Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,435,232 | T→A | 7.8% | M247L (ATG→TTG) | PP_1256 ← | alpha‑ketoglutarate semialdehyde dehydrogenase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,435,232 | 0 | T | A | 7.8% | 153.8 / 3.4 | 51 | M247L (ATG→TTG) | PP_1256 | alpha‑ketoglutarate semialdehyde dehydrogenase |
Reads supporting (aligned to +/- strand): ref base T (27/20); new base A (2/2); total (29/22) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.70e-01 |
CTGGGTCAGCGAGGCGACGAAACCTTGTGCCAGTGCTTCGGCACGGGCTTGCAGGGCGGCGTCGAACAGGAACACCGGGTTGATCGAACTCATTTCGGCATACACCGGGATGGGCTCCGGGCGCGCCTGGGCGGCTTGGCACAGTGCCATGCCACCGCTGCGCGAGCCGGTGAAACCAACGGCCTTGATACGTGGGTCGCTGACCAGAGCAATGCCCACTTCGCGGCCGGAGCCATAAAGCAGCGAGAACACACCCTCCGGTAAGCCGCACTGCTTCACTGCTTGCGCCACTGCCTGG > NC_002947/1435083‑1435380 | cTGGGTCAGCGAGGCGACGAAACCTTGTGCCAGTGCTTCGGCACGGGCTTGCAGGGCGGCGTCGAACAGGAACACCGGGTTGATCGAACTCATTTCGGCATACACCGGGATGGGCTCCGGGCGCGCCTGGGCGGCTTGGCACAGtgccat < 1:441026/150‑1 (MQ=255) gCGACGAAACCTTGTGCCAGTGCTTCGGCACGGGCTTGCAGGGCGGCGTCGAACAGGAACACCGGGTTGATCGAACTCATTTCGGCATACACCGGGATGGGCTCCGGGCGCGCCTGGGCGGCTTGGCACAGTGCCATGCCACCGCTgcgc > 1:307900/1‑150 (MQ=255) gaAACCTTGTGCCAGTTCTTCGGCACGGGCTTGCAGGGCGGCGTCGCACAGGAACACCGGGTTGATCGAACTCATTTCGGCATCCACCGGGATGGGCTCCGGGCGCGCCTGGGCGGCTTGGCACAGTGCCATGCCACCGCTGCGCGAGcc > 2:141054/1‑150 (MQ=255) aaaCCTTGTGCCAGTGCTTCGGCACGGGCTTGCAGGGCGGCGTCGAACAGGAACACCGGGTTGATCGAACTCATTTCGGCATACACCGGGATGGGCTCCGGGCGCGCCTGGGCGGCTTGGCACAGTGCCATGCCACCGCTGCGCGAGCCg > 1:768648/1‑150 (MQ=255) ttGTGCCAGTGCTTCGGCACGGGCTTGCAGGGCGGCGTCGAACAGGAACACCGGGTTGATCGAACTCATTTCGGCATACACCGGGATGGGCTCCGGGCGCGCCTGGGCGGCTTGGCACAGTGCCATGCCACCGCTGCGCGAGCCGGTGaa < 2:1143224/150‑1 (MQ=255) tgggCCAGTGCTTCGGCACGGGCTTGCAGGGCGGCGTCGAACAGGAACACCGGGTTGATCGAACTCATTTCGGCATACACCGGGATGGGCTCCGGGCGCGCCTGGGCGGCTTGGCACAGTGCCATGCCACCGCTGCGCGAGCCGGTGaaa < 1:43012/147‑1 (MQ=255) gCCAGTGCGTCGGCACGGGCTTGCAGGGCGGCGTCGAACAGGAACACCGGGTTGATAGAACTCATTTCGGCATACACCGGGATGGGCTCCGGGCCCGCCTGGGCGGCTTGGCACAGTGCCATGCCACCGCTTCTCCAGTCGGTGAAACCa > 2:63223/1‑150 (MQ=255) gTGCTTCGGCACGGGCTTGCAGGGCGGCGTCGAACAGGAACACCGGGTTGATCGAACTCATTTCGGCATACACCGGGATGGGCTCCGGGCGCGCCTGGGCGGCTTGGCACAGTGCCATGCCACCGCTGCGCGAGCCGGTGAAACCAACgg < 1:323513/150‑1 (MQ=255) ttCGGCACGGGCTTGCAGGGCGGCGTCGAACAGGAACACCGGGTTGATCGAACTCATTTCGGCATACACCGGGATGGGCTCCGGGCGCGCCTGGGCGGCTTGGCACAGTGCCATGCCACCGCTGCGCGAGCCGGTGAAACCAACGGCCtt > 2:117651/1‑150 (MQ=255) gCACGGGCTTGCAGGGCGGCGTCGAACAGGAACACCGGGTTGATCGAACTCATTTCGGCATACACCGGGATGGGCTCCGGGCGCGCCTGGGCGGCTTGGCACAGTGCCATGCCACCGCTGCGCGAGCCGGTGAAACCAACGGCCTTGATa > 2:274270/1‑150 (MQ=255) cTTGCAGGGCGGCGTCGAACAGGAACACCGGGTTGATCGAACTCATTTCGGCATACACCGGGATGGGCTCCGGGCGCGCCTGGGCGGCTTGGCACAGTGCCATGCCACCGCTGCGCGAGCCGGTGAAACCAACGGCCTTGATACGTGGGt < 1:274270/150‑1 (MQ=255) cAGGGCGGCGTCGAACAGGAACACCGGGTTGATCGAACTCATTTCGGCATACACCGGGATGGGCTCCGGGCGCGCCTGGGCGGCTTGGCACAGTGCCATGCCACCGCTGCGCGAGCCGGTGAAACCAACGGCCTTGATACGTGGGTCGCt > 1:531702/1‑150 (MQ=255) ggcggcGTCGAACAGGAACACCGGGTTGATCGAACTCATTTCGGCATACACCGGGATGGGCTCCGGGCGCGCCTGGGCGGCTTGGCACAGTGCCATGCCACCGCTGCGCGAGCCGGTGAAACCAACGGCCTTGATACGTGGGTCGCTGAc < 2:307900/150‑1 (MQ=255) cgTCGAACAGGAACACCGGGTTGATCGAACTCATTTCGGCATACACCGGGATGGGCTCCGGGCGCGCCTGGGCGGCTTGGCACAGTGCCATGCCACCGCTGCGCGAGCCGGTGAAACCAACGGCCTTGATACGTGGGTCGCTGACCagag < 1:386521/150‑1 (MQ=255) aCAGGAACACCGGGTTGATCGAACTCATTTCGGCATACACCGGGATGGGCTCCGGGCGCGCCAGGGCGGCTTGGCACAGTGCCATAGCGCCGCTGCGGGAGCGTGTGTAACCAACGGCGTTTATATGGGGGTCGCTGACGAGGGGAATgg > 2:553845/1‑149 (MQ=255) cAGGAACACCGGGTTGATCGAACTCATTTCGGCATACACCGGGATGGGCTCCGGGCGCGCCTGGGCGGCTTGGCACAGTGCCATGCCACCGCTGCGCGAGCCGGTGAAACCAACGGCCTTGATACGTGGGTCGCTGACCAGAGCAATGcc < 1:117651/150‑1 (MQ=255) aGGAACACCGGGTTGATCGATCTCATTTCGGCATACACCGGGATGGGCTCCGGGCGCGCCTGGGCGGCTTGGCACAGTGCCATGCCACCGCTGCGCGAGCCGGTGAAACCAACGGCCTTGATACGTGGGTCGCTGACCa < 1:43735/139‑1 (MQ=255) aGGAACACCGGGTTGATCGAACTCATTTCGGCATACACCGGGATGGGCTCCGGGCGCGCCTGGGCGGCTTGGCACAGTGCCATGCCACCGCTGCGCGAGCCGGTGAAACCAGCGGCCTTGATACGTGGGTCGCTGACCa > 2:43735/1‑139 (MQ=255) gAACACCGGGTTGATCGAACTCATTTCGGCATACACCGGGATGGGCTCCGGGCGCGCCTGGGCGGCTTGGCACAGTGCCATGCCACCGCTGCGCGAGCCGGTGAAACCAACGGCCTTGATACGTGGGTCGCTGACCAGAGCAATg < 2:552487/145‑1 (MQ=255) gAACACCGGGTTGATCGAACTCATTTCGGCATACACCGGGATGGGCTCCGGGCGCGCCTGGGCGGCTTGGCACAGTGCCATGCCACCGCTGCGCGAGCCGGTGAAACCAACGGCCTTGATACGTGGGTCGCTGACCAGAGCAATg > 1:552487/1‑145 (MQ=255) ggTTGATCGAACTCATTTCGGCATACAGCGGGATGGGCTCCGGGCGCGCCTGGGCGGCTTGGCACAGTGCCATGCCACCGCTGCGCGAGCCGGTGAAACCAACGGCCTTGATACGTGGGTCGCTGACCAGAGCAATGCCCACTTccacgt < 1:947932/150‑6 (MQ=255) aTCGAACTCATTTCGGCATACACCGGGATGGGCTCCGGGCGCGCCTGGGCGGCTTGGCACAGTGCCATGCCACCGCTGCGCGAGCCGGTGAAACCAACGGCCTTGATACGTGGGTCGCTGACCAGAGCAATGcc < 1:922233/134‑1 (MQ=255) aTCGAACTCATTTCGGCATACACCGGGATGGGCTCCGGGCGCGCCTGGGCGGCTTGGCACAGTGCCATGCCACCGCTGCGCGAGCCGGTGAAACCAACGGCCTTGATACGTGGGTCGCTGACCAGAGCAATGcc > 2:922233/1‑134 (MQ=255) cGAACTCATTTCGGCATACACCGGGATGGGCTCCGGGCGCGCCTGGGCGGCTTGGCACAGTGCCATGCCACCGCTGCGCGAGCCGGTGAAACCAACGGCCTTGATACGTgg > 2:166924/1‑111 (MQ=255) cGAACTCATTTCGGCATACACCGGGATGGGCTCCGGGCGCGCCTGGGCGGCTTGGCACAGTGCCATGCCACCGCTGCGCGAGCCGGTGAAACCAACGGCCTTGATACGTgg < 1:166924/111‑1 (MQ=255) tCATTTCGGCATACACCGGGATGGGCTCCGGGCGCGCCTGGGCGGCATGGCACTGtgccaagcc > 2:1153331/1‑64 (MQ=37) tCATTTCGGCATACACCGGGATGGGCTCCGGGCGCGCCTGGGCGGCATGGCACTGtgccaagcc < 1:1153331/64‑1 (MQ=38) tttCGGCATACACCGGGATGGGCTCCGGGCGCGCCTGGGCGGCTTGGCACAGTGCCATGCCACCGCTGCGCGAGCCGGTGAAACCAACGGCCTTGATACGTGGGTCGCTGACCaga < 2:640748/116‑1 (MQ=255) tttCGGCATACACCGGGATGGGCTCCGGGCGCGCCTGGGCGGCTTGGCACAGTGCCATGCCACCGCTGCGCGAGCCGGTGAAACCAACGGCCTTGATACGTGGGTCGCTGACCaga > 1:640748/1‑116 (MQ=255) aTACACCGGGATGGGCTCCGGGCGCGCCTGGGCGGCTTGGCACAGTGCCATGCCACCGCTGCGCGAGCCGGTGAAACCAACGGCCTTGATACGTGGGTCGCTGACCAGAGCAATGCCCACTTCGCGGCCGGAGCCATAAAGCAGCGAGaa < 2:411196/150‑1 (MQ=255) aTACACCGGGATGGGCTCCGGGCGCGCCTGGGCGGCTTGGCACAGTGCCATGCCACCGCTGCGCGAGCCGGTGAAACCAACGGCCTTGATACGTGGGTCGCTGACCAGAGCAATGCCCACTTCGCGGCCGGAGCCATAAAGCAGCGAGaa < 2:768648/150‑1 (MQ=255) cacCGGGATGGGCTCCGGGCGCGCCTGGGCGGCTTGGCACAGTGCCATGCCACCGCTGCGCGAGCCGGTGAAACCAACGGCCTTGATACGTGGGTCGCTGACCAGAGCAATGCCCACTTCGCGGCCGGAGCCATAAAGCAGCGAGAacac > 2:1192559/1‑150 (MQ=255) acCGGGATGGGCTCCGGGCGCGCCTGGGCGTCTTGGCACAGTGCCATGCCACCGCTGCGCGAGCCGGTGAAACCAACGGCCTTGATACGTGGGTCGCTGACCAGAGCAATGCCCACTTCGCGGCCGGAGCCATAAAGCAGCGAGAacaca < 1:141054/150‑1 (MQ=255) acCGGGATGGGCTCCGGGCGCGCCTGGGCGGCTTGGCACAGTGCCATGCCACCGCTGCGCGATCCGGTGAAACCAACGGCCTTGATACGTGGGTCGTTGACCAGAGCAATGCCCACTTCGCGGTCGGAGCCATAATGCAGCGAGAacaca > 2:491029/1‑150 (MQ=255) acCGGGATGGGCTCCGGGCGCGCCTGGGCGGCTTGGCACAGTGCCATGCCACCGCTGCGCGAGCCGGTGAAACCAACGGCCTTGATACGTGGGTCGCTGACCAGAGCAATGCCCACTTCGCGGCCGGAGCCATAAAGCAGCGAGAacaca > 2:490488/1‑150 (MQ=255) gggCTCCGGGCGCGCCTGGGCGGCTTGGCACAGTGCCATGCCACCGCTGCGCGAGCCGGTGAAACCAACGGCCTTGATACGTGGGTCGCTGACCAGAGCAATGCCCACTTCGCGGCCGGAGCCATAAAGCAGCGAGAACACACCCTCCgg < 1:490488/150‑1 (MQ=255) tCCGGGCGCGCCTGGGCGGCTTGGCACAGTGCCATGCCACCGCTGCGCGAGCCGGTGAAACCAACGGCCTTGATACGTGGGTCGCTGACCAGAGCAATGCCCACTTCGCGGCCGGAGCCATAAAGCAGCGAGAACACACCCTCCGGTAAg > 1:484146/1‑150 (MQ=255) gcgcCTGGGCGGCTTGGCACAGTGCCATGTCACCGCTGCGCGAGCCGGTGAAACCAACGGCCTTGATACGTGGGTCGCTGa > 1:552139/1‑81 (MQ=255) gcgcCTGGGCGGCTTGGCACAGTGCCATGTCACCGCTGCGCGAGCCGGTGAAACCAACGGCCTTGATACGTGGGTCGCTGa < 2:552139/81‑1 (MQ=255) gcCTGGGCGGCTTGGCACAGTGCCATGCCACCGCTGCGCGAGCCGGTGAAACCAACGGCCTTGATACGTGGGTCGCTGACCAGAGCAATGCCCACTTCGCGGCCGGAGCCATAAAGCAGCGAGAacacac < 2:1094811/130‑1 (MQ=255) gcCTGGGCGGCTTGGCACAGTGCCATGCCACCGCTGCGCGAGCCGGTGAAACCAACGGCCTTGATACGTGGGTCGCTGACCAGAGCAATGCCCACTTCGCGGCCGGAGCCATAAAGCAGCGAGAacacac > 1:1094811/1‑130 (MQ=255) gcCTGGGCGGCTTGGCACAGTGCCATGCCACCGCTGCGCGAGCCGGTGAAACCAACGGCCTTGATACGTGGGTCGCTGACCAGAGCAATGCCCACTTCGCGGCCGGAGCCATAAAGCAGCGAGAACACACCCTCCGGTAAGCCGcactgc > 1:212300/1‑150 (MQ=255) gcCTGGGCGGCTTGGCACAGTGCCATGCCACCGCTGCGCGAGCCGGTGAAACCAACGGCCTTGATACGTGGGTCGCTGACCAGAGCAATGCCCACTTCGCGGCCGGAGCCATAAAGCAGCGAGAACACACCCTCCGGTAAGCCGcactgc > 1:730676/1‑150 (MQ=255) gcCTGGGCGGCTTGGCACAGTGCCATGCCACCGCTGCGCGAGCCGGTGAAACCAACGGCCTTGATACGTGGGTCGCTGACCAGAGCAATGCCAACTTCCCGGCCGGAGCCATAAAGCAGCGAGAACACACCCTCCGGTAAGCCGcactgc > 2:822970/1‑150 (MQ=255) ccTGGGCGGCTTGGCACAGTGCCATGCCACCGCTGCGCGAGCCGGTGACACCAACGGCCTTGATACGTGGGTCGCTGACCAGAGCAATGCCCACTTCACGGCCCGAGCCATAAAGCAGCGAGAACACACCCTCCGGTAACCCGcactgct > 2:525209/1‑150 (MQ=255) tGGGCGGCTTGGCACAGTGCCATGCCACCGCTGCGCGAGCCGGTGAAACCAACGGCCTTGATACGTGGGTCGCTGACCAGAGCAATGCCCACTTCGCGGCCGGAGCCATAAAGCAGCGAGAACACACCCTCCGGTAAGCCGcactgcttc > 1:420394/1‑150 (MQ=255) gtggcatGGCACTGTGCCAAGCCACCGCTGCGCGAGCCGGTGAAACCAACGGCCTTGATACGTGGGTCGCTGACCAGAGCAATGCCCACTTCGCGGCCGGAGCCATAAAGCAGCGAGAACACACCCTCCGGTAAGCCGcactgcttcact > 1:992814/7‑150 (MQ=255) gtggcATGGCACTGTGCCAAGCCGCCGCTGCGCGAGCCGGTGAAACCAACGGCCTTGATACGTGGGTCGCTGACCAGAGCAATGCCCACTTCGCGGCCGGa < 2:381293/99‑1 (MQ=38) gtggcATGGCACTGTGCCAAGCCGCCGCTGCGCGAGCCGGTGAAACCAACGGCCTTGATACGTGGGTCGCTGACCAGAGCAATGCCCACTTCGCGGCCGGa > 1:381293/3‑101 (MQ=38) catGGCACTGTGCCAAGCCACCGCTGCGCGAGCCGGTGAAACCAACGGCCTTGATACGTGGGTCGCTGACCAGAGCAATGCCCACTTCGCGGCCGGAGCCATAAAGCAGCGAGAACACACCCTCCGGTAAGCCGcactgcttcactgctt < 2:992814/148‑1 (MQ=255) ggCACAGTGCCATGCCACCGCTGCGCGAGCCGGTGAAACCAACGGCCTTGATACGTGGGTCGCTGACCAGAGCAATGCCCACTTCGCGGCCGGAGCCATAAAGCAGCGAGAACACACCCTCCGGTAAGCCGCACTGCTTCACTGCTTgcg < 2:484146/150‑1 (MQ=255) ggCACAGTGCCATGCCACCGCTGCGCGAGCCGGTGAAACCAACGGCCTTGATACGTGGGTCGCTGACCAGAGCAATGCCCACTTCGCGGCCGGAGCCATAAAGCAGCGAGAACACACCCTCCGGTAAGCCGCACTGCTTCACTGCTTgcg > 2:1068406/1‑150 (MQ=255) ggCACAGTGCCATGCCACCGCTGCGCGAGCCGGTGAAACCAACGGCCTTGATACGTGGGTCGCTGACCAGAGCAATGCCCACTTCGCGGCCGGAGCCATAAAGCAGCGAGAACACACCCTCCGGTAAGCCGCACTGCTTCACTGCTTgcg > 1:693120/1‑150 (MQ=255) acaGTGCCATGCCACCGCTGCGCGAGCCGGTGAAACCAACGGCCTTGATACGTGGGTCGCTGACCAGAGCAATGCCCACTTCGCGGCCGGAGCCATAAAGCAGCGAGAACACACCCTCCGGTAAGCCGCACTGCTTCACTGCTTGCGCCa > 1:460259/1‑150 (MQ=255) ccatgccaCCGCTGCGCGAGCCGGTGAAACCAACGGc > 1:665264/1‑37 (MQ=255) ccatgccaCCGCTGCGCGAGCCGGTGAAACCAACGGc < 2:665264/37‑1 (MQ=255) atgccaCCGCTGCGCGAGCCGGTGAAACCAACGGCCTTGATACGTGGGTCGCTGACCAGAGCAATGCCCACTTCGCGGCCGGAGCCATAAAGCAGCGAGAACACACCCTCCGGTAAGCCGCACTGCTTCACTGCTTGCGCCACTGCCTgg < 2:531702/150‑1 (MQ=255) tgccaCCGCTGCGCGAGCCGGTGAAACCAACGGCCTTGATACGTGGGTCGCTGACCAGAGCAATGCCCACTTCGCGGCCGGAGCCATAAAGCAGCGAGAACACACCCTCCGGTAAGc > 2:354655/1‑117 (MQ=255) tgccaCCGCTGCGCGAGCCGGTGAAACCAACGGCCTTGATACGTGGGTCGCTGACCAGAGCAATGCCCACTTCGCGGCCGGAGCCATAAAGCAGCGAGAACACACCCTCCGGTAAGc < 1:354655/117‑1 (MQ=255) | CTGGGTCAGCGAGGCGACGAAACCTTGTGCCAGTGCTTCGGCACGGGCTTGCAGGGCGGCGTCGAACAGGAACACCGGGTTGATCGAACTCATTTCGGCATACACCGGGATGGGCTCCGGGCGCGCCTGGGCGGCTTGGCACAGTGCCATGCCACCGCTGCGCGAGCCGGTGAAACCAACGGCCTTGATACGTGGGTCGCTGACCAGAGCAATGCCCACTTCGCGGCCGGAGCCATAAAGCAGCGAGAACACACCCTCCGGTAAGCCGCACTGCTTCACTGCTTGCGCCACTGCCTGG > NC_002947/1435083‑1435380 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |