| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 883,810 | C→A | 9.4% | intergenic (+45/‑283) | PP_0766 → / → PP_0767 | hypothetical protein/LuxR family transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 883,810 | 0 | C | A | 9.4% | 157.9 / 2.8 | 52 | intergenic (+45/‑283) | PP_0766/PP_0767 | hypothetical protein/LuxR family transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base C (25/22); new base A (2/3); total (27/25) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.62e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.64e-01 | |||||||||||
CTTGGGATGAAGAACGAAGAGAAACGTGCCTACGACTTCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTC‑AGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCA > NC_002947/883664‑883951 | cTTGGGATGAAGAACGAAGAGAAACGTGCCTACGACTTCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTC‑AGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGcc > 1:310162/1‑150 (MQ=255) gaaCGAAGAGAAACGTGCCTACGACTTCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTC‑AGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCt > 1:718132/1‑150 (MQ=255) aaCGAAGAGAAACGTGCCTACGACTTCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTC‑AGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCGAGCCGGGGCGttctgg < 2:618758/150‑5 (MQ=255) aaaCGTGCCTACGACTTCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTC‑AGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGAC < 1:1015081‑M1/150‑1 (MQ=255) tGCCTACGACTTCGTCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCACCATCGAGGCGGCTATT‑GCTAGTCTCAAATCACTGAAAGACGTGTAACCCCAAGCTCGCGTCGGTTCGCCGGGGCGTTTCTATTTCCTGACCCGGc < 1:875714/150‑1 (MQ=255) tGCCTACGACTTCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTC‑AGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGC > 1:962975‑M1/1‑150 (MQ=255) cTACGACTTCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTC‑AGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTC < 2:962975‑M1/150‑1 (MQ=255) cTTCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTC‑AGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTc < 2:706898/112‑1 (MQ=255) cTTCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTC‑AGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTc > 1:706898/1‑112 (MQ=255) gTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTC‑AGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGC < 2:262712‑M1/150‑1 (MQ=255) tGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTC‑AGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCT > 1:660219‑M1/1‑150 (MQ=255) aGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTC‑AGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTA < 2:718132‑M1/150‑1 (MQ=255) aGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTC‑AGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTA > 1:566641‑M1/1‑150 (MQ=255) aGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTC‑AGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTA > 1:693566‑M1/1‑150 (MQ=255) aGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTC‑AGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGG < 1:900265‑M1/135‑1 (MQ=255) aGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTC‑AGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGG > 2:900265‑M1/1‑135 (MQ=255) cAAGGCCGATTTCCAGCCCGCAGCGCTGCGTC‑AGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACc > 2:223431‑M1/1‑149 (MQ=255) aGGCCGATTTCCAGCCCGCAGCGCTGCGTC‑AGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGc > 1:222814/1‑94 (MQ=255) aGGCCGATTTCCAGCCCGCAGCGCTGCGTC‑AGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGc < 2:222814/94‑1 (MQ=255) tttCCAGCCCGCAGCGCTGCGTC‑AGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACcgcggaacct < 2:310162‑M1/150‑11 (MQ=255) ttCCAGCCCGCAGCGCTGCGTC‑AGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGg > 2:54400‑M2/1‑149 (MQ=255) tCCAGCCCGCAGCGCTGCGTC‑AGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACcgcggaacctgt < 2:660219‑M1/150‑13 (MQ=255) aGCCCGCAGCGCTGCGTC‑AGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACcgcggaacct > 2:276770‑M1/1‑135 (MQ=255) aGCCCGCAGCGCTGCGTC‑AGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACcgcggaacct < 1:276770‑M1/145‑11 (MQ=255) ccGCATCGCTGCGTC‑AGCCGGGTATTCGCTCAGCTGAAATCACTGCACGCCGTGTCAACCCCAGAACGCCCGGGCTCCCCGGGGCGGTTCTATTGCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGCTTCCGCGgtaggagc > 2:365728‑M2/1‑142 (MQ=255) gCAGCGCTGCGTC‑AGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTTAACCCGCTCCTACcgcggaacctgtaggagcgg < 1:223431‑M1/150‑21 (MQ=255) gCAGCGCTGCGTC‑AGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACcgcggaacctgtaggagcgg < 2:693566‑M1/150‑21 (MQ=255) gCAGCGCTGCGTC‑AGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACcgcggaacctgtaggagcgg < 2:810625‑M1/150‑21 (MQ=255) gCAGCGCTGCGTC‑AGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGgtaggagcgg > 2:566641‑M2/1‑140 (MQ=255) gCAGCGCTGCGTC‑AGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCGAGCCGGGGCGtt > 2:533515/1‑86 (MQ=255) gCAGCGCTGCGTC‑AGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCGAGCCGGGGCGtt < 1:533515/86‑1 (MQ=255) cAGCGCTGCGTC‑AGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGgtaggagcggg > 1:52197‑M2/1‑139 (MQ=255) aGCGCTGCGTC‑AGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACcgcggaacctgtag > 1:620542‑M1/1‑128 (MQ=255) aGCGCTGCGTC‑AGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCCCGGGTGAACCCGCTCCTACcgcggaaactgtag < 2:620542‑M1/142‑15 (MQ=255) tCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGgtaggagcgggttcac > 2:190010‑M2/1‑125 (MQ=255) tCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGgtaggagcgggttcac < 1:190010‑M2/141‑17 (MQ=255) tCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGG < 2:145848‑M1/99‑1 (MQ=255) tCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGG > 1:145848‑M1/1‑99 (MQ=255) ttCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCGAGCCggg > 1:729978/1‑59 (MQ=39) ttCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCGAGCCggg < 2:729978/59‑1 (MQ=38) gCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCTGGCCTCTTCGCGGGTGAAC > 1:985848‑M1/1‑95 (MQ=255) gCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAAC < 2:985848‑M1/95‑1 (MQ=255) cTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGgtaggagcgggttca > 1:561309‑M2/1‑109 (MQ=255) cTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGgtaggagcgggttca < 2:561309‑M2/124‑16 (MQ=255) aTCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAg > 1:1153007/1‑96 (MQ=255) aTCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAg < 2:1153007/96‑1 (MQ=255) tCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTACGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAACCAAcct > 2:118854/1‑150 (MQ=255) cccAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTA < 2:593869‑M1/72‑1 (MQ=255) cccAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTA > 1:593869‑M1/1‑72 (MQ=255) cccAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAAC < 2:695977‑M1/63‑1 (MQ=255) cccAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAAC > 1:695977‑M1/1‑63 (MQ=255) ccccGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCa > 2:1135172/1‑150 (MQ=255) ccGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATc > 2:684416/1‑114 (MQ=255) ccGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATc < 1:684416/114‑1 (MQ=255) | CTTGGGATGAAGAACGAAGAGAAACGTGCCTACGACTTCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTC‑AGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCA > NC_002947/883664‑883951 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |