Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 671,784 T→A 8.2% L279Q (CTG→CAG)  PP_0573 → hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_002947671,7840TA 8.2% 176.8 / 2.6 59L279Q (CTG→CAG) PP_0573hypothetical protein
Reads supporting (aligned to +/- strand):  ref base T (28/26);  new base A (2/3);  total (30/29)
Fisher's exact test for biased strand distribution p-value = 6.71e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

CCCAGCTGACCGTGCATGCGCGGCGCAAGCAGCTCAGCGCCGCTGTGACCGTGGCCGACTCCAGCCGTGATGCTGCACAGGCCCTGATCACCGTAGCCAGCAATGCCCAGACCCGCCATGGCGAACGCGTCACGGCCAGCTGGCTGCTGCCCCCTGGCAATGACCGGGTCTATTACCAGCGCCTCGATTACAGCCAGTACCTGGACGCCGCCGGTAGCCAACTGCTGCTGTCGGCGTCGCGCTACCGCAGCGAGCCCGGCACGCGCATACGTTTGGACGATGGCC  >  NC_002947/671640‑671924
                                                                                                                                                |                                                                                                                                            
cccAGCTGACCGTGCATGCGCGGCGCAAGCAGCTCAGCGCCGCTGTGACCGTGGCCGACTCCAGCCGTGATGCTGCACAGGCCCTGATCACCGTAGCCAGCAATGCCCAGACCCGCCATGGCGAACGCGTCACGGCCAGCTGGCtgctgc                                                                                                                                         >  2:454537/1‑150 (MQ=255)
    gCTGACCGTGCATGCGCGGCGCAAGCAGCTCAGCGCCGCTGTGACCGTGGCCGACTCCAGCCGTGATGCTGCACAGGCCCTGATCACCGTAGCCAGCAATGCCCAGACCCGCCATGGCGAACGCGTCACGGCCAGCTGGCTGCTGccccc                                                                                                                                     >  1:1059934/1‑150 (MQ=255)
     cTGACCGTGCATGCGCGGCGCAAGCAGCTCAGCGCCGCTGTGACCGTGGCCGACTCCAGCCGTGATGCTGCACAGGCCCTGATCACCGTAGCCAGCAATGCCCAGACCCGCCATGGCGAACGCGTCACGGCCAGCTGGCTGCTGCCCCCt                                                                                                                                    <  2:483972/150‑1 (MQ=255)
       gACCGTGCATGCGCGGCGCAAGCAGCTCAGCGCCGCTGTGACCGTGGCCGACTCCAGCCGTGATGCTGCACAGGCCCTGATCACCGTAGCCAGCAATGCCCAGACCCGCCATGGCGAACGCGTCACGGCCAGCTGGCTGCTGCCCCCTgg                                                                                                                                  <  1:686180/150‑1 (MQ=255)
       gACCGTGCATGCGCGGCGCAAGCAGCTCAGCGCCGCTGTGACCGTGGCCGACTCCAGCCGTGATGCTGCACAGGCCCTGATCACCGTAGCCAGCAATGCCCAGACCCGCCATGGCGAACGCGTCACGGCCAGCTGGCTGCTGCCCCCTgg                                                                                                                                  <  1:454537/150‑1 (MQ=255)
          cGTGCATGCGCGGCGCAAGCAGCTCAGCGCCGCTGTGACCGTGGCCGACTCCAGCCGTGATGCTGCACAGGCCCTGATCACCGTAGCCAGCAATGCCCAGACCCGCCATGGCGAACGCGTCACGGCCAGCTGGCTGCTGCCCCCt                                                                                                                                    >  1:1133163/1‑145 (MQ=255)
          cGTGCATGCGCGGCGCAAGCAGCTCAGCGCCGCTGTGACCGTGGCCGACTCCAGCCGTGATGCTGCACAGGCCCTGATCACCGTAGCCAGCAATGCCCAGACCCGCCATGGCGAACGCGTCACGGCCAGCTGGCTGCTGCCCCCt                                                                                                                                    <  2:1133163/145‑1 (MQ=255)
             gCATGCGCGGCGCAAGCAGCTCAGCGCCGCTGTGACCGTGGCCGACTCCAGCCGTGATGCTGCACAGGCCCTGATCACCGTAGCCAGCAATGCCCAGACCCGCCATGGCGAACGCGTCACGGCCAGCTGGCTGCTGCCCCCTGGCAATGa                                                                                                                            >  1:1037710/1‑150 (MQ=255)
                           agcagcTCAGCGCCGCTGTGACCGTGGCCGACTCCAGCCGTGATGCTGCACAGGCCCTGATCACCGTAGCCAGCAATGCCCAGACCCGCCATGGCGAACGCGTCACGGCCAGCTGGCTGCTGCCCCCTGGCAATGACCGGGTCTATTAcc                                                                                                              >  2:1062199/1‑150 (MQ=255)
                            gcagcTCAGCGCCGCTGTGACCGTGGCCGACTCCAGCCGTGATGCTGCACAGGCCCTGATCACCGTAGCCAGCAATGCCCAGACCCGCCATGGCGAACGCGTCACGGCCAGCTGGCTGCTGCCCCCTGGCAATGACCGGGTCTATTACCa                                                                                                             >  2:1099068/1‑150 (MQ=255)
                                cTCAGCGCCGCTGTGACCGTGGCCGACTCCAGCCGTGATGCTGCACAGGCCCTGATCACCCTAGCCAGCAATGCCCAGACCCGCCATGGCGAACGCGTCACGGCCAGCTGGCTGCTGCCCCCTGGCCATGACCGGGTCTATTACCAgcgc                                                                                                         >  2:292625/1‑150 (MQ=255)
                                 tCAGCGCCGCTGTGACCGTGGCCGACTCCAGCCGTGATGCTGCACAGGCCCTGATCACCGTAGCCAGCAATGCCCAGACCCGCCATGGCGAACGCGTCACGGCCAGCTGGCTGCTGCCCCCTGGCAATGACCGGGTCTATTACCAGCGcc                                                                                                        >  1:820834/1‑150 (MQ=255)
                                    gcgcCGCTGTGACCGTGGCCGACTCCAGCCGTGATGCTGCACAGGCCCTGATCACCGTAGCCAGCAATGCCCAGACCCGCCATGGCGAACGCGTCACGGCCAGCTGGCTGCTGCCCCCTGGCAATGACCGGGTCTATTACCAGCGCCTCg                                                                                                     >  2:1087842/1‑150 (MQ=255)
                                     cgccgcTGTGACCGTGGCCGACTCCAGCCGTGATGCTGCACAGGCCCTGATCACCGTAGCCAGCAATGCCCAGACCCGCCATGGCGAACGCGTCACGGCCAGCTGGCTGCTGCCCCCTGGCAATGACCGGGTCTATTACCAGCGCCTCGa                                                                                                    <  1:856322/150‑1 (MQ=255)
                                          cTGTGACCGTGGCCGACTCCAGCCGTGATGCTGCACAGGCCCTGATCACCGTAGCCAGCAATGCCCAGACCCGCCATGGCGAACGCGTCACGGCCAGCTGGCTGCTGCCCCCTGGCAATGACCGGGTCTATTACCAGCGCCTCGATTACa                                                                                               <  1:277741/150‑1 (MQ=255)
                                           tgtgACCGTGGCCGACTCCAGCCGTGATGCTGCACAGGCCCTGATCACCGTAGCCAGCAATGCCCAGACCCGCCATGGCGAACGCGTCACGGCCAGCTGGCTGCTGCCCCCTGGCAATGACCGGGTCTATTACCAGCGCCTCGATTACAg                                                                                              >  2:713862/1‑150 (MQ=255)
                                            gtgACCGTGGCCGACTCCAGCCGTGATGCTGCACAGGCCCTGATCACCGTAGCCAGCAATGCCCAGACCCGCCATGGCGAACGCGTCACGGCCAGCTGGCTGCTGCCCCCTGGCAATGACCGGGTCTATTACCAGCGCCTCGATTACAGc                                                                                             <  1:1087842/150‑1 (MQ=255)
                                               aCCGTGGCCGACTCCAGCCGTGATGCTGCACAGGCCCTGATCACCGTAGCCAGCAATGCCCAGACCCGCCATGGCGAACGCGTCACGGCCAGCTGGCTGCTGcccc                                                                                                                                      >  1:427751/1‑106 (MQ=255)
                                               aCCGTGGCCGACTCCAGCCGTGATGCTGCACAGGCCCTGATCACCGTAGCCAGCAATGCCCAGACCCGCCATGGCGAACGCGTCACGGCCAGCTGGCTGCTGcccc                                                                                                                                      <  2:427751/106‑1 (MQ=255)
                                                 cGTGGCCGACTCCAGCCGTGATGCTGCACAGGCCCTGATCACCGTAGCCAGCAATGCCCAGACCCGCCATGGCGAACGCGTCACGGCCAGCTGGCTGCTGCCCCCTGGCAATGACCGGGTCTATTACCAGCGCCTCGATTACAGCCAGTa                                                                                        <  1:657690/150‑1 (MQ=255)
                                                  gTGGCCGACTCCAGCCGTGATGCTGCACAGGCCCTGATCACCGTAGCCAGCAATGCCCAGACCCGCCATGGCGAACGCGTCACGGCCAGCTGGCTGCTGCCCCCTgg                                                                                                                                  <  2:770009/107‑1 (MQ=255)
                                                  gTGGCCGACTCCAGCCGTGATGCTGCACAGGCCCTGATCACCGTAGCCAGCAATGCCCAGACCCGCCATGGCGAACGCGTCACGGCCAGCTGGCTGCTGCCCCCTgg                                                                                                                                  >  1:770009/1‑107 (MQ=255)
                                                  gTGGCCGACTCCAGCCGTGATGCTGCACAGGCCCTGATCACCGTAGCCAGCAATGCCCAGACCCGCCATGGCGAACGCGTCACGGCCAGCTGGCTGCTGCCCCCTGGCAATGACCgg                                                                                                                        >  2:1174145/1‑117 (MQ=255)
                                                  gTGGCCGACTCCAGCCGTGATGCTGCACAGGCCCTGATCACCGTAGCCAGCAATGCCCAGACCCGCCATGGCGAACGCGTCACGGCCAGCTGGCTGCTGCCCCCTGGCAATGACCgg                                                                                                                        <  1:1174145/117‑1 (MQ=255)
                                                       cGACTCCAGCCGTGATGCTGCACAGGCCCTGATCACCGTAGCCAGCAATGCCCAGACCCGCCATGGCGAACGCGTCACGGCCAGCTGGCTGCTGCCCCCTGGCAATGACCGGGTCTATTACCAGCGCCTCGATTACAGCCAGTACCTGGa                                                                                  >  2:807693/1‑150 (MQ=255)
                                                        gACTCCAGCCGTGATGATGAACAGGACCTGATCACTGTGGCCAGCTGTGCCCAGACCCGCCATGGCGAACGCGTCACGGCCAGCTGGCTGCTGCCCCCTGGCAATGACCGGGTCTATTACCAGCGCCTCGATTACAGCCAGTACCTGGAc                                                                                 <  2:1037710/150‑1 (MQ=255)
                                                                    gATGCTGCACAGGCCCTGATCACCGTAGCCAGCAATGCCCAGACCCGCCATGGCGAACGCGTCACGGCCAGCTGGCTGCTGCCCCCTGGCAATGACCGGGTCTATTACCAGCGCCTCGATTACAGCCAGTACCTGGACGCCGCCgg                                                                         <  1:489434/146‑1 (MQ=255)
                                                                    gATGCTGCACAGGCCCTGATCACCGTAGCCAGCAATGCCCAGACCCGCCATGGCGAACGCGTCACGGCCAGCTGGCTGCTGCCCCCTGGCAATGACCGGGTCTATTACCAGCGCCTCGATTACAGCCAGTACCTGGACGCCGCCgg                                                                         >  2:489434/1‑146 (MQ=255)
                                                                       gctgcACAGGCCCTGATCACCGTAGCCAGCAATGCCCAGACCCGCCATGGCGAACGCGTCACGGCCAGCTGGCTGCTGCCCCCTGGCAATGACCGGGTCTATTACCAGCGCCTCGATTACAGCCAGTACCTGGACGCCGCCGGTAGCCaa                                                                  <  1:897598/150‑1 (MQ=255)
                                                                       gctgcACAGGCCCTGATCACCGTAGCCAGCAATGCCCAGACCCGCCATGGCGAACGCGTCACGGCCAGCTGGCTGCTGCCCCCTGGCAATGACCGGGTCTATTACCAGCGCCTCGATTACAGCCAGTACCTGGACGCCGCCGGTAGCCaa                                                                  >  1:757459/1‑150 (MQ=255)
                                                                         tgcACAGGCCCTGATCACCGTAGCCAGCAATGCCCAGACCCGCCATGGCGAACGCGTCACGGCCAGCTGGCTGCTGCCCCCTGGCAATGACCGGGTCTATTACCAGCGCCTCGATTACAGCCAGTACCTGGACGCCGCCGGTAGCCAAct                                                                <  2:820834/150‑1 (MQ=255)
                                                                            acaGGCCCTGATCACCGTAGCCAGCAATGCCCAGACCCGCCATGGCGAACGCGTCACGGCCAGCTGGCTGCTGCCCCCTGGCAATGACCGGGTCTATTACCAGCGCCTCGATTACAGCCAGTACCTGGACGCCGCCGGTAGCCAActgct                                                             <  1:1062199/150‑1 (MQ=255)
                                                                             caGGCCCTGATCACCGTAGCCAGCAATGCCCAGACCCGCCATGGCGAACGCGTCACGGCCAGCTGGCTGCTGCCCCCTGGCAATGACCGGGTCTATTACCAGCGCCTCGATTACAGCCAGTACCTGGACGCCGCCGGTAGCCAActgctg                                                            <  1:1099068/150‑1 (MQ=255)
                                                                                   cTGATCACCGTAGCCAGCAATGCCCAGACCCGCCATGGCGAACGCGTCACGGCCAGCTGGCTGCTGCCCCCTGGCAATGACCGGGTCTATTACCAGCGCCTCGATTACAGCCAGTACCTGGACGCCGCCGGTAGCCAACTGCTGCTGTCg                                                      >  1:5233/1‑150 (MQ=255)
                                                                                    tGATCACCGTAGCCAGCAATGCACAGACCCGCCATGGCGAACGCGTCACGGCCAGCTGGCTGCTGCCCCCTGGCAATGACCGGGTCTATTACCAGCGCCTCGATTACAGCCAGTACCTGGACGCCGCCGGTAGCCAACTGCTGCTGTCgg                                                     >  2:833614/1‑150 (MQ=255)
                                                                                          ccGTAGCCAGCAATGCCCAGACCCGCCATGGCGAACGCGTCACGGCCAGCTGGCTGCTGCCCCCTGGCAATGACCGGGTCTATTACCAGCGCCTCGATTACAGCCAGTACCTGGACGCCGCCGGTAGCCAACTGCTGCTGTCGGCGTcgc                                               >  1:122572/1‑150 (MQ=255)
                                                                                          ccGTAGCCACCCATGCCCAGACCGGCCATGGCTAACGCGTCACGTCGAGCTGGCTGCTGCCCCCTGGCAATTACCGTGTCTATTACCAGCACCTCGCTTACAGCGAGTACCTTGACGACGTCCGTAGCCAACTGCTGCTGTCGGCGTcgc                                               <  2:241189/150‑1 (MQ=255)
                                                                                           cGTAGCCAGCAATGCCCAGACCCGCCATGGCGAACGCGTCACGGCCAGCTGGCTGCTGCCCCCTGGCAATGACCGGGTCTATTACCAGCGCCTCGATTACAGCCAGTACCTGGACGCCGCCGGTAGCCAACTGCTGCTGTCGGCGTcgcg                                              >  2:1105989/1‑150 (MQ=255)
                                                                                             tAGCCAGCAATGCCCAGACCCGCCATGGCGAACGCGTCACGGCCAGCCGCCTGCGGCCCCCTGGCAATGACCGGGTCTATTACCAGCGCCTCGATTACAGCCAGTACCTGGACGCCGCCGGTAGCCAACTGCTGCTGTCGGCGTCGCGCt                                            <  1:1168175/150‑1 (MQ=255)
                                                                                                  aGCAATGCCCAGACCCGCCATGGCGAACGCGTCACGGCCAGCTGGCTNCTGCCCCCTGGCAATGACCGGGTCTAATACCAGCGCCTCGATTACAGCCAGTACCTGGACGCCGCCGGTAGCCAGCTGCTGCTGTCGGCGTCGCGCAACCGc                                       >  1:358830/1‑150 (MQ=255)
                                                                                                  aGCAATGCCCAGACCCGCCATGGCGAACGCGTCACGGCCAGCTGGCTGCTGCCCCCTGGCAATGACCGGGTCTATTACCAGCGCCTCGATTACAGCCAGTACCTGGACGCCGCCGGTAGCCAACTGCTGCTGTCGGCGTCGCGCTACCGc                                       >  2:1109790/1‑150 (MQ=255)
                                                                                                  aGCAATGCCCAGACCCGCCATGGCGAACGCGTCACGGCCAGCTGGCTGCTGCCCCCTGGCAATGACCGGGTCTATTACCAGCGCCTCGATTACAGCCAGTACCTGGACGCCGCCGATAGCCAACTGCTGCTGTCg                                                      <  1:114393/135‑1 (MQ=255)
                                                                                                  aGCAATGCCCAGACCCGCCATGGCGAACGCGTCACGGCCAGCTGGCTGCTGCCCCCTGGCAATGACCGGGTCTATTACCAGCGCCTCGATTACAGCCAGTACCTGGACGCCGCCGATAGCCAACTGCTGCTGTCg                                                      >  2:114393/1‑135 (MQ=255)
                                                                                                    cAATGCCCAGACCCGCCATGGCGAACGCGTCACGGCCAGCTGGCTGCTGCCCCCTGGCAATGACCGGGTCTATTACCAGCGCCTCGATTACAGCCAGTACCTGGACGCCGCCGGTAGCCAACTGCTGCTGTCGGCGTCGCGCTACCGCAg                                     >  1:227165/1‑150 (MQ=255)
                                                                                                          ccAGACCCGCCATGGCGAACGCGTCACGGCCAGCTGGCTGCTGCCCCCTGGCAATGACCGGGTCTATTACCAGCGCCTCGATTACAGCCAGTACCTGGACGCCGCCGGTAGCCAACTGCTGCTGTCGGCGTCGCGCTACCGCAGCGAGcc                               >  1:908205/1‑150 (MQ=255)
                                                                                                                     aTGGCGAACGCGTCACGGCCAGCTGGCTGCTGCCCCCTGGCAATGACCGGGTCTATTACCAGCGCCTCGATTACAGCCAGTACCTGGAc                                                                                 >  2:839308/1‑89 (MQ=255)
                                                                                                                     aTGGCGAACGCGTCACGGCCAGCTGGCTGCTGCCCCCTGGCAATGACCGGGTCTATTACCAGCGCCTCGATTACAGCCAGTACCTGGAc                                                                                 <  1:839308/89‑1 (MQ=255)
                                                                                                                     aTGGCGAACGCGTCACGGCCAGCTGGCTGCTGCCCCCTGGCAATGACCGGGTCTATTACCAGCGCCTCGATTACAGCCAGTACCTGGACGCCGCCGGTAGCCAACTGCTGCTGTCGGCGTCGCGGTACCGCAGCGAGCCCGGCACGCGCa                    >  1:469748/1‑150 (MQ=255)
                                                                                                                      aatagacccggtcattGCCAGGGGGCAGCAGCCAGCTGGCAATGACCGGGTCTATTACCAGCGCCTCGATTACAGCCAGTACCTGGACGCCGCCGGTAGCCAActgctgc                                                           >  1:17258‑M1/17‑110 (MQ=255)
                                                                                                                      aatagacccggtcattGCCAGGGGGCAGCAGCCAGCTGGCAATGACCGGGTCTATTACCAGCGCCTCGATTACAGCCAGTACCTGGACGCCGCCGGTAGCCAActgctgc                                                           <  2:17258‑M1/94‑1 (MQ=255)
                                                                                                                          gAACGCGTCACGGCCAGCTGGCTGCTGCCCCCTGGCAATGACCGGGTCTATTACCAGCGCCTCGATTACAGCCAGTACCTGGACGCCGCCGGTAGCCAACTGCTGCTGTCGGCGTCGCGCTACCGCAGCGAGCCCGGCACGCGCATACGt               <  2:704871/150‑1 (MQ=255)
                                                                                                                           acccggtcattGCCAGGGGGCAGCAGCCAGCTGGCAATGCCCGGGTCTATTACCAGCGCCTCGATTACAGCCAGTACCTGGACGCCGCCGGTAGCCAACTGCTGCTGTCGGCGTCGCGCTACCGCAGCGAGCCCGGCAcgc                       >  1:601592‑M1/12‑141 (MQ=255)
                                                                                                                           acccggtcattGCCAGGGGGCAGCAGCCAGCTGGCAATGACCGGGTCTATTACCAGCGCCTCGATTACAGCCAGTACCTGGACGCCGCCGGTAGCCAACTGCTGCTGTCGGCGTCGCGCTACCGCAGCGAGCCCGGCAcgc                       <  2:601592‑M1/130‑1 (MQ=255)
                                                                                                                               cgTCACGGCCAGCTGGCTGCTGCCCCCTGGCAATGACCGGGTCTATTACCAGCGCCTCGATTACAGCCAGTACCTGGACGCCGCCGGTAGCCAACTGCTGCTGTCGGCGTCGCGCTACCGCAGCGAGCCCGGCACGCGCATACGTTTGGa          <  1:943673/150‑1 (MQ=255)
                                                                                                                                 tcattGCCAGGGGGCAGCAGCCAGCTGGCAATGAGCGGGTCTATTACCAGCGCAGCGATTACAGCCAGTAGCTGGACGCCGCCGGTAGCCAACTGCTGCTGTCGGCGTTGCGCTACCGCAGCGGGCCCGGCACGCGCATACGTTTGGACg        <  2:367181‑M1/145‑1 (MQ=255)
                                                                                                                                 tCACGGCCAGCTGGCTGCTGCCCCCTGGCAATGACCGGGTCTATTACCAGCGCCTCGATTACAGCCAGTACCTGGACGCCGCCGGTa                                                                       >  2:717393/1‑87 (MQ=255)
                                                                                                                                 tCACGGCCAGCTGGCTGCTGCCCCCTGGCAATGACCGGGTCTATTACCAGCGCCTCGATTACAGCCAGTACCTGGACGCCGCCGGTa                                                                       <  1:717393/87‑1 (MQ=255)
                                                                                                                                 tCACGGCCAGCTGGCTGCTGCCCCCTGGCAATGACCGGGTCTATTACCAGCGCCTCGATTACAGCCAGTACCTGGACGCCGCCGGTAGCCAACTGCTGCTGTCGGCGTCGCGCTACCGCAGCGAGCCCGGCACGCGCATACGTTTGGACg        >  1:1139494/1‑150 (MQ=255)
                                                                                                                                   aCGGCCAGCTGGCTGCTGCCCCCTGGCAATGACCGGGTCTATTACCAGCGCCTCGATTACAGCCAGTACCTGGACGCCGCCGGTAGCCAACTGCTGCTGTCGGCGTCGCGCTACCGCAGCGAGCCCGGCACGCGCATACGTTTGGACGAt      <  2:594121/150‑1 (MQ=255)
                                                                                                                                       CCAGCTGGCTGCTGCCCCCTGGCAATGACCGGGTCTATTACCAGCGCCTCGATTACAGCCAGTACCTGGACGCCGCCGGTAGCCAACTGCTGCTGTCGGCGTCGCGCTACCGCAGCGAGCCCGGCACGCGCATACGTTTGGACGATGGcc  <  1:865454‑M1/150‑1 (MQ=255)
                                                                                                                                                |                                                                                                                                            
CCCAGCTGACCGTGCATGCGCGGCGCAAGCAGCTCAGCGCCGCTGTGACCGTGGCCGACTCCAGCCGTGATGCTGCACAGGCCCTGATCACCGTAGCCAGCAATGCCCAGACCCGCCATGGCGAACGCGTCACGGCCAGCTGGCTGCTGCCCCCTGGCAATGACCGGGTCTATTACCAGCGCCTCGATTACAGCCAGTACCTGGACGCCGCCGGTAGCCAACTGCTGCTGTCGGCGTCGCGCTACCGCAGCGAGCCCGGCACGCGCATACGTTTGGACGATGGCC  >  NC_002947/671640‑671924

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: