| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 565,381 | T→C | 6.3% | Y286Y (TAT→TAC) | katA → | catalase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 565,381 | 0 | T | C | 6.3% | 181.8 / 2.7 | 63 | Y286Y (TAT→TAC) | katA | catalase |
| Reads supporting (aligned to +/- strand): ref base T (27/32); new base C (2/2); total (29/34) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.76e-01 | |||||||||||
TACGCTCAGCGCGACCTCTTCGAGGCCATCGAGCGTGGCGACTACCCGCGCTGGACTGTCTGCATTCAGGTGATGAGCGAAGCCGAGGCTGCCAGCCGCGACGAGAACCCATTCGACGTGACCAAGACCTGGTCGCAGAAGGATTATCCACTCATCGAGGTGGGTGTGCTGGAGCTCAACCGTAACCCGCTCAACTATTTTGCGGAGGTCGAGCAGGCCGCGTTCGGGCCGAGCAATATGGTGCCCGGCGTCGGTCTTTCGCCGGACCGCATGCTGCAAGGCCGTGTATTCGC > NC_002947/565235‑565527 | tACGCTCAGCGCGACCTCTTCGAGGCCATCGAGCGTGGCGACTACCCGCGCTGGACTGTCTGCATTCAGGTGATGAGCGAAGCCGAGGCTGCCAGCCGCGACGAGAACCCATTCGACGTGACCAAGACCTGGTCGCAGAAGGATTATCCa < 2:484204/150‑1 (MQ=255)tACGCTCAGCGCGACCTCTTCGAGGCCATCGAGCGTGGCGACTACCCGCGCTGGACTGTCTGCATTCAGGTGATGAGCGAAGCCGAGGCTGCCAGCCGCGACGAGAACCCATTCGACGTGACCAAGACCTGGTCGCAGAAGGATTATCCa > 1:231294/1‑150 (MQ=255) gCTCAGCGCGACCTCTTCGAGGCCATCGAGCGTGGCGACTACCCGCGCTGGACTGTCTGCATTCAGGTGATGAGCGAAGCCGAGGCTGCCAGCCGCGACGAGAACCCATTCGACGTGACCAAGACCTGGTCGCAGAAGGATTATCCACTc > 2:1020196/1‑150 (MQ=255) tCAGCGCGACCTCTTCGAGGCCATCGAGCGTGGCGACTACCCGCGCTGGACTGTCTGCATTCAGGTGATGAGCGAAGCCGAGGCTGCCAGCCGCGACGAGAACCCATTCGACGTGACCAAGACCTGGTCGCAGAAGGATTATCCACTCAt > 1:82004/1‑150 (MQ=255) ctctTCGAGGCCATCGAGCGTGGCGACTACCCGCGCTGGACTGTCTGCATTCAGGTGATGAGCGAAGCCGAGGCTGCCAGCCGCGACGAGAACCCATTCGACGTGACCAAGACCTGGTCGCAGAAGGATTATCCACTCATCGAggtgggt < 1:1034910/150‑1 (MQ=255) tctTCGAGGCCATCGAGCGTGGCGACTACCCGCGCTGGACTGTCTGCATTCAGGTGATGAGCGAAGCCGAGGCTGCCAGCCGCGACGAGAACCCATTCGACGTGACCAAGACCTGGTCGCAGAAGGATTACCCACTCATCGAggtgggtg > 1:20379/1‑150 (MQ=255) ttCGAGGCCATCGAGCGTGGCGACTACCCGCGCTGGACTGTCTGCATTCAGGTGATGAGCGAAGCCGAGGCTGCCAGCCGCGACGAGAACCCATTCGACGTGACCAAGACCTGGTCGCAGAAGGATTATCCACTCATCGAGGTGGGtgtg > 1:762045/1‑150 (MQ=255) gAGGCCATCGAGCGTGGCGACTACCCGCGCTGTACGCTGTTCATTCAGGTGATGAGCGAAGCCGAGGCTGCCAGCCGCGACGAGAACCCATTCGACGTGACCAAGACCTGGTCGCAGAAGGATTATCCACTCATCGAGGTGGGTGTGCTg < 2:95830/150‑1 (MQ=255) gAGGCCATCGAGCGTGGCGACTACCCGCGCTGGACTGTCTGCATTCAGGTGATGAGCGAAGCCGAGGCTGCCAGCCGCGACGAGAACCCATTCGACGTGACCAAGACCTGGTCGCAGAAGGATTATCCACTCATCGAGGTGGGTGTGCTg < 1:1025550/150‑1 (MQ=255) cGAGCGTGGCGACTACCCGCGCTGGACTGTCTGCATTCAGGTGCTGAGCGAAGCCGAGGCTGCCAGCCGCGACGAGAACCCATTCGACGTGACCAAGACCTGGTCGCAGAAGGATTACCCACTCATCGAGGTGGGTGTGCTGGAg < 2:809905/145‑1 (MQ=255) cGAGCGTGGCGACTACCCGCGCTGGACTGTCTGCATTCAGGTGATGAGCGAAGCCGAGGCTGCCAGCCGCGACGAGAACCCATTCGACGTGACCAAGACCTGGTCGCAGAAGGATTACCCACTCATCGAGGTGGGTGTGCTGGAg > 1:809905/1‑145 (MQ=255) tACCCGCGCTGGACTGTCTGCATTCAGGTGATGAGCGAAGCCGAGGCTGCCAGCCGCGACGAGAACCCATTCGACGTGACCAAGACCTGGTCGCAGAAGGATTATCCACTCATCGAGGTGGGTGTGCTGGAGCTCAACCGTAACCCGCTc < 1:1020196/150‑1 (MQ=255) tACCCGCGCTGGACTGTCTGCATTCAGGTGATGAGCGAAGCCGAGGCTGCCAGCCGCGACGAGAACCCATTCGACGTGACCAAGACCTGGTCGCAGAAGGATTACCCACTCATCGAGGTGGGTGTGCTGGAGCTCAACCGTAACCCGCTc < 2:20379/150‑1 (MQ=255) cccGCGCTGGACTGTCTGCATTCAGGTGATGAGCGAAGCCGAGGCTGCCAGCCGCGACGAGAACCCATTCGACGTGACCAAGACCTGGTCGCAGAAGGATTATCCACTCATCGAGGTGGGTGTGCTGGAGCTCAACCGTAACCCGCTCaa > 2:1121560/1‑150 (MQ=255) ccGCGCTGGACTGTCTGCATTCAGGTGATGAGCGAAGCCGAGGCTGCCAGCCGCGACGAGAACCCATTCGACGTGACCAAGACCTGGTCGCAGAAGGATTATCCACTCATCGAGGTGGGTGTGCTGGAGCTCAAc > 2:1094547/1‑135 (MQ=255) ccGCGCTGGACTGTCTGCATTCAGGTGATGAGCGAAGCCGAGGCTGCCAGCCGCGACGAGAACCCATTCGACGTGACCAAGACCTGGTCGCAGAAGGATTATCCACTCATCGAGGTGGGTGTGCTGGAGCTCAAc < 1:1094547/135‑1 (MQ=255) tGTCTGCATTCAGGTGATGAGCGAAGCCGAGGCTGCCAGCCGCGACGAGAACCCATTCGACGTGACCAAGACCTGGTCGCAGAAGGATTATCCACTCATCGAGGTGGGTGTGCTGGAGCTCAACCGTAACCCGCTCAACTATTTTGCGGa < 1:113969/150‑1 (MQ=255) tGTCTGCATTCAGGTGATGAGCGAAGCCGAGGCTGCCAGCCGCGACGAGAACCCATTCGACGTGACCAAGACCTGGTCGCAGAAGGATTATCCACTCATCGAGGTGGGTGTGCTGGAGCTCAACCGTAACCCGCTCAACTATTTTGCGGa < 2:429511/150‑1 (MQ=255) gTCTGCATTCAGGTGATGAGCGAAGCCGAGGCTGCCAGCCGCGACGAGAACCCATTCGACGTGACCAAGACCTGGTCGCAGAAGGATTATCCACTCATCGAGGTGGGTGTGCTGGAGCTCAACCGTAACCCGCTCAACTATTTTGCGGAg < 2:762045/150‑1 (MQ=255) tCTGCATTCAGGTGATGAGCGAAGCCGAGGCTGCCAGCCGCGACGAGAACCCATTCGACGTGACCAAGACCTGGTCGCAGAAGGATTATCCACTCATCGAGGTGGGTGTGCTGGAGCTCAACCGTAACCCGCTCAACTATTTTGCGGAgg > 1:738135/1‑150 (MQ=255) cTGCATTCAGGCGATGAGCGAAGCCGGGTCTGCCACCCGCGAAAAGAACCCACTGGACGTGACCAAGACCTGGTCGCAGAAGGATTATCCACGCAAAGAGGTGGGTGTGCTGGAGCTCAACCGTAACCCGCTCAACTATTTTGCGGAGGt < 2:396047/150‑1 (MQ=255) tGCATTCAGGTGATGAGCGAAGCCGAGGCTGCCAGCCGCGACGAGAACCCATTCGACGTGACCAAGACCTGGTCGCAGAAGGATTATCCACTCATCGAGGTGGGTGTGCTGGAGCTCAACCGTAACCCGCTCAACTATTTTGCGGAGGTc < 1:542906/150‑1 (MQ=255) cATTCAGGTGATGAGCGAAGCCGAGGCTGCCAGCCGCGACGAGAACCCATTCGACGTGACCAAGACCTGGTCGCAGAAGGATTATCCACTCATCGAGGTGGGTGTGCTGGAGCTCAACCGTAACCCGCTCAACTATTTTGCGGAGGTCGa > 1:800453/1‑150 (MQ=255) ttCAGGTGATGAGCGAAGCCGAGGCTGCCAGCCGCGACGAGAACCCATTCGACGTGACCAAGACCTGGTCGCAGAAGGATTATCCACTCATCGAGGTGGGTGTGCTGGAGCTCAACCGTAACCCGCTCAACTATTTTGCGGAGGTCGAGc > 1:959020/1‑150 (MQ=255) tCAGGTGATGAGCGAAGCCGAGGCTGCCAGCCGCGACGAGAACCCATTCGACGTGACCAAGACCTGGTCGCAGAAGGATTATCCACTCATCGAGGTGGGTGTGCTGGAGCTCAACCGTAACCCGCTCAACTATTTTGCGGAGGTCGAGCa < 2:231294/150‑1 (MQ=255) cAGGTGATGAGCGAAGCCGAGGCTGCCAGCCGCGACGAGAACCCATTCGACGTGACCAAGACCTGGTCGCAGAAGGATTATCCACTCATCGAGGTGGGTGTGCTGGAGCTCAACCGTAACCCGCTCAACTATTTTGCGGAGGTCGAGCAg < 2:800453/150‑1 (MQ=255) gatgaGCGAAGCCGAGGCTGCCAGCCGCGACGAGAACCCATTCGACGTGACCAAGACCTGGTCGCAGAAGGATTATCCACTCATCGAGGTGGGTGTGCTGGAGCTCAACCGTAACCCGCTCAACTATTTTGCGGAGGTCGAGCAGGCcgc > 1:317984/1‑150 (MQ=255) gCGAAGCCGAGGCTGCCAGCCGCGACGAGAACCCATTCGACGTGACCAAGACCTGGTCGCAGAAGGATTATCCACTCATCGAGGTGGGTGTGCTGGAGCTCAACCGTAACCCGCTCAACTATTTTGCg > 1:804059/1‑128 (MQ=255) gCGAAGCCGAGGCTGCCAGCCGCGACGAGAACCCATTCGACGTGACCAAGACCTGGTCGCAGAAGGATTATCCACTCATCGAGGTGGGTGTGCTGGAGCTCAACCGTAACCCGCTCAACTATTTTGCg < 2:804059/128‑1 (MQ=255) gCGAAGCCGAGGCTGCCAGCCGCGACGAGAACCCATTCGACGTGACCAAGACCTGGTCGCAGAAGGATTATCCACTCATCGAGGTGGGTGTGCTGGAGCTCAACCGTAACCCGCTCAACTATTTTGCGGAGGTCGAGCAGGCCGCGTTCg > 1:93162/1‑150 (MQ=255) cGAAGCCGAGGCTGCCAGCCGCGACGAGAACCCATTCGACGTGACCAAGACCTGGTCGCAGAAGGATTATCCACTCATCGAGGTGGGTGTGCTGGAGCTCAACCGTAACCCGCTCAACTATTTTGCGGAGGTCGAGCAGGCCGCGTTCgg < 2:161341/150‑1 (MQ=255) gaggCCGGGGCTGCCAGCCGCGACGAGAACCCATTCGACGTGACCAAGACCTGGTCGCAGAAGGATTATCCACTCATCGAGGTGGGTGTGCTGGAGCTCAACCGTAACCCGCTCAACTATTTTGCGGAGGTCGAGCAGGCCGCGTTCggg < 2:373680/147‑1 (MQ=255) gAAGCCGAGGCTGCCAGCCGCGACGAGAACCCATTCGACGTGACCAAGACCTGGTCGCAGAAGGATTATCCACTCATCGAGGTGGGTGTGCTGGAGCTCAACCGTAACCCGCTCAACTATTTTGCGGAGGTCGAGCAGGCCGCGTTCggg < 1:383430/150‑1 (MQ=255) gCCAGCCGCGACGAGAACCCATTCGACGTGACCAAGACCTGGTCGCAGAAGGATTATCCACTCATCGAGGTGGGTGTGCTGGAGCTCAACCGTAACCCGCTCAACTATTTTGCGGAGGTCGAGCAGGCCGCGTTCGGGCCGAGCAATATg < 2:93162/150‑1 (MQ=255) gacgaGAACCCATTCGACGTGACCAAGACCTGGTCGCAGAAGGATTATCCACTCATCGAGGTGGGTGTGCTGGAGCTCAACCGTAACCCGCTCAACTATTTTGCGGAGGTCGAGCAGGcc < 1:1009939/120‑1 (MQ=255) gacgaGAACCCATTCGACGTGACCAAGACCTGGTCGCAGAAGGATTATCCACTCATCGAGGTGGGTGTGCTGGAGCTCAACCGTAACCCGCTCAACTATTTTGCGGAGGTCGAGCAGGcc > 2:1009939/1‑120 (MQ=255) gacgaGAACCCATTCGACGTGACCAAGACCTGGTCGCAGAAGGATTATCCACTCATCGAGGTGGGTGTGCTGGAGCTCAACCGTAACCCGCTCAACTATTTTGCGGAGGTCGAGCAGGCCGCGTTCgg < 2:1032171/128‑1 (MQ=255) gacgaGAACCCATTCGACGTGACCAAGACCTGGTCGCAGAAGGATTATCCACTCATCGAGGTGGGTGTGCTGGAGCTCAACCGTAACCCGCTCAACTATTTTGCGGAGGTCGAGCAGGCCGCGTTCgg > 1:1032171/1‑128 (MQ=255) gagaACCCATTCGACGTGACCAAGACCTGGTCGCAGAAGGATTATCCACTCATCGAGGTGGGTGTGCTGGAGCTCAACCGTAACCCGCTCAACTATTTTGCGGAGGTCGAGCAGGCCGCGTTCGGGc > 1:803834/1‑127 (MQ=255) gagaACCCATTCGACGTGACCAAGACCTGGTCGCAGAAGGATTATCCACTCATCGAGGTGGGTGTGCTGGAGCTCAACCGTAACCCGCTCAACTATTTTGCGGAGGTCGAGCAGGCCGCGTTCGGGc < 2:803834/127‑1 (MQ=255) cccATTCGACGTGACCAAGACCTGGTCGCAGAAGGATTATCCACTCATCGAGGTGGGTGTGCTGGAGCTCAACCGTAACCCGCTc < 1:844810/85‑1 (MQ=255) cccATTCGACGTGACCAAGACCTGGTCGCAGAAGGATTATCCACTCATCGAGGTGGGTGTGCTGGAGCTCAACCGTAACCCGCTc > 2:844810/1‑85 (MQ=255) cATTCGACGTGACCAAGACCTGGTCGCAGAAGGATTATCCACTCATCGAGGTGGGTGTGCTGGAGCTCAACCGTAACCCGCTCAACTATTTTGCGGAGGTCGAGCAGGCCGCGTTCGGGCCGAGCAATATGGTGCCCGGCGTCGGTCttt < 1:1121560/150‑1 (MQ=255) aCCAAGACCTGGTCGCAGAAGGATTATCCACTCATCGAGGTGGGTGTGCTGGAGCTCAACCGTAACCCGCTCAACTATTTTGCGGAGGTCGAGCAGGCCGCGTTCGGGCCGAGCAATATGGTGCCCGGCGTCGGTCTTTCGCCGGACCGc > 1:2233/1‑150 (MQ=255) cAAGACCTGGTCGCAGAAGGATTATCCACTCATCGAGGTGGGTGTGCTGGAGCTCAACCGTAACCCGCTCAACTATTTTGCGGAGGTCGAGCAGGCCGCGTTCGGGCCGAGCAATATGGTGcc > 2:1160243/1‑123 (MQ=255) cAAGACCTGGTCGCAGAAGGATTATCCACTCATCGAGGTGGGTGTGCTGGAGCTCAACCGTAACCCGCTCAACTATTTTGCGGAGGTCGAGCAGGCCGCGTTCGGGCCGAGCAATATGGTGcc < 1:1160243/123‑1 (MQ=255) cAAGACCAGGGGGCAGACGGATTATCCACGCATCGAGGGCGGGGTGCTCGAGCTCAACCGGAACCCGCGCAACGCTTTGGCGGAGGGCGAGCAGGCCGCGTTCGGTCCAAGCAATATGGTGCCCGGCGTCGGTCTTTCCCCGGACCGCAt > 2:176051/1‑150 (MQ=255) gACCTGGTCGCAGAAGGATTATCCACTCATCGAGGTGGGTGTGCTGGAGCTCAACCGTAACCCGCTCAACTATTTTGCGGAGGTCGAGCAGGCCGCGTTCgg < 2:157123/102‑1 (MQ=255) gACCTGGTCGCAGAAGGATTATCCACTCATCGAGGTGGGTGTGCTGGAGCTCAACCGTAACCCGCTCAACTATTTTGCGGAGGTCGAGCAGGCCGCGTTCgg > 1:157123/1‑102 (MQ=255) ccTGGTCGCAGAAGGATTATCCACTCATCGAGGTGGGTGTGCTGGAGCTCAACCGTAACCCGCTCAACTATTTTGCGGAGGTCGAGCAGGCCGCGtt < 2:64116/97‑1 (MQ=255) ccTGGTCGCAGAAGGATTATCCACTCATCGAGGTGGGTGTGCTGGAGCTCAACCGTAACCCGCTCAACTATTTTGCGGAGGTCGAGCAGGCCGCGtt > 1:64116/1‑97 (MQ=255) ccTGGTCGCAGAAGGATTATCCACTCATCGAGGTGGGTGTGCTGGAGCTCAACCGTAACCCGCTCAACTATTTTGCGGAGGTCGAGCAGGCCGCGTTCGGGCCGAGCAATATGGTGCCCGGCGTCGGTCTTTCGCCGGACCGCAtgctgc < 2:436755/150‑1 (MQ=255) cTGGTCGCAGAAGGATTATCCACTCATCGAGGTGGGTGTGCTGGAGCTCAACCGTAACCCGCTCAACTATTTTGCGGAGGTCGAGCAGGCCGCGTTCGGGCCGAGCAATATGGTGCCCGGCGTCGGTCTTTCGCCGGACCGCATGCTGCa > 2:798845/1‑150 (MQ=255) tGGTCGCAGAAGGCTTATCCACTCATCGAGGTGGGTGTGCTGGAGCTCAACCGTAACCCGCTCAACTATTTTGCGGAGGTCGAGCAGGCCGCGTTCGGGCCGAGCAATATGGTGCCCGGCGTCGGTCTTTCGCCGGACCGCATGCTGCaa > 1:516149/1‑150 (MQ=255) gTCGCAGAAGGATTATCCACTCATCGAGGTGGGTGTGCTGGAGCTCAACCGTAACCCGCTCAACTATTTTGCGGAGGTCGAGCAGGCCGCGTTCGGGCCGAGCAATATGGTGCCCGGCGTCGGTCTTTCGCCGGACCGCATGCTGCAAgg > 1:412604/1‑150 (MQ=255) gCAGAAGGATTATCCACTCATCGAGGTGGGTGTGCTGGAGCTCAACCGTAACCCGCTCAACTATTTTGCGGAGGTCGAGCAGGCCGCGTTCGGGCCGAGaaa > 1:569882/1‑102 (MQ=255) gCAGAAGGATTATCCACTCATCGAGGTGGGTGTGCTGGAGCTCAACCGTAACCCGCTCAACTATTTTGCGGAGGTCGAGCAGGCCGCGTTCGGGCCGAGCaa < 2:569882/102‑1 (MQ=255) gCAGAAGGATTATCCACTCATCGAGGTGGGTGTGCTGGAGCTCAACCGTAACCCGCTCAACTATTTTGCGGAGGTCGAGCAGGCCGCGTTCGGGCCGAGCAATATGGTGCCCGGCGTCGGTCTTTCGCCGGACCGCATGCTGCAAGGcc < 1:157256/149‑1 (MQ=255) gCAGAAGGATTATCCACTCATCGAGGTGGGTGTGCTGGAGCTCAACCGTAACCCGCTCAACTATTTTGCGGAGGTCGAGCAGGCCGCGTTCGGGCCGAGCAATATGGTGCCCGGCGTCGGTCTTTCGCCGGACCGCATGCTGCAAGGcc > 2:157256/1‑149 (MQ=255) gCAGAAGGATTATCCACTCATCGAGGTGGGTGTGCTGGAGCTCAACCGTAACCCGCTCAACTATTTTGCGGAGGTCGAGCAGGCCGCGTTCGGGCCGAGCAATATGGTGCCCGGCGTCGGTCTTTCGCCGGACCGCATGCTGCAAGGCCg > 1:1100331/1‑150 (MQ=255) cAGAAGGATTATCCACTCATCGAGGTGGGTGTGCTGGAGCTCAACCGTAACCCGCTCAACTATTTTGCGGAGGTCGAGCAGGCCGCGTTCGGGCCGAGCAATATGGTGCCCGGCGTCGGTCTTTCGCCGGACTGCATGCTGCAAGGCCgt < 2:577100/150‑1 (MQ=255) aaGAAGGATTATCCACTCATCGAGGTGGGTGTGGTGGAGCTCAACCGGAACCCGCTCAACTATTTTGCGGAGGTCGAGCAGGCCGCGTTCGGGCCGAGCAATATGGTGCCCGGCGTCGGTCTTTCGCCGGACCGCATGCTGCAAGGCCgt < 2:484193/149‑1 (MQ=255) ttATCCACTCATCGAGGTGGGTGTGCTGGAGCTCAACTGACTCCCGCTCAACTATTTTGCGGAGGTCGAGCAGGCCGCGTTCGGGCCGAGCAATATGGTGCCCGGCGTCGGTCTTTCGCCGGACCGCATGCTGCAAGGCCGTGTATTCGc < 1:615511/150‑1 (MQ=255) | TACGCTCAGCGCGACCTCTTCGAGGCCATCGAGCGTGGCGACTACCCGCGCTGGACTGTCTGCATTCAGGTGATGAGCGAAGCCGAGGCTGCCAGCCGCGACGAGAACCCATTCGACGTGACCAAGACCTGGTCGCAGAAGGATTATCCACTCATCGAGGTGGGTGTGCTGGAGCTCAACCGTAACCCGCTCAACTATTTTGCGGAGGTCGAGCAGGCCGCGTTCGGGCCGAGCAATATGGTGCCCGGCGTCGGTCTTTCGCCGGACCGCATGCTGCAAGGCCGTGTATTCGC > NC_002947/565235‑565527 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |