| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,414,524 | C→T | 9.3% | intergenic (‑50/‑210) | PP_1236 ← / → dapA‑I | glycine cleavage system transcriptional repressor/4‑hydroxy‑tetrahydrodipicolinate synthase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,414,524 | 0 | C | T | 9.3% | 142.5 / 2.2 | 51 | intergenic (‑50/‑210) | PP_1236/dapA‑I | glycine cleavage system transcriptional repressor/4‑hydroxy‑tetrahydrodipicolinate synthase |
| Reads supporting (aligned to +/- strand): ref base C (20/26); new base T (3/2); total (23/28) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.47e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TTTCGAAGGCAGCGCGGCTGAGGACGTTGGCCAGCTCCATGGGGTTCGGGCCCAGGGCACTGATGACAAGGAATTGTTCGCGGACGGTGGGGGTGGACATGCAGCATTCCTAAAGCGATGAGCGGTCGGCACAGGACGGGCAAATGCCTCCTGTCGGCAGGGCCCGGGGCTCGCATGCGAGGTCTTGGACGCTGGCGGGGAGCAAGGTCGACGGCCCGGCGGGCCGCGCTGCACCGATCAAAGGGCCAAGGGTAGCGAAATAAGCCGCCGAGGGGAATGCTCCACCCGCCTGCTTCGCT > NC_002947/1414375‑1414673 | tttCGAAGGCAGCGCGGCTGAGGACGTTGGCCAGCTCCATGGGGTTCGGGCCCAGGGCACTGATGACAAGGAATTGTTCGCGGACGGTGGGGGTGGACATGCAGCATTCCTAAAGCGATGAGCGGTCGGCACAGGACGGGCAAATGcctc < 1:650187/150‑1 (MQ=255) cAGCGCGGCTGAGGACGTTGGCCAGCTCCATGGGGTTCGGGCCCAGGGCACTGATGACAAGGAATTGTTCGCGGACGGTGGGGGTGGACATGCAGCATTCCTAAAGCGATGAGCGGTCGGCACAGGACGGGCAAATGCCTCCTGTCGGCa < 2:994809/150‑1 (MQ=255) gAGGACGTTGGCCAGCTCCATGGGGTTCGGGCCCAGGGCACTGATGACAAGGAATTGTTCGCGGACGGTGGGGGTGGACATGCAGCATTCCTAAAGCGATGAGCGGTCGGCACAGGACGGGCAAATGCCTCCTGTCGGCAGGGCCCgtgg > 1:650095/1‑147 (MQ=255) gACGTTGGCCAGCTCCATGGGGTTCGGGCCCAGGGCACTGATGACAAGGAATTGTTCGCGGACGGTGGGGGTGGACATGCAGCATTCCTAAAGCGATGAGCGGTTGGCACAGGACGGGCAAATGCCTCCTGTCGGCAGGGCCCGGGGCTc < 1:542120/150‑1 (MQ=255) gACGTTGGCCAGCTCCATGGGGTTCGGGCCCAGGGCAATGATGACAAGGAATTGTTCGCGGACGGTGGGGGTGGACATGCAGCATTCCTAAAGCGATGAGCGGTCGGCACAGGACGGGCAAATGCCTCCTGTCGGCAGGGCCCGGGGCTc < 1:433725/150‑1 (MQ=255) cGTTGGCCAGCTCCATGGGGTTCGGGCCCAGGGCACTGATGACAAGGAATTGTTCGCGGACGGTGGGGGTGGACATGCAGCATTCCTAAAGCGATGAGCGGTCGGCACAGGACGGGCAAATGCCTCCTGTCGGCAGGGCCCGGGGCTCGc < 1:1022669/150‑1 (MQ=255) ggCCAGCTCCATGGGGTTCGGGCCCAGGGCACTGATGACAAGGAATTGTTCGCGGACGGTGGGGGTGGACATGCAGCATTCCTAAAGCGATGAGCGGTCGGCACAGGACGGGCAAATGCCTCCTGTCGGCAGGGCCCGGGGCTCGCATGc < 2:606043/150‑1 (MQ=255) ccAGCTCCATGGGGTTCGGGCCCAGGGCACTGATGACAAGGAATTGTTCGCGGACGGTGGGGGTGGACATGCAGCATTCCTAAAGCGATGAGCGGTCGGCACAGGACGGGCAAATGCCTCCTGTCGGCAGGGCCCGGGGCTCGCATGCGa < 1:458574/150‑1 (MQ=255) cTCCATGGGGTTCGGGCCCAGGGCACTGATGACAAGGAATTGTTCGCGGACGGTGGGGGTGGACATGCAGCATTCCTAAAGCGATGAGCGGTCGGCACAGGACGGGCAAATGCCTCCTGTCGGCAGGGCCCGGGGCTCGCATGCGAGGTc > 1:194823/1‑150 (MQ=255) cATGGGGTTCGGGCCCAGGGCACTGATGACAAGGAATTGTTCGCGGACGGTGGGGGTGGACATGCAGCATTCCTCAAGCGATGAGCGGTCGGCACAGGCAGGGGAGATGCGGTCTTGCGGCAGGGCCCGGGGCTCGCATGCGAGGTCTTg > 1:1172977/1‑150 (MQ=255) aTGGGGTTCGGGCCCAGGGCACTGATGACAAGGAATTGTTCGCGGACGGTGGGGGTGGACATGCAGCATTCCTAAAGCGATGAGCGGTCGGCACAGGACGGGCAAATGCCTTCTGTCGGCAGGGCCCGGGGCTCGCATGCGAGGTCTTgg > 1:1154095/1‑150 (MQ=255) aTGGGGTTCGGGCCCAGGGCACTGATGACAAGGAATTGTTCGCGGACGGTGGGGGTGGACATGCAGCATTCCTAAAGCGATGAGCGGTCGGCACAGGACGGGCAAATGCCTTCTGTCGGCAGGGCCCGGGGCTCGCATGCGAGGTCTTgg > 1:1154502/1‑150 (MQ=255) tGGGGTTCGGGCCCAGGGCACTGATTACAAGGAATTGTTCGCGGACGGTGGGGGTGGACATGCAGCATTCCTAAAGCGATGAGCGGTCGGCACAGGACGGGCAAATGCCTCCTGTCGGCAGGGCCCGGGGCTCGCATGCGAGGTCTTGGa < 1:302736/150‑1 (MQ=255) gggTTCGGGCCCAGGGCACTGATGACAAGGAATTGTTCGCGGACGGTGGGGGTGGACATGCAGCATTCCTAAAGCGATGAGCGGTCGGCACAGGACGGGCAAATGCCTCCTGTCGGCAGGGCCCGGGGCTCGCATGCGAGGTCTTGGACg < 1:803512/150‑1 (MQ=255) ttCGGGCCCAGGGCACTGATGACAAGGAATTGTTCGCGGACGGTGGGGGTGGACATGCAGCATTCCTAAAGCGATGAGCGGTCGGCACAGGACGGGCAAATGCCTCCTGTCGGCAGGGCCCGGGGCTCGCATGCGAGGTCTTGGACGCTg > 1:574131/1‑150 (MQ=255) cccAGGGCACTGATGACAAGGAATTGTTCGCGGACGGTGGGGGTGGACATGCAGCATTCCTAAAGCGATGAGCGGTCGGCACAGGACGGGCAAATGCCTTCTGTCGGCAGGGCCCGGGGCTCGCATGCGAGGTCTTGGACGCTGGCgaca < 2:1154502/150‑4 (MQ=255) cccAGGGCACTGATGACAAGGAATTGTTCGCGGACGGTGGGGGTGGACATGCAGCATTCCTAAAGCGATGAGCGGTCGGCACAGGACGGGCAAATGCCTTCTGTCGGCAGGGCCCGGGGCTCGCATGCGAGGTCTTGGACGCTGGCgaca < 2:1154095/150‑4 (MQ=255) ccAGGGCACTGATGACAAGGAATTGTTCGCGGACGGTGGGGGTGGACATGCAGCATTCCTAAAGCGATGAGCGGTCGGCACAGGACGGGCAAATGCCTCCTGTCGGCAGGGCCCGGGGCTCGCATGCGAGGTCTTGGACGCTGGCGGGGa < 1:455053/150‑1 (MQ=255) ccAGGGCACTGATGACAAGGAATTGTTCGCGGACGGTGGGGGTGGACATGCAGCATTCCTAAAGCGATGAGCGGTCGGCACAGGACGGGCAAATGCCTCCTGTCGGCAGGGCCCGGGGCTCGCATGCGAGGTCTTGGACGCTGGCGGGGa < 2:1006830/150‑1 (MQ=255) aGGGCACTGATGACAAGGAATTGTTCGCGGACGGTGGGGGTGGACATGCAGCATTCCTAAAGCGATGAGCGGTCGGCACAGGACGGGCAAATGCCTCCTGTCGGCAGGGCCCGGGGCTCGCATGCGAGGTCTTGGACGCTGGCGGGGAGc > 1:597583/1‑150 (MQ=255) ggCACTGATGACAAGGAATTGTTCGCGGACGGTGGGGGTGGACATGCAGCATTCCTAAAGCGATGAGCGGTCGGCACAGGACGGGCAAATGCCTCCTGTCGGCAGGGCCCGGGGCTCGCATGCGAGGTCTTGGACGCTGGCGGGGAGCaa < 2:384144/150‑1 (MQ=255) tgatgaCAAGGAACTGTTCGCGGACGGTGGGGGTGGACATGCAGCATTCCTAAAGCGATGAGCGGTCGGCACAGGACGGGCAAATGCCTCCTGTCGGCAGGGCCCGGGGCTCGCATGCGAGGTCTTGGACGCTGGCGGGGAGCAAGGTCg > 2:1010676/1‑150 (MQ=255) tgaCAAGGAATTGTTCGCGGACGGTGGGGGTGGACATGCAGCATTCCTAAAGCGATGAGCGGTCGGCACAGGACGGGCAAATGCCTCCTGTCGGCAGGGCCCGGGGCTCGCATGCGAGGTCTTGGACGCTGGCGGGGAGCAAGGTCGACg < 2:597583/150‑1 (MQ=255) cAAGGAATTGTTCGCGGACGGTGGGGGTGGACATGCAGCATTCCTAAAGCGATGAGCGGTCGGCACAGGACGGGCAAATGCCTCCTGTCGGCAGGGCCCGGGGCTCGCATGCGAGGTCTTGGACGCTGGCGGGGAGCAAGGTCGACGGcc > 1:136738/1‑150 (MQ=255) aTTGTTCGCGGACGGTGGGGGTGGACATGCAGCATTCCTAAAGCGATGAGCGGTCGGCACAGGACGGGCAAATGCCTCCTGTCGGCAGGGCCCGTGGCTCGCATGCGAGGTCTTGGACGCTGGCGGGGAGCAAGGTCGACGGCCcggcgg < 2:650095/150‑1 (MQ=255) ctcgGACGGTGGGGGTGGACATGCAGCATTCCTAAAGCGATGAGCGGTCGGCACAGGACGGGCAAATGCCTCCTGTCTGCAGGGCCCGGGGCTCGCATGCGAGGTCTTGGACGCTGGCGGGGAGCAAGGTCGACGGCCCGGCGGGCcgcg < 2:520139/148‑1 (MQ=255) tGGGGGTGGACATGCAGCATTCCTAAAGCGATGAGCGGTCGGCACAGGACGGGCAAATGCCTCCTGTCGGCAGGGCCCGGGGCTCGCATGCGAGGTCt > 2:518472/1‑98 (MQ=255) tGGGGGTGGACATGCAGCATTCCTAAAGCGATGAGCGGTCGGCACAGGACGGGCAAATGCCTCCTGTCGGCAGGGCCCGGGGCTCGCATGCGAGGTCt < 1:518472/98‑1 (MQ=255) aCATGCAGCATTCCTAAAGCGATGAGCGGTCGGCACAGGACGGGCAAATGCCTCCTGTCGGCAGGGCCCGGGGCTCGCATGCGAGGTCTTGGACGCTGGCGGGGAGCAAGGTCGACGGCCCGGCGGGCCGCGCTGCACCGATCAAAGGGc < 1:1031355/150‑1 (MQ=255) cATGCAGCATTCCTAAAGCGATGAGCGGTCGGCACAGGACGGGCAAATGCCTCCTGTCGGCAGGGCCCGGGGCTCGCATGCGAGGTCTTGGACGCTGGCGGGGAGCAAGGTCGACGGCCCGGCGGGCCGCGCTGCACCGATCAAAGGGcc > 1:658215/1‑150 (MQ=255) aTGCAGCATTCCTAAAGCGATGAGCGGTCGGCACAGGACGGGCAAATGCCTCCTGTCGGCAGGGCCCGGGGCTCGCATGCGAGGTCTTGGACGCTGGCGGGGAGCAAGGTCGACGGCCCGGCGGGCCGCGCTGCACCGATCAAAGGGCCa > 1:1031868/1‑150 (MQ=255) gcagcaTTCCTAAAGCGATGAGCGGTCGGCACAGGACGGGCAAATGCCTCCTGTCGGCAGGGCCCGGGGCTCGCATGCGAGGTCTTGGACGCTGGCgg < 1:1179035/98‑1 (MQ=255) gcagcaTTCCTAAAGCGATGAGCGGTCGGCACAGGACGGGCAAATGCCTCCTGTCGGCAGGGCCCGGGGCTCGCATGCGAGGTCTTGGACGCTGGCgg > 2:1179035/1‑98 (MQ=255) agcaTTCCTAAAGCGATGAGCGGTCGGCACAGGACGGGCAAATGCCTCCTGTCGGCAGGGCCCGGGGCTCGCATGCGAGGTCTTGGACGCTGGCGGGGAGCAAGGTCGACGGCCCGGCGGGCCGCGCTGCACCGATCAAAGGGc < 2:1133592/144‑1 (MQ=255) agcaTTCCTAAAGCGATGAGCGGTCGGCACAGGACGGGCAAATGCCTCCTGTCGGCAGGGCCCGGGGCTCGCATGCGAGGTCTTGGACGCTGGCGGGGAGCAAGGTCGACGGCCCGGCGGGCCGCGCTGCACCGATCAAAGGGc > 1:1133592/1‑144 (MQ=255) cTAAAGCGATGAGCGGTCGGCACAGGACGGGCAAATGCCTCCTGTCGGCAGGGCCCGGGGCTCGCATGCGAGGTCTTGGACGCTGGCGGGGAGCAAGGTCGACGGCCCGGCGGGCCGCGCTGCACCGATCAAAGGGCCAAGGGTAGCGaa > 1:646800/1‑150 (MQ=255) cTAAAGCGATGAGCGGTCGGCACAGGACGGGCAAATGCCTCCTGTCGGCAGGGCCCGGGGCTCGCATGCGAGGTCTTGGACGCTGGCGGGGAGCAAGGTCGACGGCCCGGCGGGCCGCGCTGCACCGATCAAAGGGCCAAGGGTAGCGaa > 2:719455/1‑150 (MQ=255) aaGCGATGAGCGGTCGGCACAGGACGGGCAAATGCCTCCTGTCGGCAGGGCCCGGGGCTCGCATGCGAGTTCTTGGACGCTGGCGGGTAGCAAGGTCGACGGCCCGGCGGGCCGCGCTGCACCGCTCAACGGGCGAAGGGTAGCgcgcta > 1:128398/1‑145 (MQ=255) aGCGATGAGAGGTCCGCACAGGACGGCAAAATGCCTCCTGTCGGCAGGGCCAAGGGATCGCCTGCGAGGTCTTGGACGCTTGCGGGGAGCAAGGTCGACGGCCCGGCGGGCCGCGCTGCACCGATCAAAGGGCCAAGGGTAGCGAAATaa < 2:136738/150‑1 (MQ=255) gagAGCGGTCGGCACAGGACGGGCAAATGCCTCCTGTCGGCAGGGCCCGGGGCTCGCATGCGAGGTCTTGGACGCTGGCGGGGAGCAAGGTCGACGGCCCGGCGGGCCGCGCTGCACCGATCAAAGGGCCAAGGGTAGCGAAATAAgccg > 2:1065781/3‑150 (MQ=255) aTGAGCGGTCGGCACAGGACGGGCAAATGCCTCCTGTCGGCAGGGCCCGGGGCTCGCATGCGAGGTCTGGGACGCTGGCGGGGAGCAAGGTCGACGGCCCGGCGGGCCGCGCTGCACCGATCAAAGGGCCAAGGGTAGCGAAATAAgccg < 2:194823/150‑1 (MQ=255) tGAGCTGTCTGCACAGGACGGGCAAATGCCTCCTGTCGGCAGGGCCCGGGGCTCGCATGCGAGGTCTTGGACGCTGGCgg > 2:621379/1‑80 (MQ=255) tGAGCGGTCGGCACAGGACGGGCAAATGCCTCCTGTCGGCAGGGCCCGGGGCTCGCATGCGAGGTCTTGGACGCTGGCgg < 1:621379/80‑1 (MQ=255) tGAGCGGTCGGCACAGGACGGGCAAATGCCTCCTGTCGGCAGGGCCCGGGGCTCGCATGCGAGGTCTTGGACGCTGGCGGGGAGCAAGGt > 2:438597/1‑90 (MQ=255) tGAGCGGTCGACACAGGACGGGCAAATGCCTCCTGTCGGCAGGGCCCGGGGCTCGCATGCGAGGTCTTGGACGCTGGCGGGGAGCAAGGt < 1:438597/90‑1 (MQ=255) gTCGGCACAGGACGGGCAAATGCCTCCTGTCGGCAGGGCCCGGGGCTCGCATGCGAGGTCTTGGACGCTGGCGGGGAGCAAGGTCGACGGCCCGGCGGGCCGCGCTGCACCGATCAAAGGGCCAAGGGTAGCGAAATAAGCCGCCGAggg < 2:658215/150‑1 (MQ=255) ggCACAGGACGTGCAAATGCCTCCTGTCGGCAGGGCCCGGGGCTCGCATGCGAGGTCTTGGACGCTGGCGGGGAGCAAGGTCGACGGCCCGGCGGGCCGCGCTGCACCGATCAAAGGGCCAAGGGTAGCGAAATAAGCCGCCGAGGGGaa < 1:65826/150‑1 (MQ=255) gACGGGCAAATGCCTCCTGTCGGCAGGGCCCGGGGCTCGCATGCGAGGTCTTGGACGCTGGCGGGGAGCAAGGTCGACGGCCCGGCGGGCCGCGCTGCAcc < 2:1041198/101‑1 (MQ=255) gACGGGCAAATGCCTCCTGTCGGCAGGGCCCGGGGCTCGCATGCGAGGTCTTGGACGCTGGCGGGGAGCAAGGTCGACGGCCCGGCGGGCCGCGCTGCAcc > 1:1041198/1‑101 (MQ=255) gCAAATGCCTCCTGTCGGCAGGGCCCGGGGCTCGCATGCGAGGTCTTGGACGCTGGCGGGGAGCAAGGTCGACGGCCCGGCGGGCCGCGCTGCACCGATCAAAGGGCCAAGGGTAGCGAAATAAGCCGCCGAGGGGAATGCTCCACCCGc > 2:605371/1‑150 (MQ=255) cAAATGCCTCCTGTCGGCAGGGCCCGGGGCTCGCATGCGAGGTCTTGGACGCTGGCGGGGAGCAAGGTCGACGGCCCGGCGGGCCGCGCTGCACCGATCAAAGGGCCAAGGGTAGCGAAATAAGCCGCCGAGGGGAATGCTCCACCCGcc > 2:457500/1‑150 (MQ=255) gCCTCCTGTCGGCAGGGCCCGGGGCTCGCATGCGAGGTCTTGGACGCTGGCGGGGAGCAAGGTCGACGGCCCGGCGGGCCGCGCTGCACCGATCAAAGGGCCAAGGGTAGCGAAATAAGCCGCCGAGGGGAATGCTCCACCCGCCTGCtt < 2:477997/150‑1 (MQ=255) ctcctGTCGGCAGGGCGCGGGGCTCGCATGCGAGGTCTTGGACGCTGGCGGGGAGCAAGGTCGACGGCCCGGCGGGCCGCGCTGCACCGATCAAAGGGCCAAGGGTAGCGAAATAAGCCGCCGAGGGGAATGCTCCACCCGCCTGCTTc < 1:330420/149‑1 (MQ=255) ctcctGTCGGCAGGGCCCGGGGCTCGCATGCGAGGTCTTGGACGCTGGCGGGGAGCAAGGTCGACGGCCCGGCGGGCCGCGCTGCACCGATCAAAGGGCCAAGGGTAGCGAAATAAgccg > 2:1183879/1‑120 (MQ=255) ctcctGTCGGCAGGGCCCGGGGCTCGCATGCGAGGTCTTGGACGCTGGCGGGGAGCAAGGTCGACGGCCCGGCGGGCCGCGCTGCACCGATCAAAGGGCCAAGGGTAGCGAAATAAgccg < 1:1183879/120‑1 (MQ=255) ctcctGTCGGCAGGGCCCGGGGCTCGCATGCGAGGTCTTGGACGCTGGCGGGGAGCAAGGTCGACGGCCCGGCGGGCCGCGCTGCACCGATCAAAGGGCCAAGGGTAGCGAAATAAGCCGCCGAGGGGAATGCTCCACCCGCCTGCTTc > 2:330420/1‑149 (MQ=255) tcctGTCGGCAGGGCCCGGGGCTCGCATGCGAGGTCTTGGACGCTGGCGGGGAGCAAGGTCGACGGCCCGGCGGGCCGCGCTGCACCGATCAAAGGGCCAAGGGTAGCGAAATAAGCCGCCGAGGGGAATGCTCCACCCGCCTGCTTCGc > 2:405189/1‑150 (MQ=255) cctGTCGGCAGGGCCCGGGGCTCGCATGCGAGGTCTTGGACGCTGGCGGGGAGCAAGGTCGACGGCCCGGCGGGCCGCGCTGCACCGATCAAAGGGCCAAGGGTAGCGAAATAAGCCGCCGAGGGGAATGCTCCACCCGCCTGCTTCGCt < 2:1172977/150‑1 (MQ=255) | TTTCGAAGGCAGCGCGGCTGAGGACGTTGGCCAGCTCCATGGGGTTCGGGCCCAGGGCACTGATGACAAGGAATTGTTCGCGGACGGTGGGGGTGGACATGCAGCATTCCTAAAGCGATGAGCGGTCGGCACAGGACGGGCAAATGCCTCCTGTCGGCAGGGCCCGGGGCTCGCATGCGAGGTCTTGGACGCTGGCGGGGAGCAAGGTCGACGGCCCGGCGGGCCGCGCTGCACCGATCAAAGGGCCAAGGGTAGCGAAATAAGCCGCCGAGGGGAATGCTCCACCCGCCTGCTTCGCT > NC_002947/1414375‑1414673 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |