Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,221,043 | T→G | 12.5% | D90A (GAC→GCC) | dctD‑II ← | C4‑dicarboxylate transport transcriptional regulator |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,221,043 | 0 | T | G | 12.5% | 117.7 / 9.2 | 48 | D90A (GAC→GCC) | dctD‑II | C4‑dicarboxylate transport transcriptional regulator |
Reads supporting (aligned to +/- strand): ref base T (19/23); new base G (2/4); total (21/27) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.83e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.94e-01 |
GTTCGGCCAGCTGGCGGCGCAGGGCCACCACTTCGCGTGACAGCCCGCGCTGTTCCAGCGCGCGGCGTACCACGTCGACCAGGCGCTCGGGGGAGAACGGTTTTTCCATGAAGTCGTAGGCGCCGTTACGCATGGCGCCAACGGCCATGTCGATATCGCCATGGCCAGTGATCAGCACCACCGGCAGGCTGCGGTCACGGGCCTTGAGGCGATTGAGCAGCTCCAGGCCATCAATACCCGGCAGGCGGATATCGCTGACGACAATGCCGGCAAAATCGTCGCCGATGCGTTCCAGCG > NC_002947/1220894‑1221190 | gTTCGGCCAGCTGGCGGCGCAGGGCCACCACTTCGCGTGACAGCCCGCGCTGTTCCAGCGCGCGGCGTACCACGTCGACCAGGCGCTCGGGGGAGAACGGTTTTTCCATGAAGTCGTAGGCGCCGTTACGCATGGCGCCAACGGCCATGt < 2:491353/150‑1 (MQ=255) cGGCCAGCTGGCGGCGCAGGGCCACCACTTCGCGTGACAGCCCGCGCTGTTCCAGCGCGCGGCGTACCACGTCGACCAGGCGCTCGGGGGAGAACGGTTTTTCCATGAAGTCGTAGGCGCCGTTACGCATGGCGCCAACGGCCATGTCGa < 2:35381/150‑1 (MQ=255) cAGCTGGCGGCGCAGGGCCACCACTTCGCGTGACAGCCCGCGCTGTTCCAGCGCGCGGCGTACCACGTCGACCAGGCGCTCGGGGGAGAACGGTTTTTCCATGAAGTCGTAGGCGCCGTTACGCATGGCGCCAACGGCCATGTCGATATc < 2:79083/150‑1 (MQ=255) tGGCGGCGCAGGGCCACCACTTCGCGTGACAGCCCGCGCTGTTCCAGCGCGCGGCGTACCACGTCGACCAGGCGCTCGGGGGAGAACGGTTTTTCCATGAAGTCGTAGGCGCCGTTACGCATGGCGCCAACGGCCATGTCGATATCGCCa < 2:267099/150‑1 (MQ=255) ggcggcGCAGGGCCACCACTTCGCGTGACAGCCCGCGCTGTTCCAGCGCGCGGCGTACCACGTCGACCAGGCGCTCGGGGGAGAACGGTTTTTCCATGAAGTCGTAGGCGCCGTTACGCATGGCGCCAACGGCCATGTCGATATCGCCAt < 1:492359/150‑1 (MQ=255) ggcggcGCAGGGCCACCACTTCGCGTGACAGCCCGCGCTGTTCCAGCGCGCGGCGTACCACGTCGACCAGGCGCTCGGGGGAGAACGGTTTTTCCATGAAGTCGTAGGCGCCGTTACGCATGGCGCCAACGGCCATGGCGATATCGACAt < 1:911150/150‑1 (MQ=255) ggcgCAGGGCCACCACTTCGCGTGACAGCCCGCGCTGTTCCAGCGCGCGGCGTACCACGTCGACCAGGCGCTCGGGGGAGAACGGTTTTTCCATGAAGTCGTAGGCGCCGTTACGCATGGCGCCAACGGCCATGTCGATATCGCCATGGc > 1:1000895/1‑150 (MQ=255) ggcgCAGGGCCACCACTTCGCGTGACAGCCCGCGCTGTTCCAGCGCGCGGCGTACCACGTCGACCAGGCGCTCGGGGGAGAACGGTTTTTCCATGAAGTCGTAGGCGCCGTTACGCATGGCGCCAACGGCCATGTCGATATCGCCATGGc < 2:429991/150‑1 (MQ=255) cAGGGCCACCACTTCGCGTGACAGCCCGCGCTGTTCCAGCGCGCGGCGTACCACGTCGACCAGGCGCTCGGGGGAGAACGGTTTTTCCATGAAGTCGTAGGCGCCGTTACGCATGGCGCCAACGGCCATGTCGATATCGCCATGGCCAGt < 1:685403/150‑1 (MQ=255) aGGGCCACCACTTCGCGTGACAGCCCGCGCTGTTCCAGCGCGCGGCGTACCACGTCGACCAGGCGCTCGGGGGAGAACGGTTTTTCCATGAAGTCGTAGGCGCCGTTACGCATGGCGCCAACGGCCATGGCGATATCGACATGGccgttg < 1:771745/150‑5 (MQ=255) accacTTCGCGTGACAGCCCGCGCTGTTCCAGCGCGCGGCGTACCACGTCGACCAGGCGCTCGGGGGAGAACGGTTTTTCCATGAAGTCGTAGGCGCCGTTACGCATGGCGCCAACGGCCATGTCGATATCGCCATGGCCAGTGATCAGc > 1:538991/1‑150 (MQ=255) gTGACAGCCCGCGCTGTTCCAGCGCGCGGCGTACCACGTCGACCAGGCGCTCGGGGGAGAACGGTTTTTCCATGAAGTCGTAGGCGCCGTTACGCATGGCGCCAACGGCCATGTCGATATCGCCATGGCCAGTGATCAGCACCACCGGCa > 1:107263/1‑150 (MQ=255) gCCCGCGCTGTTCCAGCGCGCGGCGTACCACGTCGACCAGGCGCTCGGGGGAGAACGGTTTTTCCATGAAGTCGTAGGCGCCGTTACGCATGGCGCCAACGGCCATGTCGATATCGCCATGGCCAGTGATCAGCACCACCGGCAGGCTGc < 1:57729/150‑1 (MQ=255) ccGCGCTGTTCCAGCGCGCGGCGTACCACGTCGACCAGGCGCTCGGGGGAGAACGGTTTTTCCATGAAGTCGTAGGCGCCGTTACGCATGGCGCCAACGGCCATGTCGATATCGCCATGGCCAGTGATCAGCACCACCGGCAGGCTGCgg > 1:95251/1‑150 (MQ=255) gcggTTCCAGCGCGCGGCGTACCACGTCGACCAGGCGCTCGGGGGAGAACGGTTTTTCCATGAAGTCGTAGGCGCCGTTACGCATGGCGCCAACGGCCATGTCGATATCGCCATGGCCAGTGATCAGCACCACCGGCAGGCTGCGGTCAc > 1:1205728/4‑150 (MQ=255) tGTTCCAGCGCGCGGCGTACCACGTCGACCAGGCGCTCGGGGGAGAACGGTTTTTCCATGAAGTCGTAGGCGCCGTTACGCATGGCGCCAACGGCCATGTCGATATAGCCATGGCCAGTGATCAGCACCACCGGCAGGCTGCGGTCACgg < 1:580192/150‑1 (MQ=255) gcgTACCACGTCGACCAGGCGCTCGGGGGAGAACGGTTTTTCCATGAAGTCGTAGGCGCCGTTACGCATGGCGCCAACGGCCATGTCGATATCGCCATGGCCAGTGATCAGCACCACCGGCAGGCTGCGGTCACGGGCCTTGAGGCGAtt < 1:113128/150‑1 (MQ=255) gTACCACGTCGACCAGGCGCTCGGGGGAGAACGGTTTTTCCATGAAGTCGTAGGCGCCGTTACGCATGGCGCCAACGGCCATGTCGATATCGCCATGGCCAGTGATCAGCACCACCGGCAGGCTGCGGTCACGGGCCTTGAGGCGATTGa < 2:1000895/150‑1 (MQ=255) tACCACGTCGACCAGGCGCTCGGGGGAGAACGGTTTTTCCATGAAGTCGTAGGCGCCGTTACGCATGGCGCCAACGGCCATGTCGATATCGCCATGGCCAGTGATCAGCACCACCGGCAGGCTGCGGTCACGGGCCTTGAGGCGATTGag < 2:95251/150‑1 (MQ=255) aCCACGTCGACCAGGCGCTCGGGGGAGAACGGTTTTTCCATGAAGTCGTAGGCGCCGTTACGCATGGCGCCAACGGCCATGTCGATATCGCCATGGCCAGTGATCAGCACCACCGGCAGGCTGCGGTCACGGGCCTTGAGGCGATTGagc > 2:1026450/1‑150 (MQ=255) gACCAGGCGCTCGGGGGAGAACGGTTTTTCCATGAAGTCGTAGGCGCCGTTACGCATGGCGCCAACGGCCATGTCGATATCGCCATGGCCAGTGATCAGCACCACCGGCAGGCTGCGGTCACGGGCCTTGAGGCGATTGAGCAGCTCCAg < 1:1013554/150‑1 (MQ=255) aCCAGGCGCTCGGGGGAGAACGGTTTTTCCATGAAGTCGTAGGCGCCGTTACGCATGGCGCCAACGGCCATGTCGATATCGCCATGGCCAGTGATCAGCACCACCGGCAGGCTGCGGTCACGGGCCTTGAGGCGATTGAGCAGCTCCAgg > 2:1048778/1‑150 (MQ=255) ggCGCTCGGGGGAGAACGGTTTTTCCATGAAGTCGTAGGCGCCGTTACGCATGGCGCCAACGGCCATGTCGATATCGCCATGGCCAGTGATCAGCACCACCGGCAGGCTGCGGTCACGGGCCTTGAGGCGATTGAGCAGCTCCAGGCCAt < 1:693173/150‑1 (MQ=255) ggCGCTCGGGGGAGAACGGTTTTTCCATGAAGTCGTAGGCGCCGTTACGCATGGCGCCAACGGCCATGTCGATATCGCCATGGCCAGTGATCAGCACCACCGGCAGGCTGCGGTCACGGGCCTTGAGGCGATTGAGCAGCTCCAGGCCAt < 1:464765/150‑1 (MQ=255) gcgcTCGGGGGAGAACGGTTTTTCCATGAAGTCGTAGGCGCCGTTACGCATGGCGCCAACGGCCATGTCGATATCGCCATGGCCAGTGATCAGCACCACCGGCAGGCTGCGGTCACGGGCCTTGAGGCGATTGAGCAGCTCCAGGCCATc > 1:1029145/1‑150 (MQ=255) tCGGGGGAGAACGGTTTTTCCATGAAGTCGTAGGCGCCGTTACGCATGGCGCCAACGGCCATGTCGATATCGCACTGCTGAGCTACAATCACTAGCGTCAGGCTGCGGTCACGGGCCTTGAGGCGATTGAGCAGCTCCAGGCCATCAATa > 1:1177868/1‑150 (MQ=255) gggAGAACGGTTTTTCCATGAAGTCGTAGGCGCCGTTACGCATGGCGCCAACGGCCATGTCGATATCGCCATGGCCAGTGATCAGCACCACCGGCAGGCTGCGGTCACGGGCCTTGAGGCGATTGAGCAGCTCCAGGCCATCAATACCCg < 1:1179637/150‑1 (MQ=255) ggAGAACGGTTTTTCCATGAAGTCGTAGGCGCCGTTACGCATGGCGCCAACGGCCATGTCGATATCGCCATGGCCAGTGATCAGCACCACCGGCAGGCTGCGGTCACGGGCCTTGAGGCGATTGAGCAGCTCCAGGCCATCAATAccc < 1:234567/148‑1 (MQ=255) ggAGAACGGTTTTTCCATGAAGTCGTAGGCGCCGTTACGCATGGCGCCAACGGCCATGTCGATATCGCCATGGCCAGTGATCAGCACCACCGGCAGGCTGCGGTCACGGGCCTTGAGGCGATTGAGCAGCTCCAGGCCATCAATAccc > 2:234567/1‑148 (MQ=255) gaACGGTTTTTCCATGAAGTCGTAGGCGCCGTTACGCATGGCGCCAACGGCCATGTCGATATCGCCATGGCCAGTGATCAGCACCACCGGCAGGCTGCGGTCACGCGCCTTGAGGCGATTGAGCAGATCCCGTCGATCAATACCCGGCAg < 2:107263/150‑1 (MQ=255) aaCGGTTTTTCTTTTTAGTCGTAGGCGCCGTTACGCATGGCGCCAACGGCCATGTCGATATCGCCATGGCCAGTGATCAGCACCACCGGCAGGCTGCGGTCACGGGCCTTGAGGCGATTGAGCAGCTCCAGGCCATCAATACCCGGCAgg > 2:1066298/1‑150 (MQ=255) aTGAAGTCGTAGGCGCCGTTACGCATGGCGCCAACGGCCATGTCGATATCGCCATGGCCAGTGATCAGCACCACCGGCAGGCTGCGGTCACGGGCCTTGAGGCGATTGAGCAGCTCCAGGCCATCAATACCCGGCAGGCGGATATCGCTg > 1:310357/1‑150 (MQ=255) gcgcCGTTACGCATGGCGCCAACGGCCATGTCGATATCGCCATGGCCAGTGATCAGCACCACCGGCAGGCTGCGGTCACGGGCCTTGAGGCGATTGAGCAGCTCCAgg < 1:896537/108‑1 (MQ=255) gcgcCGTTACGCATGGCGCCAACGGCCATGTCGATATCGCCATGGCCAGTGATCAGCACCACCGGCAGGCTGCGGTCACGGGCCTTGAGGCGATTGAGCAGCTCCAgg > 2:896537/1‑108 (MQ=255) gcCGTTACGCATGGCGCCAACGGCCATGTCGATATCGCCATGGCCAGTGATCAGCACCACCGGCAGGCTGc < 1:35248/71‑1 (MQ=255) gcCGTTACGCATGGCGCCAACGGCCATGTCGATATCGCCATGGCCAGTGATCAGCACCACCGGCAGGCTGc > 2:35248/1‑71 (MQ=255) gcCGTTACGCATGGCGCCAACGGCCATGTCGATATCGCCATGGCCAGTGATCAGCACCACCGGCAGGCTGCGGTCACGGGCCTTGAGGCGATTGAGCAGCTCCAGGCCATCAATACCCGGCAGGCGGATATCGCTGACGACAATGCCGGc > 1:646178/1‑150 (MQ=255) cATGGCGCCAACGGCCATGTCGATATCGCCATGGCCAGTGATCAGCACCACCGGCAGGCTGCGGTCACGGGCCTTGAGGCGATTGAGCAGCTCCAGGCCATCAATACCCGGCAGGCGGATATCGCTGACGACAATGCCGGCAAAAtcgtc < 2:1177868/150‑1 (MQ=255) aTGGCGCCAACGGCCATGTCGATATCGCCATGGCCAGTGATCAGCACCACCGGCAGGCTGCGGTCACGGGCCTTGAGGCGATTGAGCAGCTCCAGGCCATCAATACCCGGCAGGCGGATATCGCTGACGACAATGCCg < 2:1116773/138‑1 (MQ=255) aTGGCGCCAACGGCCATGTCGATATCGCCATGGCCAGTGATCAGCACCACCGGCAGGCTGCGGTCACGGGCCTTGAGGCGATTGAGCAGCTCCAGGCCATCAATACCCGGCAGGCGGATATCGCTGACGACAATGCCg > 1:1116773/1‑138 (MQ=255) aTGGCGCCAACGGCCATGTCGATATCGCCATGGCCAGTGATCAGCACCACCGGCAGGCTGCGGTCACGGGCCTTGAGGCGATTGAGCAGCTCCAGGCCATCAATACCCGGCAGGCGGATATCGCTGACGACAATGCCGGCAAAAtcgtcg > 2:256430/1‑150 (MQ=255) tGGCGCCAACGGCCATGTCGATATCGCCATGGCCAGTGATCAGCACCACCGGCAGGCTGCGGTCACGGGCCTTGAGGCGATTGAGCAGCTCCAGGCCATCAATACCCGGCAGGCGGATATCGCTGACGACAATGCCGGCAAAATCGTCGc < 1:315961/150‑1 (MQ=255) gcCAACGGCCATGTCGATATCGCCATGGCCAGTGATCAGCACCACCGGCAGGCTGCGGTCACGGGCCTTGAGGCGATTGAGCAGCTCCAGGCCATCAATACCCGGCAGGCGGATATCGCTGACGACAATGCCGGCAAAATCGTCGCCGAt > 2:1083158/1‑150 (MQ=255) tggCCATGGCGATATCGACATGGCCGGTGATCAGCACCACCGGCAGGCTGCGGTCACGGGCCTTGAGGCGATTGAGCAGCTCCAGGCCATCAATAccc < 2:1071212/97‑1 (MQ=39) tggCCATGGCGATATCGACATGGCCGGTGATCAGCACCACCGGCAGGCTGCGGTCACGGGCCTTGAGGCGATTGAGCAGCTCCAGGCCATCAATAccc > 1:1071212/2‑98 (MQ=39) tggCCATGGCGATATCGACATGGCCAGTGATCAGCACCACCGGCAGGCTGCGGTCACGGGCCTTGAGGCGATTGAGCAGCTCCAGGCCATCAATACCCGGCAGGCGGATATCGCTga < 1:466168/116‑1 (MQ=255) tggCCATGGCGATATCGACATGGCCAGTGATCAGCACCACCGGCAGGCTGCGGTCACGGGCCTTGAGGCGATTGAGCAGCTCCAGGCCATCAATACCCGGCAGGCGGATATCGCTga > 2:466168/2‑117 (MQ=255) cGGCCATGTCGATATCGCCATGGCCAGTGATCAGCACCACCGGCAGGCTGCGGTCACGGGCCTTGAGGCGATTGAGCAGCTCCAGGCCATCAATACCCGGCAGGCGGATATCGCTGACGACAATGCCGGCAAAATCGTCGCCGATGCGtt < 2:310357/150‑1 (MQ=255) tGTCGATATCGCCATGGCCAGTGATCAGCACCACCGGCAGGCTGCGGTCACGGGCCTTGAGGCGATTGAGCAGCTCCAGGCCATCAATACCCGGAAGGCGGATATCGCTGACGACAATGCCGGCAAAATCGTCGCCGATGCGTTCCAgcg > 1:986263/1‑150 (MQ=255) | GTTCGGCCAGCTGGCGGCGCAGGGCCACCACTTCGCGTGACAGCCCGCGCTGTTCCAGCGCGCGGCGTACCACGTCGACCAGGCGCTCGGGGGAGAACGGTTTTTCCATGAAGTCGTAGGCGCCGTTACGCATGGCGCCAACGGCCATGTCGATATCGCCATGGCCAGTGATCAGCACCACCGGCAGGCTGCGGTCACGGGCCTTGAGGCGATTGAGCAGCTCCAGGCCATCAATACCCGGCAGGCGGATATCGCTGACGACAATGCCGGCAAAATCGTCGCCGATGCGTTCCAGCG > NC_002947/1220894‑1221190 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |