| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,361,434 | T→C | 11.6% | H164H (CAT→CAC) | phoP → | two‑component system DNA‑binding transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,361,434 | 0 | T | C | 11.6% | 110.1 / 6.0 | 43 | H164H (CAT→CAC) | phoP | two‑component system DNA‑binding transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base T (21/17); new base C (2/3); total (23/20) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.50e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.77e-01 | |||||||||||
CTGTTGCGCCGCTCCAGTGGTTTCACCCAGTCGACCATCGCCGCTGGCCCCTTGGTGCTTGACCTCAACCGCAAGCAGGCCACCCTCGACGAACAAGCCTTGGCCCTGACCGCCTACGAATACCGCATCCTCGAATACCTCATGCGCCATCACCAGCAGGTGGTGGCCAAGGATCGCCTGATGGAGCAGTTGTACCCAGGAGACGAAGAGCGCGACCCCAATGTCATCGAAGTGCTGGTTGGCCGCCTGCGCCGCAAGCTTGAAGGCGAGCGCGGCTTCAAACCCATCGACACGGTG > NC_002947/1361285‑1361581 | cTGTTGCGCCGCTCCAGTGGTTTCACCCAGTCGACCATCGCCGCTGGCCCCTTGGTGCTTGACCTCAACCGCAAGCAGGCCACCCTCGACGAACAAGCCTTGGCCCTGACCGCCTACGAATACCGCATCCTCGAATACCTCATGCGCCAt > 1:1174820/1‑150 (MQ=255) gTGGTTTCACCCAGTCGACCATCGCCGCTGGCCCCTTGGTGCTTGACCTCAACCGCAAGCAGGCCACCCTCGACGAACAAGCCTTGGCCCTGACCGCCTACGAATACCGCATCCTCGAATACCTCATGCGCCACCACCTGCTGGtgatgg < 1:35674/150‑1 (MQ=255) tGGTTTCACCCAGTCGACCATCGCCGCTGGCCCCTTGGTGCTTGGCCTCAACCGCAAGCAGGCCACCCTCGACTAACAAGCCTTGGCCCTGACCGCCTACGAATACCGCATCCTCGAATACCTCATGCGCCATCACCAGCAGGTGGTGGc > 2:1157466/1‑150 (MQ=255) tttCACCCAGTCGACCATCGCCGCTGGCCCCTTGGTGCTTGACCTCAACCGCAAGCAGGCCACCCTCGACGAACAAGCCTTGGCCCTGACCGCCTACGAATACCGCATCCTCGAATACCTCATGCGCCATCACCAGCAGGTGGTGGCCaa > 2:566673/1‑150 (MQ=255) aCCCAGTCGACCATCGCCGCTGGCCCCTTGGTGCTTGACCTCAACCGCAAGCAGGCCACCCTCGACGAACAAGCCTTGGCCCTGACCGCCTACGAATACCGCATCCTCGAATACCTCATGCGCCATCAc > 1:282833/1‑129 (MQ=255) aCCCAGTCGACCATCGCCGCTGGCCCCTTGGTGCTTGACCTCAACCGCAAGCAGGCCACCCTCGACGAACAAGCCTTGGCCCTGACCGCCTACGAATACCGCATCCTCGAATACCTCATGCGCCATCAc < 2:282833/129‑1 (MQ=255) cAGTCGACCATCGCCGCTGGCCCCTTGGTGCTTGACCTCAACCGCAAGCAGGCCACCCCCGACGAACAAGCCTTGGCCCTGACCGCCTACGAATACCGCATCCTCGAGTACCTCATTCGCCATCACCAGGCGGGGGTGGCCAgggggcgc > 2:975589/1‑145 (MQ=255) aGTCGACCATCGCCGCTGGCCCCTTGGTGCTTGACCTCAACCGCAAGCAGGCCACCCTCGACGAACAAGCCTTGGCCCTGACCGCCTACGAATACCGCATCCTCGAATACCTCATGCGCCATCACCAGCAGGTGGTGGCCAAGGATCGcc < 2:1174820/150‑1 (MQ=255) aTCGCCGCTGGCCCCTTGGTGCTTGACCTCAACCGCAAGCAGGCCACCCTCGACGAACAAGCCTTGGCCCTGACCGCCTACGAATACCGCATCCTCGAATACCTCATGCGCCATCACCAGCAGGTGGTGGCCAAGGATCGCCTGATGGAg < 2:385529/150‑1 (MQ=255) gccgcTGGCCCCTTGGTGCTTGACCTCAACCGCAAGCAGGCCACCCTCGACGAACAAGCCTTGGCCCTGACCGCCTACGAATACCGCATCCTCGAATACCTCATGCGCCATCACCAGCAGGTGGTGGCCAAGGATCGCCTGATGGAGCAg < 1:566673/150‑1 (MQ=255) ccgcTGGCCCCTTGGTGCTTGACCTCAACCGCAAGCAGGCCACCCTCGACGAACAAGCCTTGGCCCTGACCGCCTACGAATACCGCATCCTCGAATACCTCATGCGCCATCACCAGCAGGTGGTGGCCAAGGATCGCCTGATGGAGCAGt < 2:1082348/150‑1 (MQ=255) tGGCCCCTTGGTGCTTGACCTCAACCGCAAGCAGGCCACCCTCGACGAACAAGCCTTGGCCCTGACCGCCTACGAATACCGCATCCTCGAATACCTCATGCGCCATCACCAGCAGGTGGTGGCCAAGGATGGCCTAATGGAGCAGTTGTa > 2:578088/1‑150 (MQ=255) cTTGGTGCTTGACCTCAACCGCAAGCAGGCCACCCTCGACGAACAAGCCTTGGCCCTGACCGCCTACGAATACCGCATCCTCGAATACCTCATGCGCCATCACCAGCAGGTGGTGGCCAAGGATCGCCTGATGGAGCAGTTGTACCCAgg > 1:35137/1‑150 (MQ=255) gTGCTTGACCTCAACCGCAAGCAGGCCACGTCCGACGAACAAGCCTTGGCCCTGACCGCCTACGAATACCGCATCCTCGAATACCTCACGCGCCATCACCAGCAGGTGGTGGCCAAGGATCGCCTGATGGAGCAGTTGTACCCAGGAGAc > 1:31118/1‑150 (MQ=255) gTGCTTGACCTCAACCGCAAGCAGGCCACCCTCGACGAACAAGCCTTGGCCCTGACCGCCTACGAATACCGCATCCTCGAATACCTCATGCGCCATCACCAGCAGGTGGTGGCCAAGGATCGCCTGATGGAGCAGTTGTACCCAGGAGAc < 2:35137/150‑1 (MQ=255) tCAACCGCAAGCAGGCCACCCTCGACGAACAAGCCTTGGCCCTGACCGCCTACGAATACCGCATCCTCGAATACCTCATGCGCCATCACCAGCAGGTGGTGGCCAAGGATCGCCTGATGGAGCAGTTGTACCCAGGAGACGaa > 1:982785/1‑143 (MQ=255) tCAACCGCAAGCAGGCCACCCTCGACGAACAAGCCTTGGCCCTGACCGCCTACGAATACCGCATCCTCGAATACCTCATGCGCCATCACCAGCAGGTGGTGGCCAAGGATCGCCTGATGGAGCAGTTGTACCCAGGAGACGaa < 2:982785/143‑1 (MQ=255) tCAACCGCAAGCAGGCCACCCTCGACGAACAAGCCTTGGCCCTGACCGCCTACGAATACCGCATCCTCGAATACCTCATGCGCCATCACCAGCAGGTGGTGGCCAAGGATCGCCTGATGGAGCAGTTGTACCCAGGAGACGAAGAGcgcg > 1:836204/1‑150 (MQ=255) tCAACCGCAAGCAGGCCACCCTCGACGAACAAGCCTTGGCCCTGACCGCCTACGAATACCGCATCCTCGAATACCTCATGCGCCATCACCAGCAGGTGGTGGCCAAGGATCGCCTGATGGAGCAGTTGTACCCAGGAGACGAAGAGcgcg > 2:1121111/1‑150 (MQ=255) aaCCGCAAGCAGGCCACCCTCGACGAACAAGCCTTGGCCCTGACCGCCTACGAATACCGCATCCTCGAATACCTCATGCGCCATCACcagca < 1:1127122/92‑1 (MQ=255) aaCCGCAAGCAGGCCACCCTCGACGAACAAGCCTTGGCCCTGACCGCCTACGAATACCGCATCCTCGAATACCTCATGCGCCATCACcagca > 2:1127122/1‑92 (MQ=255) cGCAAGCAGGCCACCCTCGACGAACAAGCCTTGGCCCTGACCGCCTACGAATACCGCATCCTCGAATACCTCATGCGCCATCACCAGCAGGTGGTGGCCAAGGATCGc < 2:363978/108‑1 (MQ=255) cGCAAGCAGGCCACCCTCGACGAACAAGCCTTGGCCCTGACCGCCTACGAATACCGCATCCTCGAATACCTCATGCGCCATCACCAGCAGGTGGTGGCCAAGGATCGc > 1:363978/1‑108 (MQ=255) gCCACCCTCGACGAACAAGCCTTGGCCCTGACCGCCTACGAATACCGCATCCTCGAATACCTCATGCGCCATCACCAGCAGGTGGTGGCCAAGGATCGCCTGATGGAGCAGTTGTACCCAGGAGACGAAGAGCGCGACCCCAATGTCATc < 1:769246/150‑1 (MQ=255) gCCACCCTCGACGAACAAGCCTTGGCCCTGACCGCCTACGAATACCGCATCCTCGAATACCTCATGCGCCATCACCAGCAGGTGGTGGCCAAGGATCGCCTGATGGAGCAGTTGTACCCAGGAGAAGAAGAGCGCGACCACAATGTCATc > 1:69031/1‑150 (MQ=255) ccTCGACGAACAAGCCTTGGCCCTGACCGCCTACGAATACCGCATCCTCGAATACCTCATGCGCCATCACCAGCAGGTGGTGGCCAAGGATCGCCTGATGGAGCAGTTGTACCCAGGAGACGAAGAGCGCGACCCCAATGTCATCGAAGt > 2:219678/1‑150 (MQ=255) gacgaACAAGCCTTGGCCCTGACCGCCTACGAATACCGCATCCTCGAATACCTCATGCGCCATCACCAGCAGGTGGTGGCCAAGGATc < 1:13909/88‑1 (MQ=255) gacgaACAAGCCTTGGCCCTGACCGCCTACGAATACCGCATCCTCGAATACCTCATGCGCCATCACCAGCAGGTGGTGGCCAAGGATc > 2:13909/1‑88 (MQ=255) gacgaACAAGCCTTGGCCCTGACCGCCTACGAATACCGCATCCTCGAATACCTCATGCGCCATCACCAGCAGGTGGTGGCCAAGGATCGCCTGATGGAGCAGTTGTGCCCAGGAGACGAAGAGCGCGACCCCAATGTCATCGAAGTGCTg > 1:467217/1‑150 (MQ=255) acgaACAAGCCTTGGCCCTGACCGCCTACGAATACCGCATCCTCGAATACCTCATGCGCCATCACCAGCAGGTGGTGGCCAAGGATCGCCTGATGGAGCAGTTGTACCCAGGAGACGAAGAGCGCGACCCCAATGTCATCGAAGTGCTgg < 1:219678/150‑1 (MQ=255) gCCCTGACCGCCTACGAATACCGCATCCTCGAATACCTCATGCGCCATCACCAGCAGGTGGTGGCCAAGGATCGCCTGATGGAGCAGTTGTACCCAGGAGACGAAGAGCGCGACCCCAATGTCATCGAAGTGCTGGTTGGCCGCCTgcgc < 1:1157466/150‑1 (MQ=255) cGCCTACGAATACCGCATCCTCGAATACCTCATGCGCCATCACCAGCAGGTGGTGGCCAAGGATCGCCTGATGGAGCAGTTGTACCCAGGAGACGAAGAGCGCGACCCCAATGTCATCGAAGTGCTGGTTGGCCGCCTGCGCCGCAAGCt > 1:347129/1‑150 (MQ=255) aCGAATACCGCATCCTCGAATACCTCATGCGCCATCACCAGCAGGTGGTGGCCAAGGATCGCCTGATGGAGCAGTTGTACCCAGGAGACGAAGAGCGCGACCCCAATGTCATCGAAGTGCTGGTTGGCCGCCTGCGCCGCAAGCTTGAAg < 1:1121111/150‑1 (MQ=255) cGAATACCGCATCCTCGAATACCTCATGCGCCATCACCAGCAGGTGGTGGCCAAGGATCGCCTGATGGAGCAGTTGTACCCAg < 2:402604/83‑1 (MQ=255) cGAATACCGCATCCTCGAATACCTCATGCGCCATCACCAGCAGGTGGTGGCCAAGGATCGCCTGATGGAGCAGTTGTACCCAg > 1:402604/1‑83 (MQ=255) tggAATACCTCATGCGCCATCACCAGCAGGTGGTGGCCAAGGATCGCCTGGTGGAGCAGTTGTACCCAGGAGACGAAGAGCGCGACCCCAATGTCAGCGAAGTGCTGGTTGGCCGCCTGCGCCGCAAGCTTGAAGGCGAGCGCGGCTTCa > 2:89368/3‑150 (MQ=255) tACCTCATGCGCCATCACCAGCAGGTGGTGGCCAAGGATCGCCTGATGGAGCAGTTGTGCCCAGGAGACGAAGAGCGCGACCCCAATGTCATCGAAGTGCTGGTTGGCCGCCTGCGCCGCAAGCTTGAAGGCGAGCGCGGCTTCAAAccc < 2:467217/150‑1 (MQ=255) cTCATGCGCCATCACCAGCAGGTGGTGGCCAAGGATCGCCTGATGGAGCAGtt > 2:137011/1‑53 (MQ=255) cTCATGCGCCATCACCAGCAGGTGGTGGCCAAGGATCGCCTGATGGAGCAGtt < 1:137011/53‑1 (MQ=255) ttggcCACCACCTGCTGGTGATGGCCAAGGATCGCCTGATGGAGCAGTTGTACCCAGGAGACGAAGAGCGCGACCCCAATGTCATCGAAGTGCTGGTTGGCCGCCTGCGCCGCAAGCTTGAAGGCGAGCGCGGc < 1:815321/131‑1 (MQ=255) ttggcCACCACCTGCTGGTGATGGCCAAGGATCGCCTGATGGAGCAGTTGTACCCAGGAGACGAAGAGCGCGACCCCAATGTCATCGAAGTGCTGGTTGGCCGCCTGCGCCGCAAGCTTGAAGGCGAGCGCGGc > 2:815321/4‑134 (MQ=255) ttggcCACCACCTGCTGGTGATGGCCAAGGATCGCCTGATGGAGCAGTTGTACCCAGGAGACGAAGAGCGCGACCCCAATGTCATCGAAGTGCTGGTTGGCCGCCTGCGCCGCAAGCTTGAAGGCGAGCGCGGCTTCAAACCCATCGa > 1:813649/4‑148 (MQ=255) ttggcCACCACCTGCTGGTGATGGCCAAGGATCGCCTGATGGAGCAGTTGTACCCAGGAGACGAAGAGCGCGACCCCAATGTCATCGAAGTGCTGGTTGGCCGCCTGCGCCGCAAGCTTGAAGGCGAGCGCGGCTTCAAACCCATCGa < 2:813649/145‑1 (MQ=255) cATCACCAGCAGGTGGTGGCCAAGGATCGCCAGATGGAGCAGTTGTACCCAGGAGACGAAGAGCGCGACCCCAATGTCATCGAAGTGCTGGTTGGCCGCCTGCGCCGCAAGCTTGAAGGCGAGCGCGGCTTCAAACCCATCGACACGGTg > 1:527458/1‑150 (MQ=255) | CTGTTGCGCCGCTCCAGTGGTTTCACCCAGTCGACCATCGCCGCTGGCCCCTTGGTGCTTGACCTCAACCGCAAGCAGGCCACCCTCGACGAACAAGCCTTGGCCCTGACCGCCTACGAATACCGCATCCTCGAATACCTCATGCGCCATCACCAGCAGGTGGTGGCCAAGGATCGCCTGATGGAGCAGTTGTACCCAGGAGACGAAGAGCGCGACCCCAATGTCATCGAAGTGCTGGTTGGCCGCCTGCGCCGCAAGCTTGAAGGCGAGCGCGGCTTCAAACCCATCGACACGGTG > NC_002947/1361285‑1361581 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |