| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 619,388 | G→C | 5.7% | L205V (CTG→GTG) ‡ | pfeS‑I ← | histidine kinase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 619,388 | 0 | G | C | 5.7% | 222.9 / 4.0 | 70 | L205V (CTG→GTG) ‡ | pfeS‑I | histidine kinase |
| Reads supporting (aligned to +/- strand): ref base G (33/33); new base C (2/2); total (35/35) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.69e-01 | |||||||||||
GCGATGCGCAGCCGCGCCAGCGGCGTGCGCAATTCGTGAGACAGCGTGCGCAACAGCAGGCGCTGTTGCTCAAGGCTCTGGCGCAGGCGCCCGGCCATGTGCTCGAAGGCCTGAGCCAGCTCACCCAGCTCATCACGCCGCTCCTGCAGGGGCAGG‑GCGGGGCTGTCCAGATCATCGGCCCGCAGGGCGTCGGCGCGGTCGCGCAGGCGGTTCAGCGGCACGACAAGATGCCGGTATAGCGCAAGGCCTAGCAGCAGGGCCAGCAGTGCGGGGGCAACGCCATGCGTGACCACATGGG > NC_002947/619240‑619537 | gCGATGCGCAGCCGCGCCAGCGGCGTGCGCAATTCGTGAGACAGCGTGCGCAACAGCAGGCGCTGTTGCTCAAGGCTCTGGCGCAGGCGCCCGGCCATGTGCTCGAAGGCCTGAGCCAGCTCACCCAGCTCATCACGCCGCTCCTgcagg > 2:1093820/1‑150 (MQ=255) cGATGCGCAGCCGCGCCAGCGGCGTGCGCAATTCGTGAGACAGCGTGCGCAACAGCAGGCGCTGTTGCTCAAGGCTCTGGCGCAGGCGCCCGGCCATGTGCTCGAAGGCCTGAGCCAGCTCACCCAGCTCATCACGCCGCTCCTgcaggg < 1:117065/150‑1 (MQ=255) gATGCGCAGCCGCGCCAGCGGCGTGCGCAATTCGTGAGACAGCGTGCGCAACAGCAGGCGCTGTTGCTCAAGGCTCTGGCGCAGGCGCCCGGCCATGTGCTCGAAGGCCTGAGCCAGCTCACCCAGCTCATCACGCCGCTCCTgcagggg < 1:780868/150‑1 (MQ=255) gATGCGCAGCCGCGCCAGCGGCGTGCGCAATTCGTGAGACAGCGTGCGCAACAGCAGGCGCTGTTGCTCAAGGCTCTGGCGCAGGCGCCCGGCCATGTGCTCGAAGGCCTGAGCCAGATCACCCAGCTCATCACGCCGCTCCTgcagggg > 2:1057339/1‑150 (MQ=255) gcAGCCGCGCCAGCGGCGTGCGCAATTCGTGAGACAGCGTGCGCAACAGCAGGCGCTGTTGCTCAAGGCTCTGGCGCAGGCGCCCGGCCATGTGCTCGAAGGCCTGAGCCAGCTCACCCAGCTCATCACGCCGCTCCTgcaggg < 2:605311/144‑1 (MQ=255) gcAGCCGCGCCAGCGGCGTGCGCAATTCGTGAGACAGCGTGCGCAACAGCAGGCGCTGTTGCTCAAGGCTCTGGCGCAGGCGCCCGGCCATGTGCTCGAAGGCCTGAGCCAGCTCACCCAGCTCATCACGCCGCTCCTgcaggg > 1:605311/1‑144 (MQ=255) gCCGCGCCAGCGGCGTGCGCAATTCGTGAGACAGCGTGCGCAACAGCAGGCGCTGTTGCTCAGGGCTCTGGAGCAGGCGCCCGGCCATGTGCTCGAAGGCCTGAGCCAGCTCACCCAGCTCATCACGCCGCTCCTGCAGGGGCAGG‑GCgg > 1:629478/1‑150 (MQ=255) ccGCGCCAGCGGCGTGCGCAATTCGTGAGACAGCGTGCGCAACAGCAGGCGCTGTTGCTCAAGGCTCTGGCGCAGGCGCCCGGCCATGTGCTCGAAGGCCTGAGCCAGCTCACCCAGCTCATCACGCCGCTCCTGCAGGGGCAGG‑GCggg < 2:851839/150‑1 (MQ=255) ccGCGCCAGCGGCGTGCGCAATTCGTGAGACAGCGTGCGCAACAGCAGGCGCTGTTGCTCAAGGCTCTGGCGCAGGCGCCCGGCCATGTGCTCGAAGGCCTGAGCCAGCTCACCCAGCTCATCACGCCGCTCCTGCAGGGGCAGG‑GCggg < 1:595063/150‑1 (MQ=255) gcgcCAGCGGCGTGCGCAATTCGTGAGACAGCGTGCGCAACAGCAGGCGCTGTTGCTCAAGGCTCTGGCGCAGGCGCCCGGCCATGTGCTCGAAGGCCTGAGCCAGCTCACCCAGCTCATCACGCCGCTCCTGCAGGGGCAGG‑GCgggg < 1:715457/149‑1 (MQ=255) gcgcCAGCGGCGTGCGCAATTCGTGAGACAGCGTGCGCAACAGCAGGCGCTGTTGCTCAAGGCTCTGGCGCAGGCGCCCGGCCATGTGCTCGAAGGCCTGAGCCAGCTCACCCAGCTCATCACGCCGCTCCTGCAGGGGCAGG‑GCgggg > 2:715457/1‑149 (MQ=255) gcgcCAGCGGCGTGCGCAATTCGTGAGACAGCGTGCGCAACAGCAGGCGCTGTTGCTCAAGGCTCTGGCGCAGGCGCCCGGCCATGTGCTCGAAGGCCTGAGCCAGCTCACCCAGCTCATCACGCCGCTCCTGCAGGGGCAGG‑GCGGGGc > 1:14678/1‑150 (MQ=255) gcCAGCGGCGTGCGCAATTCGTGAGACAGCGTGCGCAACAGCAGGCGCTGTTGCTCAAGGCTCTGGCGCAGGCGCCCGGCCATGTGCTCGAAGGCCTGAGCCAGCTCACCCAGCTCATCACGCCGCTCCTGCAGGGGCAGG‑GCGGGGCTg < 2:593332/150‑1 (MQ=255) ccAGCGGCGTGCGCAATTCGTGAGACAGCGTGCGCAACAGCAGGCGCTGTTGCTCAAGGCTCTGGCGCAGGCGCCCGGCCATGTGCTCGAAGGCCTGAGCCAGCTCACCCAGCTCATCACGCCGCTCCTGCAGGGGCAGG‑GCGGGGCTGt > 2:1113134/1‑150 (MQ=255) cAGCGGCGTGCGCAATTCGTGAGACAGCGTGCGCAACAGCAGGCGCTGTTGCTCAAGGCTCTGGCGCAGGCGCCCGGCCATGTGCTCGAAGGCCTGAGCCAGCTCACCCAGCTCATCACGCCGCTCCTGCAGGGGCAGG‑GCGGGGCTGTc > 2:246428/1‑150 (MQ=255) cAGCGGCCTGCGCAATTCGTGAGACAGCGTGCGCAACAGCAGGCGCTGTTGCTCAGGGCTCTGGCGCAGGCGCCCGGCCATGTGCTCGAGGGCCTGAGCCAGCTCACCCAGCTCATCACGCCGCTCCTGTAGGGGCAGG‑GCGGGGCTGTc < 2:23899/150‑1 (MQ=255) aGCGGCGTGCGCAATTCGTGAGACAGCGTGCGCAACAGCAGGCGCTGTTGCTCAAGGCTCTGGCGCAGGCGCCCGGCCATGTGCTCGAAGGCCTGAGCCAGCTCACCCAGCTCATCACGCCGCTCCTGCAGGGGCAGG‑GCGGGGCTGTcc < 2:790103/150‑1 (MQ=255) gcggcgTGCGCAATTCGTGAGACAGCGTGCGCAACAGCAGGCGCTGTTGCTCAAGGCTCTGGCGCAGGCGCCCGGCCATGTGCTCGAAGGCCTGAGCCAGCTCACCCAGCTCATCACGCCGCTCCTGCAGGGGCAGG‑GCGGGGCTGTCCa < 1:1113134/150‑1 (MQ=255) ggcgTGCGCAATTCGTGAGACAGCGTGCGCAACAGCAGGCGCTGTTGCTCAAGGCTCTGGCGCAGGCGCCCGGCCATGTGCTCGAAGGCCTGAGCCAGCTCACCCAGCTCATCACGCCGCTCCTGCAGGGGCAGG‑GCGGGGCTGTCCAGa < 2:108525/150‑1 (MQ=255) ggcgTGCGCAATTCGTGAGACAGCGTGCGCAACAGCAGGCGCTGTTGCTCAAGGCTCTGGCGCAGGCGCCCGGCCATGTGCTCGAAGGCCTGAGCCAGCTCACCCAGCTCATCACGCCGCTCCTGCAGGGGCAGG‑GCGGGGCTGTCCAGa < 2:1123116/150‑1 (MQ=255) tGCGCAATTCGTGAGACAGCGTGCGCAACAGCAGGCGCTGTTGCTCAAGGCTCTGGCGCAGGCGCCCGGCCATGTGCTCGAAGGCCTGAGCCAGCTCACCCAGCTCATCACGCCGCTCCTGCAGGGGCAGG‑GCGGGGCTGTCCAGatcat > 2:149116/1‑150 (MQ=255) gcAATTCGTGAGACAGCGTGCGCAACAGCAGGCGCTGTTGCTCAAGGCTCTGGCGCAGGCGCCCGGCCATGTGCTCGAAGGCCTGAGCCAGCTCACCCAGCTCATCACGCCGCTCCTGCAGGGGCAGG‑GCGGGGCTGTCCAGataatctg > 2:479439/1‑148 (MQ=255) gTGAGACAGCGTGCGCAACAGCAGGCGCTGTTGCTCAAGGCTCTGGCGCAGGCGCCCGGCCATGTGCTCGAAGGCCTGAGCCAGCTCACCCAGCTCATCACGCCGCTCCTGCAGGGGCAGG‑GCGGGGCTGTCCAGATCATCGGCCCGCAg > 2:814418/1‑150 (MQ=255) gTGAGACAGCGTGCGCAACAGCAGGCGCTGTTGCTCAAGGCTCTGGCGCAGGCGCCCGGCCATGTGCTCGAAGGCCTGAGCCAGCTCACCCAGCTCATCACGCCGCTCCTGCAGGGGCAGG‑GCGGGGCTGTCCAGATCATCGGCCCGCAg < 1:468425/150‑1 (MQ=255) tGAGACAGCGTGCGCAACAGCAGGCGCTGTTGCTCAAGGCTCTGGCGCAGGCGCCCGGCCATGTGCTCGAAGGCCTGAGCCAGCTCACCCAGCTCATCACGCCGCTCCTGCAGGGGCAGG‑GCGGGGCTGTCCAGATCATCGGCCCGCAgg < 1:282306/150‑1 (MQ=255) agaacccGTGCGTAACAGCAGGCGCTGTTGCTCAAGGCTCTGGCGCAGGCGCCCGGCCATGTGCTCGAAGGCCTGAGCCAGCTCACCCAGCTCATCACGCCGCTCCTGCAGGGGCAGG‑GCGGGGCTGTCCAGATCATCGGCCCGCAGGGc > 2:599585/7‑150 (MQ=255) agaCAGCGTGCGCAACAGCAGGCGCTGTTGCTCAAGGCTCTGGCGCAGGCGCCCGGCCATGTGCTCGAAGGCCTGAGCCAGCTCACCCAGCTCATCACGCCGCTCCTGCAGGGGCAGG‑GCGGGGCTGTCCAGATCATCGGCCCGCAGGGc < 1:1093820/150‑1 (MQ=255) gcgcAACAGCAGGCGCTGTTGCTCAAGGCTCTGGCGCAGGCGCCCGGCCATGTGCTCGAAGGCCTGAGCCAGCTCACCCAGCTCATCACGCCGCTCCTGCAGGGGCAGG‑GCGGGGCTGTCCAGATCATCGGCCCGCAGGGCGTCGGcgcg < 1:246428/150‑1 (MQ=255) gcAACAGCAGGCGCTGTTGCTCAAGGCTCTGGCGCAGGCGCCCGGCCATGTGCTCGAAGGCCTGAGCCAGCTCAACCAGCTCATCACGCCGCTCCTGCAGGGGCAGG‑GCGGGGCTGTCCAGATCATCGGCCCGCAGGGCGTCGACGCGGt > 1:682676/1‑150 (MQ=255) aaCAGCAGGCGCTGTTGCTCAAGGCTCTGGCGCAGGCGCCCGGCCATGTGCTCGAAGGCCTGAGCCAGCTCACCCAGCTCATCACGCCGCTCCTGCAGGGGCAGG‑GCGGGGCTGTCCAGATCATCGGCCCGCAGGGCGTCGGCGCGGTcg > 2:1122620/1‑150 (MQ=255) gTTGCTCAAGGCTCTGGCGCAGGCGCCCGGCCATGTGCTCGAAGGCCTGAGCCAGCTCACCCAGCTCATCACGCCGCTCCTGCAGGGGCAGG‑GCGGGGCTGTCCAGATCATCGGCCCGCAGGGCGTCGGCGCGGTCGCGCAGGCGGTTCa < 1:534816/150‑1 (MQ=255) ttGCTCAAGGCTCTGGCGCAGGCGCCCGGCCATGTGCTCGAAGGCCTGAGCCAGCTCACCCAGCTCATCACGCCGCTCCTGCAGGGGCAGG‑GCGGGGCTGTCNAGATCATCGGCCCGCAGGGCGTCGGCGCGGTCGCGCAGGCGGTTCAg < 1:479439/150‑1 (MQ=255) ttGCTCAAGGCTCTGGCGCAGGCGCCCGGCCATGTGCTCGAAGGCCTGAGCCAGCTCACCCAGCTCATCACGCCGCTCCTGCAGGGGCAGG‑GCGGGGCTGTCCAGATCATCGGCCCGCAGGGCGTCGGCGCGGTCGCGCAGGCGGTTCAg < 2:308776/150‑1 (MQ=255) tGCGCAAGGCTCTGGCGCAGGCGCCCGGCCATGTGCTCGAAGGCCTGAGCCAGCTCACCCAGCTCATCACGCCGCTCCTGCAGGGGCAGG‑GCGGGGCTGTCCAGATCATCGGCCCGCAGGGCGTCGGCGCGGTCGCGCAGGCGGTTCAGc < 1:718441/150‑1 (MQ=255) cTCAAGGCTCTGGCGCAGGCGCCCGGCCATGTGCTCGAAGGCCTGAGCCAGCTCACCCAGCTCATCACGCCGCTCCTGCAGGGGCAGG‑GCGGGGCTGTCCAGATCATCGGCCCGCAGGGCGTCGGCGCGGTCGCGCAGGCGGTTCAGCgg > 2:723677/1‑150 (MQ=255) tCAAGGCTCTGGCGCAGGCGCCCGGCCATGTGCTCGAAGGCCTGAGCCAGCTCACCCAGCTCATCACGCCGCTCCTGCAGGGGCAGG‑GCgg < 1:410831/91‑1 (MQ=255) tCAAGGCTCTGGCGCAGGCGCCCGGCCATGTGCTCGAAGGCCTGAGCCAGCTCACCCAGCTCATCACGCCGCTCCTGCAGGGGCAGG‑GCgg > 2:410831/1‑91 (MQ=255) tCAAGGCTCTGGCGCAGGCGCCCGGCCATGTGCTCGAAGGCCTGAGCCAGCTCACCCAGCTCATCACGCCGCTCCTGCAGGGGCAGG‑GCGGGGCTGTCCAGATCATCGGCCCGCAGGGCGTCGGCGCGGTCGCGCAGGCGGTTCAGCGGc > 1:176701/1‑150 (MQ=255) tCAAGGCTCTGGCGCAGGCGCCCGGCCATGTGCTCGAAGGCCTGAGCCAGCTCACCCAGCTCATCACGCCGCTCCTGCAGGGGCAGG‑GCGGGGCTGTCCAGATCATCGGCCCGCAGGGCGTCGGCGCGGTCGCGCAGGCGGTTCAGCGGc > 1:996608/1‑150 (MQ=255) aaGGCTCTGGCGCAGGCGCCCGGCCATGTGCTCGAAGGCCTGAGCCAGCTCACCCAGCTCATCACGCCGCTCCTGCAGGGGCAGG‑GCggg > 1:1073373/1‑90 (MQ=255) aaGGCTCTGGCGCAGGCGCCCGGCCATGTGCTCGAAGGCCTGAGCCAGCTCACCCAGCTCATCACGCCGCTCCTGCAGGGGCAGG‑GCggg < 2:1073373/90‑1 (MQ=255) cgcAGGCGCCCGGCCATGTGCTCGAAGGCCTGAGCCAGCTCACCCAGCTCATCACGCCGCTCCTGCAGGGGCAGG‑GCGGGGCTGTCCAGATCATCGGCCCGCAGGGCGTCGGCGCGGTCGCGCAGGCGGTTCAGCGGCACGACAAGATGc < 1:1057339/150‑1 (MQ=255) ccGGCCATGTGCTCGAAGGCCTGAGCCAGCTCACCCAGCTCATCACGCCGCTCCTGCAGGGGCAGG‑GCGGGGCTGTCCAGATCATCGGCCCGCAGGGCGTCGGCGCGGTCGCGCAGGCGGTTCAGCGGCACGACAAGATGCCGGTATAgc > 1:1207491/1‑150 (MQ=255) ccGGCCATGTGCTCGAAGGCCTGAGCCAGCTCACCCAGCTCATCACGCCGCTCCTGCAGGGGCAGG‑GCGGGGCTGTCCAGATCATCGGCCCGCAGGGCGTCGGCGCGGTCGCGCAGGCGGTTCAGCGGCACGACAAGATGCCGGTATAgc < 2:14678/150‑1 (MQ=255) ggCCATGTGCTCGAAGGCCTGAGCCAGCTCACCCAGCTCATCACGCCGCTCCTGCCGGGGCAGG‑GCGGGGCTGTCCAGATCATCGGCCCGCAGGGCGTCGGCGCGGTCGCGCAGGCGGTTCAGCGGCACGACAAGATGCCGGTATAgcgc < 1:439795/150‑1 (MQ=255) aTGTGCTCGAAGGCCTGAGCCAGCTCACCCAGCTCATCACGCCGCTCCTGCAGGGGCAGG‑GCGGGGCTGTCCAGATCATCGGCCCGCAGGGCGTCGGCGCGGTCGCGCAGGCGGTTCAGCGGCACGACAAGATGCCGGTATAGCGCAAgg > 1:1200476/1‑150 (MQ=255) gtgCTCGAAGGCCTGAGCCAGCTCACCCAGCTCATCACGCCGCTCCTgcaggg > 1:165904/1‑53 (MQ=255) gtgCTCGAAGGCCTGAGCCAGCTCACCCAGCTCATCACGCCGCTCCTgcaggg < 2:165904/53‑1 (MQ=255) gAAGGCCTGAGCCAGCTCACCCAGCTCATCACGCCGCTCCTGCAGGGGCAGG‑GCGGGGCTGTCCAGATCATCGGCCCGCAGGGCGTCGGCGCGGTCGCGCAGGCGGTTCAGCGGCACGACAAGATGCCGGTATAGCGCAAGGCCTagcag > 1:468944/1‑150 (MQ=255) aaGGCCTGAGCCAGCTCACCCAGCTCATCACGCCGCTCCTGCAGGGGCAGG‑GCGGGGCTGTCCAGATCATCGGCCCGCAGGGCGTCGGCGCGGTCGCGCAGGCGGTTCAGCGGCACGACAAGATGCCGGTATAGCGCAAGGCCTagcagc < 1:599585/150‑1 (MQ=255) ccTGAGCCAGCTCACCCAGCTCATCACGCCGCTCCTGCAGGGGCAGG‑GCGGGGCTGTCCAGATCATCGGCCCGCAGGGCGTCGGCGCGGTCGCGCAGGc > 2:553215/1‑99 (MQ=255) ccTGAGCCAGCTCACCCAGCTCATCACGCCGCTCCTGCAGGGGCAGG‑GCGGGGCTGTCCAGATCATCGGCCCGCAGGGCGTCGGCGCGGTCGCGCAGGc < 1:553215/99‑1 (MQ=255) cTGAGCCAGCTCACCCAGCTCATCACGCCGCTCCTGCAGGGGCAGG‑GCGGGGCTGTCCAGATCATCGGCCCGCAGGGCGTCGGCGCGGTCGCGCAGGCGGTTCAGCGGCACGACaa > 1:973868/1‑116 (MQ=255) cTGAGCCAGCTCACCCAGCTCATCACGCCGCTCCTGCAGGGGCAGG‑GCGGGGCTGTCCAGATCATCGGCCCGCAGGGCGTCGGCGCGGTCGCGCAGGCGGTTCAGCGGCACGACaa < 2:973868/116‑1 (MQ=255) aGCCAGCTCACCCAGCTCATCACGCCGCTCCTGCAGGGGCAGG‑GCGGGGCTGTCCAGATCATCGGCCCGCAGGGCGTCGGCGCGGTCGCGCAGGCGGTTCAGCGGCACGACAAGATGCCGGTATAGCGCAAGGCCTAGCAGCAGGGCcag < 2:208942/150‑1 (MQ=255) ccAGCTAACCCAGCTCATCACGCCGCTCCTGCAGGGGCAGG‑GCGGGGCTGTCCAGATCATCGGCCCGCAGGGCGTCGGCGCGGTCGCGCAGGCGGTTCAGCGGCACGACAAGATGCCGGTATAGCGCAAGGCCTAGCAGCAGGGCcagca < 2:248075/150‑1 (MQ=255) gCTCACCCAGCTCATCACGCCGCTCCTGCAGGGGCAGG‑GCGGGGCTGTCGAGATCATAGGCCCGCAGTGCGTCGGCGCGGTCGCGCAGGCGGTTGAGCGGCACGGCAAGATGTCGGTGTAGCGCAAGGCCTAGCAGCACGGCcagcgtta > 2:935571/1‑146 (MQ=255) cACCCAGCTCATCACGCCGCTCCTGCAGGGGCAGG‑GCGGGGCTGTCCAGATCATCGGCCCGCAGGGCGTCGGCGCGGTCGCGCAGGCGGTTCAGCGGCACGACAAGATGCCGGTATAGCGCAAGGCCTAGCAGCAGGGCCAGCAGTGCgg < 2:993262/150‑1 (MQ=255) cACCCAGCTCATCACGCCGCTCCTGCAGGGGCAGG‑GCGGGGCTGTCCAGATCATCGGCCCGCAGGGCGTCGGCGCGGTCGCGCAGGCGGTTCAGCGGCACGACAAGATGCCGGTATAGCGCAAGGCCTAGCAGCAGGGCCAGCAGTGCgg < 1:814418/150‑1 (MQ=255) aCCCAGCTCATCACGCCGCTCCTGCAGGGGCAGG‑GCGGGGCTGTCCAGATCATCGGCCCGCAGGGCGTCGGCGCGGTCGCGCAGGCGGTTCAGCGGCACGACAAGATGCCGGTATAGCGCAAGGCCTAGCAGCAGGGCcagca > 2:358301/1‑143 (MQ=255) aCCCAGCTCATCACGCCGCTCCTGCAGGGGCAGG‑GCGGGGCTGTCCAGATCATCGGCCCGCAGGGCGTCGGCGCGGTCGCGCAGGCGGTTCAGCGGCACGACAAGATGCCGGTATAGCGCAAGGCCTAGCAGCAGGGCcagca < 1:358301/143‑1 (MQ=255) gatctggacagccCCGC‑CCTGCCCCTGCAGGAGCGGGGCTGTCCAGATCATCGGCCCGCAGGGCGTCGGCGCGGTCGCGCAGGCGGTTCAGCGGCACGACAAGATGCCGGTATAGCGCAAGGCCTAgcagca > 2:180222‑M1/14‑132 (MQ=255) gatctggacagccCCGC‑CCTGCCCCTGCAGGAGCGGGGCTGTCCAGATCATCGGCCCGCAGGGCGTCGGCGCGGTCGCGCAGGCGGTTCAGCGGCACGACAAGATGCCGGTATAGCGCAAGGCCTAgcagca < 1:180222‑M1/119‑1 (MQ=255) cAGCTCATCACGCCGCTCCTGCAGGGGCAGG‑GCGGGGCTGTCCAGATCATCGGCCCGCAGGGCGTCGGCGCGGTCGCGCAGGCGGTTCAGCGGCACGACAAGATGCCGGTATAGCGCAAGGCCTAGCAGCAGGGCCAGCAGTGCGGGGGc > 2:300124/1‑150 (MQ=255) tggacagccCCGC‑CCTGCCCCTGCAGGAGCGGGGCTGTCCAGATCATCGGCCCGCAGGGCGTCGGCGCGGTCGCGCAGGCGGTTCAGCGGCACGACAAGATGCCGGTATAGCGCAAGGCCTAGcagcag > 2:761380‑M1/10‑129 (MQ=255) tggacagccCCGC‑CCTGCCCCTGCAGGAGCGGGGCTGTCCAGATCATCGGCCCGCAGGGCGTCGGCGCGGTCGCGCAGGCGGTTCAGCGGCACGACAAGATGCCGGTATAGCGCAAGGCCTAGcagcag < 1:761380‑M1/120‑1 (MQ=255) cTCATCACGCCGCTCCTGCAGGGGCAGG‑GCGGGGCTGTCCAGATCATCGGCCCGCAGGGCGTCGGCGCGGTCGCGCAGGCGGTTCAGCGGCACGACAAGATGCCGGTATAGCGCAAGGCCTAGCAGCAGGGCcagca > 2:469202/1‑137 (MQ=255) cTCATCACGCCGCTCCTGCAGGGGCAGG‑GCGGGGCTGTCCAGATCATCGGCCCGCAGGGCGTCGGCGCGGTCGCGCAGGCGGTTCAGCGGCACGACAAGATGCCGGTATAGCGCAAGGCCTAGCAGCAGGGCcagca < 1:469202/137‑1 (MQ=255) cTCATCACGCCGCTCCTGCAGGGGCAGG‑GCGGGGCTGTCCAGATCATCGGCCCGCAGGGCGTCGGCGCGGTCGCGCAGGCGGTTCAGCGGCACGACAAGATGCCGGTATAGCGCAAGGCCTAGCAGCAGGGCCAGCAGTGCGGGGGCAAc > 2:1150102/1‑150 (MQ=255) tcaCGCCGCTCCTGCAGGGGCAGG‑GCGGGGCTGTCCAGATCATCGGCCCGCAGGGCGTCGGCGCGGTCGCGCAGGCGGTTCAGCGGCACGACAAGATGCCGGTATAGCGCAAGGCCTAGCAGCAGGGCCAGCAGTGCGGGGGCAACGCCa < 1:300124/150‑1 (MQ=255) tcaCGCCGCTCCTGCAGGGGCAGG‑GCGGGGCTGTCCAGATCATCGGCCCGCAGGGCGTCGGCGCGGTCGCGCAGGCGGTTCAGCGGCACGACAAGATGCCGGTATAGCGCAAGGCCTAGCAGCAGGGCCAGCAGTGCGGGGGCAACGCCa > 1:39018/1‑150 (MQ=255) caCGCCGCTCCTGCAGGGGCAGG‑GCGGGGCTGTCCAGATCATCGGCCCGCAGGGCGTCGGCGCGGTCGCGCAGGCGGTTCAGCGGCACGACAAGATGCCGGTATAGCGCAAGGCCTAGCAGCAGGGCCAGCAGTGCGGGGGCAACGCCAt > 2:985292/1‑150 (MQ=255) gccgcTCCTGCAGGGGCAGG‑GCGGGGCTGTCCAGATCATCGGCCCGCAGGGCGTCGGCGCGGTCGCGCAGGCGGTTCAGCGGCACGACAAGATGCCGGTATAGCGCAAGGCCTAGCAGCAGGGCCAGCAGTGCGGGGGCAACGCCATGCg > 1:843635/1‑150 (MQ=255) gccgcTCCTGCAGGGGCAGG‑GCGGGGCCGTCCAGATCATCGGCCCGCAGGGCGTCGGCGCGGTCGCGCAGGCGGTTCAGCGGCACGACAAGATGCCGGTATAgc > 1:823489/1‑104 (MQ=255) gccccTCCTGCAGGGGCAGG‑GCGGGGCTGTCCAGATCATCGGCCCGCAGGGCGTCGGCGCGGTCGCGCAGGCGGTTCAGCGGCACGACAAGATGCCGGTATAgc < 2:823489/104‑1 (MQ=255) GCTCCTGCAGGGGCAGG‑GCGGGGCTGTCCAGATCATCGGCCAGCAGCGCGTCGGCGCGGTCGCGCAGGCGGTTCATCCGCACGACAAGATGCCGGTATAGCGCAAGGCCTAGCAGCAGGGCCAGCAGTGCGGGGGCAACGCCATGCGTGa > 2:739458‑M1/1‑150 (MQ=255) CTCCTGCAGGGGCAGG‑GCGGGGCTGTCCAGATCATCGGCCCGCAGGGCGTCGGCGCGGTCGCGCAGGCGGTTCAGCGGCACGACAAGATGCCGGTATAGCGCAAGGCCTAGCAGCAGGGCCAGCAGTGCGGGGGCAACGCCATGCGTGAc > 1:135918‑M1/1‑150 (MQ=255) tCCTGCAGGGGCAGG‑GCGGGGCTGTCCAGATCATCGGCCCGCAGGGCGTCGGCGCGGTCGCGCAGGCGGTTCAGCGGCACGACAAGATGCCGGTATAGCGCAAGGCCTAGCAGCAGGGCCAGCAGTGCGGGGGCAACGCCATGCGTGAcc > 1:20614/1‑150 (MQ=255) gcaggggcagg‑gCGGGGCTGTCCAGATCATCGGCCCGCAGGGCGTCGGCGCGGTCGCGCAGGCGGTTCAGCGGCACGACAAGATGCCGGTATAGCGCAAGGCCTAGCAGCAGGGCCAGCAGTGCGGGGGCAACGCCATGCGTGACCACAt < 2:996608/150‑1 (MQ=255) aggggcagg‑gCGGGGCTGTCCAGATCATCGGCCCGCAGGGCGTCGGCGCGGt > 1:1207970/1‑52 (MQ=255) aggggcagg‑gCGGGGCTGTCCAGATCATCGGCCCGCAGGGCGTCGGCGCGGt < 2:1207970/52‑1 (MQ=255) aggggcagg‑gCGGGGCTGTCCAGATCATCGGCCCGCAGGGCGTCGGCGCGGTCGCGCAGGCGGTTCAGCGGCACGACAAGATGCCGGTATAGCGCAAGGCCTAGCAGCAGGGCCAGCAGTGCGGGGGCAACGCCATGCGTGACCACATgg < 2:475978/150‑1 (MQ=255) aggggcagg‑gCGGGGCTGTCCAGATCATCGGCCCGCAGGGCGTCGACGCGGTCGCGCAGGCGGTTCAGCGGCACGACAAGATGCCGGTATAGCGCAAGGCCTAGCAGCAGGGCCAGCAGTGCGGGGGCAACGCCATGCGTGACCACATgg < 2:682676/150‑1 (MQ=255) ggggcagg‑gCGGGGCTGTCCAGATCATCGGCCCGCAGGGCGTCGGCGCGGTCGCGCAGGCGGTTCAGCGGCACGACAAGATGCCGGTATAGCGCAAGGCCTAGCAGCAGGGCCAGCAGTGCGGGGGCAACGCCATGCGTGACCACATggg > 1:636200/1‑150 (MQ=255) | GCGATGCGCAGCCGCGCCAGCGGCGTGCGCAATTCGTGAGACAGCGTGCGCAACAGCAGGCGCTGTTGCTCAAGGCTCTGGCGCAGGCGCCCGGCCATGTGCTCGAAGGCCTGAGCCAGCTCACCCAGCTCATCACGCCGCTCCTGCAGGGGCAGG‑GCGGGGCTGTCCAGATCATCGGCCCGCAGGGCGTCGGCGCGGTCGCGCAGGCGGTTCAGCGGCACGACAAGATGCCGGTATAGCGCAAGGCCTAGCAGCAGGGCCAGCAGTGCGGGGGCAACGCCATGCGTGACCACATGGG > NC_002947/619240‑619537 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |