Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 571,217 | G→C | 8.9% | K62N (AAG→AAC) | ssb → | single‑stranded DNA‑binding protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 571,217 | 0 | G | C | 8.9% | 164.6 / 5.7 | 54 | K62N (AAG→AAC) | ssb | single‑stranded DNA‑binding protein |
Reads supporting (aligned to +/- strand): ref base G (22/26); new base C (3/2); total (26/28) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.58e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
CTGTGGCCAGGATCCCGAAGTCCGCTACCTGCCCAACGGTAACGCCGTGACCAACCTGAGCCTGGCCACCAGCGAGCAGTGGACTGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGTGGCACCGTGTGTCGCTGTTCGGCAAGGTTGCCGAAATCGCTGGCGAATACCTGCGCAAGGGTTCGCAGTGCTACATCGAAGGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACCGAGATCATCGTCGATATCAACGGCACCATGCA > NC_002947/571070‑571357 | cTGTGGCCAGGATCCCGAAGTCCGCTACCTGCCCAACGGTAACGCCGTGACCAACCTGAGCCTGGCCACCAGCGAGCAGTGGACTGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGTGGCACCGTGTGTCGCTGTTCGGCAAGGt > 1:864874/1‑150 (MQ=255) tgGCCAGGATCCCGAAGTCCGCTACCTGCCCAACGGTAACGCCGTGACCAACCTGAGCCTGGCCACCAGCGAGCAGTGGACTGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGTGGCACCGTGTGTCGCTGTTCGGCAAGGTTGc > 2:552555/1‑150 (MQ=255) gCCAGGATCCCGAAGTCCGCTACCTGCCCAACGGTAACGCCGTGACCAACCTGAGCCTGGCCACCAGCGAGCAGTGGACTGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGTGGCACCGTGTGTCGCTGTTCGGCAAGGTTGCCg > 1:797562/1‑150 (MQ=255) cAGGATCCCGAAGTCCGCTACCTGCCCAACGGTAACGCCGTGACCAACCTGAGCCTGGCCACCAGCGAGCAGTGGACTGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGTGGCACCGTGTGTCGCTGTTCGGCAAGGTTGCCGaa > 2:629302/1‑150 (MQ=255) ggATCCCGAAGTCCGCTACCTGCCCAACGGTAACGCCGTGACCAACCTGAGCCTGGCCACCAGCGAGCAGTGGACTGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGTGGCACCGTGTGTCGCTGTTCGGCAACCTTGCCGaaca < 2:886466/150‑3 (MQ=255) cccGAAGTCCGCTACCTGCCCAACGGTAACGCCGTGACCAACCTGAGCCTGGCCACCAGCGAGCAGTGGACTGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGTGGCACCGTGTGTCGCTGTTCGGCAAGGTTGCCGAAATCGCt > 2:880732/1‑150 (MQ=255) cGAAGTCCGCTACCTGCCCAACGGTAACGCCGTGACCAACCTGAGCCTGGCCACCAGCGAGCAGTGGACTGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGTGGCACCGTGTGTCGCTGTTCGGCAAGGTTGCCGAAATCGCTgg < 1:110288/150‑1 (MQ=255) cGAAGTCCGCTACCTGCCCAACGGTAACGCCGTGACCAACCTGAGCCTGGCCACCAGCGAGCAGTGGACTGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGTGGCACCGTGTGTCGCTGTTCGGCAAGGTTGCCGAAATCGCTgg > 2:1178039/1‑150 (MQ=255) aGTCCGCTCCCTGCCCAACGGTAACGCCGTGACCAACCTGAGCCTGGCCACCAGAGGGCCGTCTACGGTCCAGCAGTCGGGCCAGAAGGTCGAGAGTACCGAGTGGCACCGGTCGTCGCTGTTCGGCAAGGTTGCCGAAATCGCTGGCGa < 1:1178039/150‑1 (MQ=255) gTCCGCTACCTACCCATCTGTATCGCCGTGACCAACCTGATCCTGGCTACCAGCGAGCAGTGAACTCACAACCAGTCGGGCCAGAAGGTCGAGCGTACCGAGTGGCACCGTGTGTCGCTGTTCTGCAAGTTTGCCGAAATCGCTGGCGaa < 2:468737/150‑1 (MQ=255) cGCTACCTGCCCAACGGTAACGCCGTGACCAACCTGAGCCTGGCCACCAGCGAGCAGTGGACTGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGTGGCACCGTGTGTCGCTGTTCGGCAAGGTTGCCGAAATCGCTGGCGAATAc > 1:461429/1‑150 (MQ=255) cccAACGGTAACGCCGTGACCAACCTGAGCCTGGCCACCAGCGAGCAGTGGACTGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGTGGCACCGTGTGTCGCTGTTCGGCAAGGTTGCCGAAATCGCTGGCGaa < 2:1040598/138‑1 (MQ=255) cccAACGGTAACGCCGTGACCAACCTGAGCCTGGCCACCAGCGAGCAGTGGACTGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGTGGCACCGTGTGTCGCTGTTCGGCAAGGTTGCCGAAATCGCTGGCGaa > 1:1040598/1‑138 (MQ=255) gTAACGCCGTGACCAACCTGAGCCTGGCCACCAGCGAGCAGTGGACTGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGTGGCACCGTGTGTCGCTGTTCGGCAAGGTTGCCGAAATCGCTGGCGAATACCTGCGCAAGGGTTCGc > 2:272261/1‑150 (MQ=255) aCGCCGTGACCAACCTGAGCCTGGCCACCAGCGAGCAGTGGACTGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGTGGCACCGTGTGTCGCTGTTCGGCAAGGTTGCCGAAATCGCTGGCGAATACCTGCGCAAGGGTTCGCAGt > 2:706122/1‑150 (MQ=255) aCGCCGTGACCAACCTGAGCCTGGCCACCAGCGAGCAGTGGACTGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGTGGCACCGTGTGTCGCTGTTCGGCAAGGTTGCCGAAATCGCTGGCGAATACCTGCGCAAGGGTTCGCAGt < 2:54023/150‑1 (MQ=255) ccGTGACCAACCTGAGCCTGGCCACCAGCGAGCAGTGGACTGACAAGCAGTCGGGCCAAAAGGTCGAGTGTACCGAGTGGCACCGTGTGTCGCTGTTCGGCAAGGTTGCCGAAATCGCTGGCGAATACCTGCGCAAGGGTTCGCAGTGCt < 2:342758/150‑1 (MQ=255) gTGACCAACCTGAGCCTGGCCACCAGCGAGCAGTGGACTGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGTGGCACCGTGTGTCGCTGTTCGGCAAGGTTGCCGAAATCGCTGGCGAATACCTGCGCAAGGGTTCGCAGTGCTAc < 1:1047692/150‑1 (MQ=255) aCCAACCTGAGCCTGGCCACCAGCGAGCAGTGGACTGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGTGGCACCGTGTGTCGCTGTTCGGCAAGGTTGCCGAAATCGCTGGCGAATACCTGCGCAAGGGTTCGCAGTg > 1:499987/1‑143 (MQ=255) aCCAACCTGAGCCTGGCCACCAGCGAGCAGTGGACTGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGTGGCACCGTGTGTCGCTGTTCGGCAAGGTTGCCGAAATCGCTGGCGAATACCTGCGCAAGGGTTCGCAGTg < 2:499987/143‑1 (MQ=255) aCCAACCTGAGCCTGGCCACCAGCGAGCAGTGGACTGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGTGGCACCGTGTGTCGCTGTTCGGCAAGGTTGCCGAAATCGCTGGCGAATACCTGCGCAAGGGTTCGCAGTGCTACATc > 2:1021385/1‑150 (MQ=255) aCCTGAGCCTGGCCACCAGCGAGCAGTGGACTGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGTGGCACCGTGTGTCGCTGTTCGGCAAGGTTGcc > 1:559388/1‑101 (MQ=255) aCCTGAGCCTGGCCACCAGCGAGCAGTGGACTGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGTGGCACCGTGTGTCGCTGTTCGGCAAGGTTGcc < 2:559388/101‑1 (MQ=255) cTGAGCCTGGCCACCAGCGAGCAGTGGACTGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGTGGCACCGTGTGTCGCTGTTCGGCAAGGTTGCCGAAATCGCTGGCGAACGCCTGAGCAAGTGTTCGCAGTGCTACATCGAAGGc < 1:285929/150‑1 (MQ=255) gAGCCTGGCCACCAGCGAGCAGTGGACTGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGTGGCACCGTGTGTCGCTGTTCGGCAAGGTTGCCGAAATCGCTGGCGAATACCTGCGCAAGGGTTCGCAGTGCTACATCGAAGGCaa < 2:398206/150‑1 (MQ=255) aGCCTGGCCACCAGCGAGCAGTGGACTGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGTGGCACCGTGTGTCGCTGTTCGGCAAGGTTGCCGAAATCGCTGGCGAATACCTGCGCAAGGGTTTGCAGTGCTACATCGAAGGCAAg < 2:797562/150‑1 (MQ=255) ggCCACCAGCGAGCAGTGGACTGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGTGGCACCGTGTGTCGCTGTTCGGCAAGGTTGCCGAAATCGCTGGCGAATACCTGCGCAAGGGTTCGAAGTGCTACATCCAAGGCAAGCGGCa > 2:672266/1‑150 (MQ=255) ccaGCGAGCAGTGGACTGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGTGGCACCGTGTGTCGCTGTTCGGCAAGGTTGCCGAAATCGCTGGCGAATACCTGCGCAAGGGTTCGCAGTGCTACATCGAAGGCAAGCTGCAGAccc > 2:382985/1‑150 (MQ=255) aGCGAGCAGTGGACTGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGTGGCACCGTGTGTCGCTGTTCGGCAAGGTTGCCGAAATCGCTGGCGAATACCTGCGCAAGGGTTCGCAGTGCTACATCGAAGGCAAGCTGCAGACCcgc < 1:552555/150‑1 (MQ=255) cAGTGGACTGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGTGGCACCGTGTGTCGCTGTTCGGCAAGGTTGCCGAAATCGCTGGCGAATACCTGCGCAAGGGTTCGCAGTGCTACATCGAAGGCAAGCTGCAGACCCGCGAGTgg < 2:549678/150‑1 (MQ=255) cTGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGTGGCACCGTGTGTCGCTGTTCGGCAAGGTTGCCGAAATCGCTGGCGAATACCTGCGCAAGGGTTCGCAGTGCTACATCGAAGGCAAGCTGCAGACCCGCGAGTGGGAAAAAg > 2:382611/1‑150 (MQ=255) tGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGTGGCACCGTGTGTCGCTGTTCGGCAAGGTTGCCGAAATCGCTGGCGAATACCTGCGCAAGGGTTCGCAGTGCTACATCGAAGGCAAGCTGCAGACCCGCGAGTGGGAAAAAGa < 1:706122/150‑1 (MQ=255) gACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGTGGCACCGTGTGTCGCTGTTCGGCAAGGTTGCCGAAATCGCTGGCGAATACCTGCGCAAGGGTTCGCAGTGCTACATCGAAGGCAAGCTGCAGACCCGCGAGTGGGAAAAAGAc < 1:382985/150‑1 (MQ=255) aCAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGTGGCACCGTGTGTCGCTGTTCGGCAAGGTTGCCGAAATCGCTGGCGAATACCTGCGCAAGGGTTCGCAGTGCTACATCGAAGGCAAGCTGc > 1:307554/1‑126 (MQ=255) aCAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGTGGCACCGTGTGTCGCTGTTCGGCAAGGTTGCCGAAATCGCTGGCGAATACCTGCGCAAGGGTTCGCAGTGCTACATCGAAGGCAAGCTGc < 2:307554/126‑1 (MQ=255) aCAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGTGGCACCGTGTGTCGCTGTTCGGCAAGGTTGCCGAAATCGCTGGCGAATACCTGCGCAAGGGTTCGCAGTGCTACATCGAAGGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACg > 1:1026958/1‑150 (MQ=255) aCAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGTGGCACCGGGTGTCGCTGTTCGGCAAGGTTGCCGAAATCGCTGGCGAATACCTGCGCAAGGGTTCGCAGTGCTACATCGAAGGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACg > 2:239811/1‑150 (MQ=255) cAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGTGGCACCGTGTGTCGCTGTTCGGCAAGGTTGCCGAAATCGCTGGCGAATACCTGCGCAAGGGTTCGCAGTGCTACATCGAAGGCAAGCTGCAGACCCTCGATTGGGAAAAAGACgg < 2:864874/150‑1 (MQ=255) cAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGTGGCACCGTGTGTCGCTGTTCGGCAAGGTTGCCGAAATCGCTGGCGAATACCTGCGCAAGGGTTCGCAGTGCTACATCGAAGGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACgg < 1:382611/150‑1 (MQ=255) aaGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGTGGCACCGTGTGTCGCTGTTCGGCAAGGTTGCCGAAATCGCTGGCGAATACCTGCGCAAGGGTTCGCAGTGCTACATCGAAGGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGc > 2:657707/1‑150 (MQ=255) gAAGGTCGAGCGTACCGAGTGGCACCGTGTGTCGCTGTTCGGCAAGGTTGCCGAAATCGCTGGCGAATACCTGCGCAAGGGTTCGCAGTGCTACATCGAAGGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTacac > 1:423973/1‑150 (MQ=255) ggTCGAGCGTACCGAGTGGCACCGTGTGTCGCTGTTCGGCAAGGTTGCCGAAATCGCTGGCGAATACCTGCGCAAGGGTTCGCAGTGCTACATCGAAGGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTAcaccac < 1:1021385/150‑1 (MQ=255) gTCGAGCGTACCGAGTGGCACCGTGTGTCGCTGTTCGGCAAGGTTGCCGAAATCGCTGGCGAATACCTGCGCAAGGGTTCGCAGTGCTACATCGAAGGCAAGCTGCAGACCCGCGAGTGCGAAAAAGACGGCATCAAGCGCTACaccacc < 1:629302/150‑1 (MQ=255) aGCGTACCGAGTGGCACCGTGTGTCGCTGTTCGGCAAGGTTGCCGAAATCGCTGGCGAATACCTGCGCAAGGGTTCGCAGTGCTACATCGAAGGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGTCATCAAGCGCTACACCACCgaga < 2:461429/150‑1 (MQ=255) aGCGTACCGAGTGGCACCGTGTGTCGCTGTTCGGCAAGGTTGCCGAAATCGCTGGCGAATACCTGCGCAAGGGTTCGCAGTGCTACATCGAAGGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACCgaga < 1:672266/150‑1 (MQ=255) tACCGAGTGGCACCGTGTGTCGCTGTTCGGACAAGTTGCCAAAATCCCTGTCGAATACCTGCGCAAGGGGTCGCAGCGCCCCACACCTCCCGACCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACCGAGatcat > 1:574986/1‑150 (MQ=255) ggcGCTGCTCGGCAACGTTGCCGAAATCGCGGGCGAATACCTGAGCAAGGGTTCGCAGTGCTACATCGAAGGCAAGCTGCAAACCCGCGAGTGAGAAAAAGACGGCATCAAGCGCTACACCACCGAGATCATCGTCGATATCAACGGCAc < 2:423973/148‑1 (MQ=255) cagcgatttCGGCAACCTTGCCGAAATCGCTGGCGAATACCTGCGCAAGGGTTCGCAGTGCTACATCGAAGGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACCGAGATAATCGTCGGTAACAATGGAAc > 2:670834/8‑150 (MQ=255) tCGCTGTTCGGCAAGGTTGCCGAAATCGCTGGCGAATACCTGCGCAAGGGTTCGCAGTGCTACATCGAAGGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACCGAGATCATCGTCGATATCAACGGCAcc > 2:115889/1‑150 (MQ=255) gcgatttCGGCAACCTTGCCGAACTCGCTGGCGAATACCTGCGCAAGGGTTCGCAGTGCTACATCGAAGGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACCGAGATCATCGTCGATATCAACGGCACCa > 1:1173933/6‑150 (MQ=255) gCTGTTCGGCAAGGTTGCCGAAATCGCTGGCGAATACCTGCGCAAGGGTTCGCAGTGCTACATCGAAGGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACCGAGATCATCGTCGATATCAACGGCACCAt < 1:638219/150‑1 (MQ=255) cTGTTCGGCAAGGTTGCCGAAATCGCTGGCGAATACCTGCGCAAGGGTTCGCAGTGCTACATCGAAGGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACCGAGATCATCGTCGATATCAACGGCACCATg < 1:115889/150‑1 (MQ=255) tGTTCGGCAAGGTTGCCGAAATCGCTGGCGAATACCTGCGCAAGGGTTCGCAGTGCTACATCGAAGGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACCGAGATCATCGTCGATATCAACGGCACCATGc < 1:880732/150‑1 (MQ=255) tttCGGCAACCTTGCCGAAATCGCTGGCGAATACCTGCGCAAGGGTTCGCAGTGCTACATCGAAGGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACCGAGATCATCGTCGAGATCAACGGCACCATGCa > 1:244702/2‑150 (MQ=255) | CTGTGGCCAGGATCCCGAAGTCCGCTACCTGCCCAACGGTAACGCCGTGACCAACCTGAGCCTGGCCACCAGCGAGCAGTGGACTGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGTGGCACCGTGTGTCGCTGTTCGGCAAGGTTGCCGAAATCGCTGGCGAATACCTGCGCAAGGGTTCGCAGTGCTACATCGAAGGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACCGAGATCATCGTCGATATCAACGGCACCATGCA > NC_002947/571070‑571357 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |