| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 671,791 | C→A | 8.8% | P281P (CCC→CCA) | PP_0573 → | hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 671,791 | 0 | C | A | 8.8% | 169.6 / 2.8 | 56 | P281P (CCC→CCA) | PP_0573 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base C (26/25); new base A (2/3); total (28/28) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.16e-01 | |||||||||||
GCTGACCGTGCATGCGCGGCGCAAGCAGCTCAGCGCCGCTGTGACCGTGGCCGACTCCAGCCGTGATGCTGCACAGGCCCTGATCACCGTAGCCAGCAATGCCCAGACCCGCCATGGCGAACGCGTCACGGCCAGCTGGCTGCTGCCCCCTGGCAATGACCGGGTCTATTACCAGCGCCTCGATTACAGCCAGTACCTGGACGCCGCCGGTAGCCAACTGCTGCTGTCGGCGTCGCGCTACCGCAGCGAGCCCGGCACGCGCATACGTTTGGACGATGGCCGCGATATCACCCGCGA > NC_002947/671644‑671940 | gCTGACCGTGCATGCGCGGCGCAAGCAGCTCAGCGCCGCTGTGACCGTGGCCGACTCCAGCCGTGATGCTGCACAGGCCCTGATCACCGTAGCCAGCAATGCCCAGACCCGCCATGGCGAACGCGTCACGGCCAGCTGGCTGCTGccccc > 1:1059934/1‑150 (MQ=255) cTGACCGTGCATGCGCGGCGCAAGCAGCTCAGCGCCGCTGTGACCGTGGCCGACTCCAGCCGTGATGCTGCACAGGCCCTGATCACCGTAGCCAGCAATGCCCAGACCCGCCATGGCGAACGCGTCACGGCCAGCTGGCTGCTGCCCCCt < 2:483972/150‑1 (MQ=255) gACCGTGCATGCGCGGCGCAAGCAGCTCAGCGCCGCTGTGACCGTGGCCGACTCCAGCCGTGATGCTGCACAGGCCCTGATCACCGTAGCCAGCAATGCCCAGACCCGCCATGGCGAACGCGTCACGGCCAGCTGGCTGCTGCCCCCTgg < 1:686180/150‑1 (MQ=255) gACCGTGCATGCGCGGCGCAAGCAGCTCAGCGCCGCTGTGACCGTGGCCGACTCCAGCCGTGATGCTGCACAGGCCCTGATCACCGTAGCCAGCAATGCCCAGACCCGCCATGGCGAACGCGTCACGGCCAGCTGGCTGCTGCCCCCTgg < 1:454537/150‑1 (MQ=255) cGTGCATGCGCGGCGCAAGCAGCTCAGCGCCGCTGTGACCGTGGCCGACTCCAGCCGTGATGCTGCACAGGCCCTGATCACCGTAGCCAGCAATGCCCAGACCCGCCATGGCGAACGCGTCACGGCCAGCTGGCTGCTGCCCCCt > 1:1133163/1‑145 (MQ=255) cGTGCATGCGCGGCGCAAGCAGCTCAGCGCCGCTGTGACCGTGGCCGACTCCAGCCGTGATGCTGCACAGGCCCTGATCACCGTAGCCAGCAATGCCCAGACCCGCCATGGCGAACGCGTCACGGCCAGCTGGCTGCTGCCCCCt < 2:1133163/145‑1 (MQ=255) gCATGCGCGGCGCAAGCAGCTCAGCGCCGCTGTGACCGTGGCCGACTCCAGCCGTGATGCTGCACAGGCCCTGATCACCGTAGCCAGCAATGCCCAGACCCGCCATGGCGAACGCGTCACGGCCAGCTGGCTGCTGCCCCCTGGCAATGa > 1:1037710/1‑150 (MQ=255) agcagcTCAGCGCCGCTGTGACCGTGGCCGACTCCAGCCGTGATGCTGCACAGGCCCTGATCACCGTAGCCAGCAATGCCCAGACCCGCCATGGCGAACGCGTCACGGCCAGCTGGCTGCTGCCCCCTGGCAATGACCGGGTCTATTAcc > 2:1062199/1‑150 (MQ=255) gcagcTCAGCGCCGCTGTGACCGTGGCCGACTCCAGCCGTGATGCTGCACAGGCCCTGATCACCGTAGCCAGCAATGCCCAGACCCGCCATGGCGAACGCGTCACGGCCAGCTGGCTGCTGCCCCCTGGCAATGACCGGGTCTATTACCa > 2:1099068/1‑150 (MQ=255) cTCAGCGCCGCTGTGACCGTGGCCGACTCCAGCCGTGATGCTGCACAGGCCCTGATCACCCTAGCCAGCAATGCCCAGACCCGCCATGGCGAACGCGTCACGGCCAGCTGGCTGCTGCCCCCTGGCCATGACCGGGTCTATTACCAgcgc > 2:292625/1‑150 (MQ=255) tCAGCGCCGCTGTGACCGTGGCCGACTCCAGCCGTGATGCTGCACAGGCCCTGATCACCGTAGCCAGCAATGCCCAGACCCGCCATGGCGAACGCGTCACGGCCAGCTGGCTGCTGCCCCCTGGCAATGACCGGGTCTATTACCAGCGcc > 1:820834/1‑150 (MQ=255) gcgcCGCTGTGACCGTGGCCGACTCCAGCCGTGATGCTGCACAGGCCCTGATCACCGTAGCCAGCAATGCCCAGACCCGCCATGGCGAACGCGTCACGGCCAGCTGGCTGCTGCCCCCTGGCAATGACCGGGTCTATTACCAGCGCCTCg > 2:1087842/1‑150 (MQ=255) cgccgcTGTGACCGTGGCCGACTCCAGCCGTGATGCTGCACAGGCCCTGATCACCGTAGCCAGCAATGCCCAGACCCGCCATGGCGAACGCGTCACGGCCAGCTGGCTGCTGCCCCCTGGCAATGACCGGGTCTATTACCAGCGCCTCGa < 1:856322/150‑1 (MQ=255) cTGTGACCGTGGCCGACTCCAGCCGTGATGCTGCACAGGCCCTGATCACCGTAGCCAGCAATGCCCAGACCCGCCATGGCGAACGCGTCACGGCCAGCTGGCTGCTGCCCCCTGGCAATGACCGGGTCTATTACCAGCGCCTCGATTACa < 1:277741/150‑1 (MQ=255) tgtgACCGTGGCCGACTCCAGCCGTGATGCTGCACAGGCCCTGATCACCGTAGCCAGCAATGCCCAGACCCGCCATGGCGAACGCGTCACGGCCAGCTGGCTGCTGCCCCCTGGCAATGACCGGGTCTATTACCAGCGCCTCGATTACAg > 2:713862/1‑150 (MQ=255) gtgACCGTGGCCGACTCCAGCCGTGATGCTGCACAGGCCCTGATCACCGTAGCCAGCAATGCCCAGACCCGCCATGGCGAACGCGTCACGGCCAGCTGGCTGCTGCCCCCTGGCAATGACCGGGTCTATTACCAGCGCCTCGATTACAGc < 1:1087842/150‑1 (MQ=255) aCCGTGGCCGACTCCAGCCGTGATGCTGCACAGGCCCTGATCACCGTAGCCAGCAATGCCCAGACCCGCCATGGCGAACGCGTCACGGCCAGCTGGCTGCTGcccc < 2:427751/106‑1 (MQ=255) aCCGTGGCCGACTCCAGCCGTGATGCTGCACAGGCCCTGATCACCGTAGCCAGCAATGCCCAGACCCGCCATGGCGAACGCGTCACGGCCAGCTGGCTGCTGcccc > 1:427751/1‑106 (MQ=255) cGTGGCCGACTCCAGCCGTGATGCTGCACAGGCCCTGATCACCGTAGCCAGCAATGCCCAGACCCGCCATGGCGAACGCGTCACGGCCAGCTGGCTGCTGCCCCCTGGCAATGACCGGGTCTATTACCAGCGCCTCGATTACAGCCAGTa < 1:657690/150‑1 (MQ=255) gTGGCCGACTCCAGCCGTGATGCTGCACAGGCCCTGATCACCGTAGCCAGCAATGCCCAGACCCGCCATGGCGAACGCGTCACGGCCAGCTGGCTGCTGCCCCCTgg < 2:770009/107‑1 (MQ=255) gTGGCCGACTCCAGCCGTGATGCTGCACAGGCCCTGATCACCGTAGCCAGCAATGCCCAGACCCGCCATGGCGAACGCGTCACGGCCAGCTGGCTGCTGCCCCCTgg > 1:770009/1‑107 (MQ=255) gTGGCCGACTCCAGCCGTGATGCTGCACAGGCCCTGATCACCGTAGCCAGCAATGCCCAGACCCGCCATGGCGAACGCGTCACGGCCAGCTGGCTGCTGCCCCCTGGCAATGACCgg < 1:1174145/117‑1 (MQ=255) gTGGCCGACTCCAGCCGTGATGCTGCACAGGCCCTGATCACCGTAGCCAGCAATGCCCAGACCCGCCATGGCGAACGCGTCACGGCCAGCTGGCTGCTGCCCCCTGGCAATGACCgg > 2:1174145/1‑117 (MQ=255) cGACTCCAGCCGTGATGCTGCACAGGCCCTGATCACCGTAGCCAGCAATGCCCAGACCCGCCATGGCGAACGCGTCACGGCCAGCTGGCTGCTGCCCCCTGGCAATGACCGGGTCTATTACCAGCGCCTCGATTACAGCCAGTACCTGGa > 2:807693/1‑150 (MQ=255) gACTCCAGCCGTGATGATGAACAGGACCTGATCACTGTGGCCAGCTGTGCCCAGACCCGCCATGGCGAACGCGTCACGGCCAGCTGGCTGCTGCCCCCTGGCAATGACCGGGTCTATTACCAGCGCCTCGATTACAGCCAGTACCTGGAc < 2:1037710/150‑1 (MQ=255) gATGCTGCACAGGCCCTGATCACCGTAGCCAGCAATGCCCAGACCCGCCATGGCGAACGCGTCACGGCCAGCTGGCTGCTGCCCCCTGGCAATGACCGGGTCTATTACCAGCGCCTCGATTACAGCCAGTACCTGGACGCCGCCgg < 1:489434/146‑1 (MQ=255) gATGCTGCACAGGCCCTGATCACCGTAGCCAGCAATGCCCAGACCCGCCATGGCGAACGCGTCACGGCCAGCTGGCTGCTGCCCCCTGGCAATGACCGGGTCTATTACCAGCGCCTCGATTACAGCCAGTACCTGGACGCCGCCgg > 2:489434/1‑146 (MQ=255) gctgcACAGGCCCTGATCACCGTAGCCAGCAATGCCCAGACCCGCCATGGCGAACGCGTCACGGCCAGCTGGCTGCTGCCCCCTGGCAATGACCGGGTCTATTACCAGCGCCTCGATTACAGCCAGTACCTGGACGCCGCCGGTAGCCaa > 1:757459/1‑150 (MQ=255) gctgcACAGGCCCTGATCACCGTAGCCAGCAATGCCCAGACCCGCCATGGCGAACGCGTCACGGCCAGCTGGCTGCTGCCCCCTGGCAATGACCGGGTCTATTACCAGCGCCTCGATTACAGCCAGTACCTGGACGCCGCCGGTAGCCaa < 1:897598/150‑1 (MQ=255) tgcACAGGCCCTGATCACCGTAGCCAGCAATGCCCAGACCCGCCATGGCGAACGCGTCACGGCCAGCTGGCTGCTGCCCCCTGGCAATGACCGGGTCTATTACCAGCGCCTCGATTACAGCCAGTACCTGGACGCCGCCGGTAGCCAAct < 2:820834/150‑1 (MQ=255) acaGGCCCTGATCACCGTAGCCAGCAATGCCCAGACCCGCCATGGCGAACGCGTCACGGCCAGCTGGCTGCTGCCCCCTGGCAATGACCGGGTCTATTACCAGCGCCTCGATTACAGCCAGTACCTGGACGCCGCCGGTAGCCAActgct < 1:1062199/150‑1 (MQ=255) caGGCCCTGATCACCGTAGCCAGCAATGCCCAGACCCGCCATGGCGAACGCGTCACGGCCAGCTGGCTGCTGCCCCCTGGCAATGACCGGGTCTATTACCAGCGCCTCGATTACAGCCAGTACCTGGACGCCGCCGGTAGCCAActgctg < 1:1099068/150‑1 (MQ=255) cTGATCACCGTAGCCAGCAATGCCCAGACCCGCCATGGCGAACGCGTCACGGCCAGCTGGCTGCTGCCCCCTGGCAATGACCGGGTCTATTACCAGCGCCTCGATTACAGCCAGTACCTGGACGCCGCCGGTAGCCAACTGCTGCTGTCg > 1:5233/1‑150 (MQ=255) tGATCACCGTAGCCAGCAATGCACAGACCCGCCATGGCGAACGCGTCACGGCCAGCTGGCTGCTGCCCCCTGGCAATGACCGGGTCTATTACCAGCGCCTCGATTACAGCCAGTACCTGGACGCCGCCGGTAGCCAACTGCTGCTGTCgg > 2:833614/1‑150 (MQ=255) ccGTAGCCAGCAATGCCCAGACCCGCCATGGCGAACGCGTCACGGCCAGCTGGCTGCTGCCCCCTGGCAATGACCGGGTCTATTACCAGCGCCTCGATTACAGCCAGTACCTGGACGCCGCCGGTAGCCAACTGCTGCTGTCGGCGTcgc > 1:122572/1‑150 (MQ=255) ccGTAGCCACCCATGCCCAGACCGGCCATGGCTAACGCGTCACGTCGAGCTGGCTGCTGCCCCCTGGCAATTACCGTGTCTATTACCAGCACCTCGCTTACAGCGAGTACCTTGACGACGTCCGTAGCCAACTGCTGCTGTCGGCGTcgc < 2:241189/150‑1 (MQ=255) cGTAGCCAGCAATGCCCAGACCCGCCATGGCGAACGCGTCACGGCCAGCTGGCTGCTGCCCCCTGGCAATGACCGGGTCTATTACCAGCGCCTCGATTACAGCCAGTACCTGGACGCCGCCGGTAGCCAACTGCTGCTGTCGGCGTcgcg > 2:1105989/1‑150 (MQ=255) tAGCCAGCAATGCCCAGACCCGCCATGGCGAACGCGTCACGGCCAGCCGCCTGCGGCCCCCTGGCAATGACCGGGTCTATTACCAGCGCCTCGATTACAGCCAGTACCTGGACGCCGCCGGTAGCCAACTGCTGCTGTCGGCGTCGCGCt < 1:1168175/150‑1 (MQ=255) aGCAATGCCCAGACCCGCCATGGCGAACGCGTCACGGCCAGCTGGCTNCTGCCCCCTGGCAATGACCGGGTCTAATACCAGCGCCTCGATTACAGCCAGTACCTGGACGCCGCCGGTAGCCAGCTGCTGCTGTCGGCGTCGCGCAACCGc > 1:358830/1‑150 (MQ=255) aGCAATGCCCAGACCCGCCATGGCGAACGCGTCACGGCCAGCTGGCTGCTGCCCCCTGGCAATGACCGGGTCTATTACCAGCGCCTCGATTACAGCCAGTACCTGGACGCCGCCGGTAGCCAACTGCTGCTGTCGGCGTCGCGCTACCGc > 2:1109790/1‑150 (MQ=255) aGCAATGCCCAGACCCGCCATGGCGAACGCGTCACGGCCAGCTGGCTGCTGCCCCCTGGCAATGACCGGGTCTATTACCAGCGCCTCGATTACAGCCAGTACCTGGACGCCGCCGATAGCCAACTGCTGCTGTCg > 2:114393/1‑135 (MQ=255) aGCAATGCCCAGACCCGCCATGGCGAACGCGTCACGGCCAGCTGGCTGCTGCCCCCTGGCAATGACCGGGTCTATTACCAGCGCCTCGATTACAGCCAGTACCTGGACGCCGCCGATAGCCAACTGCTGCTGTCg < 1:114393/135‑1 (MQ=255) cAATGCCCAGACCCGCCATGGCGAACGCGTCACGGCCAGCTGGCTGCTGCCCCCTGGCAATGACCGGGTCTATTACCAGCGCCTCGATTACAGCCAGTACCTGGACGCCGCCGGTAGCCAACTGCTGCTGTCGGCGTCGCGCTACCGCAg > 1:227165/1‑150 (MQ=255) ccAGACCCGCCATGGCGAACGCGTCACGGCCAGCTGGCTGCTGCCCCCTGGCAATGACCGGGTCTATTACCAGCGCCTCGATTACAGCCAGTACCTGGACGCCGCCGGTAGCCAACTGCTGCTGTCGGCGTCGCGCTACCGCAGCGAGcc > 1:908205/1‑150 (MQ=255) aTGGCGAACGCGTCACGGCCAGCTGGCTGCTGCCCCCTGGCAATGACCGGGTCTATTACCAGCGCCTCGATTACAGCCAGTACCTGGAc > 2:839308/1‑89 (MQ=255) aTGGCGAACGCGTCACGGCCAGCTGGCTGCTGCCCCCTGGCAATGACCGGGTCTATTACCAGCGCCTCGATTACAGCCAGTACCTGGAc < 1:839308/89‑1 (MQ=255) aTGGCGAACGCGTCACGGCCAGCTGGCTGCTGCCCCCTGGCAATGACCGGGTCTATTACCAGCGCCTCGATTACAGCCAGTACCTGGACGCCGCCGGTAGCCAACTGCTGCTGTCGGCGTCGCGGTACCGCAGCGAGCCCGGCACGCGCa > 1:469748/1‑150 (MQ=255) aatagacccggtcattGCCAGGGGGCAGCAGCCAGCTGGCAATGACCGGGTCTATTACCAGCGCCTCGATTACAGCCAGTACCTGGACGCCGCCGGTAGCCAActgctgc < 2:17258‑M1/94‑1 (MQ=255) aatagacccggtcattGCCAGGGGGCAGCAGCCAGCTGGCAATGACCGGGTCTATTACCAGCGCCTCGATTACAGCCAGTACCTGGACGCCGCCGGTAGCCAActgctgc > 1:17258‑M1/17‑110 (MQ=255) gAACGCGTCACGGCCAGCTGGCTGCTGCCCCCTGGCAATGACCGGGTCTATTACCAGCGCCTCGATTACAGCCAGTACCTGGACGCCGCCGGTAGCCAACTGCTGCTGTCGGCGTCGCGCTACCGCAGCGAGCCCGGCACGCGCATACGt < 2:704871/150‑1 (MQ=255) acccggtcattGCCAGGGGGCAGCAGCCAGCTGGCAATGCCCGGGTCTATTACCAGCGCCTCGATTACAGCCAGTACCTGGACGCCGCCGGTAGCCAACTGCTGCTGTCGGCGTCGCGCTACCGCAGCGAGCCCGGCAcgc > 1:601592‑M1/12‑141 (MQ=255) acccggtcattGCCAGGGGGCAGCAGCCAGCTGGCAATGACCGGGTCTATTACCAGCGCCTCGATTACAGCCAGTACCTGGACGCCGCCGGTAGCCAACTGCTGCTGTCGGCGTCGCGCTACCGCAGCGAGCCCGGCAcgc < 2:601592‑M1/130‑1 (MQ=255) cgTCACGGCCAGCTGGCTGCTGCCCCCTGGCAATGACCGGGTCTATTACCAGCGCCTCGATTACAGCCAGTACCTGGACGCCGCCGGTAGCCAACTGCTGCTGTCGGCGTCGCGCTACCGCAGCGAGCCCGGCACGCGCATACGTTTGGa < 1:943673/150‑1 (MQ=255) tcattGCCAGGGGGCAGCAGCCAGCTGGCAATGAGCGGGTCTATTACCAGCGCAGCGATTACAGCCAGTAGCTGGACGCCGCCGGTAGCCAACTGCTGCTGTCGGCGTTGCGCTACCGCAGCGGGCCCGGCACGCGCATACGTTTGGACg < 2:367181‑M1/145‑1 (MQ=255) tCACGGCCAGCTGGCTGCTGCCCCCTGGCAATGACCGGGTCTATTACCAGCGCCTCGATTACAGCCAGTACCTGGACGCCGCCGGTa > 2:717393/1‑87 (MQ=255) tCACGGCCAGCTGGCTGCTGCCCCCTGGCAATGACCGGGTCTATTACCAGCGCCTCGATTACAGCCAGTACCTGGACGCCGCCGGTa < 1:717393/87‑1 (MQ=255) tCACGGCCAGCTGGCTGCTGCCCCCTGGCAATGACCGGGTCTATTACCAGCGCCTCGATTACAGCCAGTACCTGGACGCCGCCGGTAGCCAACTGCTGCTGTCGGCGTCGCGCTACCGCAGCGAGCCCGGCACGCGCATACGTTTGGACg > 1:1139494/1‑150 (MQ=255) aCGGCCAGCTGGCTGCTGCCCCCTGGCAATGACCGGGTCTATTACCAGCGCCTCGATTACAGCCAGTACCTGGACGCCGCCGGTAGCCAACTGCTGCTGTCGGCGTCGCGCTACCGCAGCGAGCCCGGCACGCGCATACGTTTGGACGAt < 2:594121/150‑1 (MQ=255) CCAGCTGGCTGCTGCCCCCTGGCAATGACCGGGTCTATTACCAGCGCCTCGATTACAGCCAGTACCTGGACGCCGCCGGTAGCCAACTGCTGCTGTCGGCGTCGCGCTACCGCAGCGAGCCCGGCACGCGCATACGTTTGGACGATGGcc < 1:865454‑M1/150‑1 (MQ=255) cccTGGCAATGACCGGGTCTATTACCAGCGCCTCGATTACAGCCAGTACCTGGACGCCGCCGGTAGCCAACTGCTGCTGTCGGCGTCGCGCTACCGCAGCGAGCCCGGCACGCGCATACGTTTGGACGATGGCCGCGATATCACCCGCGa < 1:833614/150‑1 (MQ=255) | GCTGACCGTGCATGCGCGGCGCAAGCAGCTCAGCGCCGCTGTGACCGTGGCCGACTCCAGCCGTGATGCTGCACAGGCCCTGATCACCGTAGCCAGCAATGCCCAGACCCGCCATGGCGAACGCGTCACGGCCAGCTGGCTGCTGCCCCCTGGCAATGACCGGGTCTATTACCAGCGCCTCGATTACAGCCAGTACCTGGACGCCGCCGGTAGCCAACTGCTGCTGTCGGCGTCGCGCTACCGCAGCGAGCCCGGCACGCGCATACGTTTGGACGATGGCCGCGATATCACCCGCGA > NC_002947/671644‑671940 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |