCCACGTGCCGGCGtt > 1:117289/1‑98 (MQ=255) aGCCGGGGCTTCGCCAAGCACCTTGTTCAGGCGGCTACCCTGCTTCTGGCCAAGGGTGGCCTCGACGTCGTCGGGGCGGATCCACGTGCCGGCGTTGACCAGGCCGACGTTGCGCCCGGAGCCACCGTGGCCGATCTTCCAGGCCTCCAg > 1:460344/1‑150 (MQ=255) gCCGGGGCTTCGCCAAGCACCTTGTTCAGGCGGCTACCCTGCTTCTGGCCAAGGGTGGCCTCGACGTCGTCGGGGCGGATCCACGTGCCGGCGTTGACCAGGc > 1:392722/1‑103 (MQ=255) gCCGGGGCTTCGCCAAGCACCTTGTTCAGGCGGCTACCCTGCTTCTGGCCAAGGGTGGCCTCGACGTCGTCGGGGCGGATCCACGTGCCGGCGTTGACCAGGc < 2:392722/103‑1 (MQ=255) ggggCTTCGCCAAGCAGCTTGTTCAGGCGGCTACCCGGCTTCTGTCAAATGGGGGCCTCGACGTCGTTGGGGCGGATGCACGTGACGGCGTTGACCAGGCCGACGTTGCGCCCGGAGCGACCGTGGCCGGTCTTCCGGGCCTCCAGCACg > 2:72897/1‑150 (MQ=255) ttCGCCAAGCACCTTGTTCAGGCGGCTACCCTGCTTCTGGCCAAGGGTGGCCTCGAc < 2:943413/57‑1 (MQ=255) ttCGCCAAGCACCTTGTTCAGGCGGCTACCCTGCTTCTGGCCAAGGGTGGCCTCGAc > 1:943413/1‑57 (MQ=255) ttCGCCAAGCACCTTGTTCAGGCGGCTACCCTGCTTCTGGCCAAGGGTGGCCTCGACGTCGTCGGGGCGGATCCACGTGCCGGCGTTGACCAGGCCGACGTTGCGCCCGGAGCCACCGTGGCCGATCTTCCAGGCCTCCAGCACGATCAc < 1:288459/150‑1 (MQ=255) cAAGCACCTTGTTCAGGCGGCTACCCTGCTTCTGGCCAAGGGTGGCCTCGACGTCGTCGGGGCGGATCCACGTGCCGGCGTTGACCAGGCCGACGTTGCGCCCGGAGCCACCGTGGCCGATCTTCCAGGCCTCCAGCACGATCACCGACt > 1:441105/1‑150 (MQ=255) ttGTTCAGGCGGCTACCCTGCTTCTGGCCAAGGGTGGCCTCGACGTCGTCGGGGCGGATCCACGTGCCGGCGTTGACCAGGCCGACGTTGCGCCCGGAGCCACCGTGGCCGATCTTCCAGGCCTCCAGCACGATCACCGACTTGCCCTGt < 2:441105/150‑1 (MQ=255) ggcTACCCTGCTTCTGGCCAAGGGTGGCCTCGACGTCGTCGGGGCGGATCCACGTGCCGGCGTTGACCAGGCCGACGTTGCGCCCGGAGCCACCGTGGCCGATCTTCCAGGCCTCCAGCACGATCACCGACTTGCCCTGTTCGAGCAGGt < 2:460344/150‑1 (MQ=255) tACCCTGCTTCTGGCCAAGGGTGGCCTCGACGTCGTCGGGGCGGATCCACGTGCCGGCGTTGACCAGGCCGACGTTGCGCCCGGAGCCACCGt < 2:344649/93‑1 (MQ=255) tACCCTGCTTCTGGCCAAGGGTGGCCTCGACGTCGTCGGGGCGGATCCACGTGCCGGCGTTGACCAGGCCGACGTTGCGCCCGGAGCCACCGt > 1:344649/1‑93 (MQ=255) tACCCTGCTTCTGGCCAAGGGTGGCCTCGACGTCGTCGGGGCGGATCCACGTGCCGGCGTTGACCAGGCCGACGTTGCGCCCGGAGCCACCGTGGCCGATCTTCCAGGCCTCCAGCACGATCACCGACTTGCCCTGTTCGAGCAGGTGGa > 2:305238/1‑150 (MQ=255) aCCCTGCTTCTGGCCAAGGGTGGCCTCGACGTCGTCGGGGCGGATCCACGTGCCGGCGTTGACCAGGCCGACGTTGCGCCCGGAGCCACCGTGGCCGATCTTCCAGGCCTCCAGCACGATCACCGACTTGCCCTGTTCGAGCAGGTGGAt < 1:305238/150‑1 (MQ=255) cccTGCTTCTGGCCAAGGGTGGCCTCGACGTCGTCGGGGCGGATCCACGTGCCGGCGTTGACCAGGCCGACGTTGCGCCCGGAGCCACCGTGGCCGATCTTCCAGGCCTCCAGCACGATCACCGACTTGCCCTGTTCGAGCAGGTGGATg > 1:686755/1‑150 (MQ=255) gCTTCTGGCCAAGGGTGGCCTCGACGTCGTCGGGGCGGATCCACGTGCCGGCGTTGACCAGGCCGACGTTGCGCCCGGAGCCACCGTGGCCGATCTTCCAGGCCTCCAGCACGATCACCGACTTGCCCTGTTCGAGCAGGTGGATGgccg > 1:1016340/1‑150 (MQ=255) ttCTGGCCAAGGGTGGCCTCGACGTCGTCGGGGCGGATCCACGTGCCGGCGTTGACCAGGCCGACGTTGCGCCCGGAGCCACCGTGGCCGATCTTCCAGGCCTCCAGCACGATCACCGACTTGCCCTGTTCGAGCAGGTGGATGgccgcc < 1:308435/150‑1 (MQ=255) cAAGGGTGGCCTCGACGTCGTCGGGGCGGATCCACGTGCCGGCGTTGACCAGGCCGACGTTGCGCCCGGAGCCACCGTGGCCGATCTTCCAGGCCTCCAGCACGATCACCGACTTGCCCTGTTCGAGCAGGTGGATGGCCGCCGACAGGc < 1:281570/150‑1 (MQ=255) tGGCCTCGACGTCGTCGGGGCGGATCCACGTGCCGGCGTTGACCAGGCCGACGTTGCGCCCGGAGCCACCGTGGCCGATCTTCCAGGCCTCCAGCACGATCACCGACTTGCCCTGTTCGAGCAGGt < 2:513176/126‑1 (MQ=255) tGGCCTCGACGTCGTCGGGGCGGATCCACGTGCCGGCGTTGACCAGGCCGACGTTGCGCCCGGAGCCACCGTGGCCGATCTTCCAGGCCTCCAGCACGATCACCGACTTGCCCTGTTCGAGCAGGt > 1:513176/1‑126 (MQ=255) tGGCCTCGACGTCGTCGGGGCGGATCCACGTGCCGGCGTTGACCAGGCCGACGTTGCGCCCGGAGCCACCGTGGCCGATCTTCCAGGCCTCCAGCACGATCACCGACTTGCCCTGTTCGAGCAGGTGGATGGCCGCCGACAGGCCGGTaa < 1:140944/150‑1 (MQ=255) cTCGACGTCGTCGGGGCGGATCCACGTGCCGGCGTTGACCAGGCCGACGTTGCGCCCGGAGCCACCGTGGCCGATCTTCCAGGCCTCCAGCACGATCACCGACTTGCCCTGTTCGAGCAGGTGGATGGCCGCCGACAGGCCGGTAATAcc > 1:670513/1‑150 (MQ=255) cTCGACGTCGTCGGGGCGGATCCACGTGCCGGCGTTGACCAGGCCGACGTTACGCCCGGAGCCACCGTGGCCGATCTTCCAGGCCTCCAGCACGATCACCGACTTGCCCTGTTCGAGCAGGTGGATGGCCGCCGACAGGCCGGTAATAcc > 2:595057/1‑150 (MQ=255) | CGGTGGCGTTGTGCGCCATGTGCAGCGTGCCTTTGTGCTGGGCCTGGCAGTCGATGCCGAGGCGCTCGATCATGGCGAACACTTC‑AGCCGGGGCTTCGCCAAGCACCTTGTTCAGGCGGCTACCCTGCTTCTGGCCAAGGGTGGCCTCGACGTCGTCGGGGCGGATCCACGTGCCGGCGTTGACCAGGCCGACGTTGCGCCCGGAGCCACCGTGGCCGATCTTCCAGGCCTCCAGCACGATCACCGACTTGCCCTGTTCGAGCAGGTGGATGGCCGCCGACAGGCCGGTAATACC > NC_002947/6001942‑6002236 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |