Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,463,031 | A→T | 11.9% | intergenic (‑100/+42) | algI ← / ← algL | alginate O‑acetylase AlgI/alginate lyase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,463,031 | 0 | A | T | 11.9% | 114.5 / 8.2 | 42 | intergenic (‑100/+42) | algI/algL | alginate O‑acetylase AlgI/alginate lyase |
Reads supporting (aligned to +/- strand): ref base A (21/16); new base T (3/2); total (24/18) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.25e-01 |
GAAGATCGGCAAGAACAGGAACAGGAACACGTTGGACGAGAAGACCATCCCGGTTCTCCTAATTTGTTCACAGCATCCAGGGCAAAGCGCCCCCCAAACCCCCCAGTGCAAGGCTGGAAGGCAACTTAGATCCCTGTGGGAGCGGGCAAGCCCGCTCCCACAGGTTCCGCCCCCGCAATGGGGGTCAATTCATTTCTTGCTCTCTGCACTCGGGTCGTAGACCCGCGTCACATCGCCGCCCAGCCGGAAGCTGTTGAACGGCTGCATGTCGTGCTTGCGCTCAAGCGTGTCGCCAAC > NC_002947/1462884‑1463180 | gAAGATCGGCAAGAACAGGAACAGGAACACGTTGGACGAGAAGACCATCCCGGTTCTCCTAATTTGTTCACAGCATCCAGGGCAAAGCGCCCCCCAAACCCCCCAGTGCAAGGCTGGAAGGCAACTTAGATCCCTGTGGGAGCGGGCAAg > 1:114391/1‑150 (MQ=255) tCGGCAAGAACAGGAACAGGAACACGTTGGACGAGAAGACCATCCCGGTTCTCCTAATTTGTTCACAGCATCCAGGGCAAAGCGCCCCCCAAACCCCCCAGTGCAAGGCTGGAAGGCAACTTAGATCCCTGTGGGAGCGGGCAAGCCCGc > 2:857404/1‑150 (MQ=255) gCAAGAACAGGAACAGGAAAACGTTGGACGAGAAGACCATCCCGGTTCTCCTAATTTGTTCACAGCATCCAGGGCAAAGCGCCCCCCAAACCCCCCAGTGCAAGGCTGGAAGGCAACTTAGATCCCTGTGGGAGCGGGCAAGCCCGCGcc > 1:57074/1‑150 (MQ=255) aggaacaggaacACGTTGGACGAGAAGACCATCCCGGTTCTCCTAATTTGTTCACAGCATCCAGGGCAAAGCGCCCCCCAAACCCCCCAGTGCAAGGCTGGAAGGCAACTTAGATCCCTGTGGGAACGGGCAAGCCCGCTCCCACAGGtt > 1:345175/1‑150 (MQ=255) aCGAGAAGACCATCCCGGTTCTCCTAATTTGTTCACAGCATCCAGGGCAAAGCGCCCCCCAAACCCCCCAGTGCAAGGCTGGAAGGCAACTTAGATCCCTGTGGGAGCGGGCAAGCCCGCTCCCACAGGTTCCGCCCCCGCAATGGGGGt > 1:388016/1‑150 (MQ=255) agaagaCCATCCCGGTTCTCCTAATTTGTTCACAGCATCCAGGGCAAAGCGCCCCCCAAACCCCCCAGTGCAAGGCTGGAAGGCAACTTAGATCCCTGTGGGAGCGGGCAAGCCCGCTCCCACAGGTTCCGCCCCCGCAATGGGGGTCaa < 1:857404/150‑1 (MQ=255) gaCCATCCCGGTTCTCCTAATTTGTTAACAGCATCCAGGGCAAAGCGCCCCCCAAACCCCCCAGTGCAAGGCTGGAAGGCAACTTAGATCCCTGTGGGAGCGGGCAAGCCCGCTCCCACAGGTTCCGCCCCCGCAATGGGGGTCAATTCa > 1:822464/1‑150 (MQ=255) cATCCCGGTTCTCCTAATTTGTTCACAGCATCCAGGGCAAAGCGCCCCCCAAACCCCCCAGTGCAAGGCTGGAAGGCAACTTAGATCCCTGTGGGAGCGGGCAAGCCCGCTCCCACAGGTTCCGCCCCCGCAATGGGGGTCaa > 2:716668/1‑143 (MQ=255) cATCCCGGTTCTCCTAATTTGTTCACAGCATCCAGGGCAAAGCGCCCCCCAAACCCCCCAGTGCAAGGCTGGAAGGCAACTTAGATCCCTGTGGGAGCGGGCAAGCCCGCTCCCACAGGTTCCGCCCCCGCAATGGGGGTCaa < 1:716668/143‑1 (MQ=255) cccGGTTCTCCTAATTTGTTCACAGCATCCAGGGCAAAGCGCCCCCCAAACCCCCCAGTGCAAGGCTGGAAGGCAACTTAGATCCCTGTGGGAGCGGGCTTGCCCGCTCCCACAgg > 2:880676/1‑116 (MQ=255) cccGGTTCTCCTAATTTGTTCACAGCATCCAGGGCAAAGCGCCCCCCAAACCCCCCAGTGCAAGGCTGGAAGGCAACTTAGATCCCTGTGGGAGCGGGCTTGCCCGCTCCCACAgg < 1:880676/116‑1 (MQ=255) tcCTAATTTGTTCACAGCATCCAGGGCAAAGCGCCCCCCAAACCCCCCAGTGCAAGGCTGGAAGGCAACTTAGATCCCTGTGGGAGCGGGCAAGCCCGCTCCCACAGGTTCCGCCCCCGCAATGGGGGTCAATTCATTTCtt > 1:410691/1‑142 (MQ=255) tcCTAATTTGTTCACAGCATCCAGGGCAAAGCGCCCCCCAAACCCCCCAGTGCAAGGCTGGAAGGCAACTTAGATCCCTGTGGGAGCGGGCAAGCCCGCTCCCACAGGTTCCGCCCCCGCAATGGGGGTCAATTCATTTCtt < 2:410691/142‑1 (MQ=255) tcCTAATTTGTTCACAGCATCCAGGGCAAAGCGCCCCCCAAACCCCCCAGTGCAAGGCTGGAAGGCAACTTAGATCCCTGTGGGAGCGGGCAAGCCCGCTCCCACAGGTTCCGCCCCCGCAATGGGGGTCAATTCATTTCtt < 2:410593/142‑1 (MQ=255) tcCTAATTTGTTCACAGCATCCAGGGCAAAGCGCCCCCCAAACCCCCCAGTGCAAGGCTGGAAGGCAACTTAGATCCCTGTGGGAGCGGGCAAGCCCGCTCCCACAGGTTCCGCCCCCGCAATGGGGGTCAATTCATTTCtt > 1:410593/1‑142 (MQ=255) ttCACGGCATCCAGGGCAAAGCGCCCCCCAAACCCCCCAGTGCAAGGCTGGAAGGCAACTTAGATCCCTGTGGGAGCGGGCAAGCCCGCTCCCACAGGTTCCGCCCCCGCAATGGGGGTCAATTCATTTCTTGctctct < 2:720178/139‑1 (MQ=255) ttCACGGCATCCAGGGCAAAGCGCCCCCCAAACCCCCCAGTGCAAGGCTGGAAGGCAACTTAGATCCCTGTGGGAGCGGGCAAGCCCGCTCCCACAGGTTCCGCCCCCGCAATGGGGGTCAATTCATTTCTTGctctct > 1:720178/1‑139 (MQ=255) ttCACAGCATCCAGGGCAAAGCGCCCCCCAAACCCCCCAGTGCAAGGCTTGAAGGCAACTTAGATCCCTGTGGGAGCGGGCAAGCCCGCTCCCACAGGTTCCGCCCCCGCAATGGGGGTCAATTCATTTCTTGCTCTCTGCACTCGGGTc < 1:669241/150‑1 (MQ=255) ttCACAGCATCCAGGGCAAAGCGCCCCCCAAACCCCCCAGTGCAAGGCTGGAAGGCAACTTAGATCCCTGTGGGAGCGGGCAAGCCCGCTCCCACAGGTTCCGCCCCCGCAATGGGGGTCAATTCATTTCTTGCTCTCTGCACTCGGGTc > 1:1097795/1‑150 (MQ=255) acaGCATCCAGGGCAAAGCGCCCCCCAAACCCCCCAGTGCAAGGCTGGAAGGCAACTTAGATCCCTGTGGGAGCGGGCAAGCCCGCTCCCACAGGTTCCGCCCCCGCAATGGGGGTCAATTCATTTCTTGCTCTCTGCACTCgg < 2:627556/144‑1 (MQ=255) acaGCATCCAGGGCAAAGCGCCCCCCAAACCCCCCAGTGCAAGGCTGGAAGGCAACTTAGATCCCTGTGGGAGCGGGCAAGCCCGCTCCCACAGGTTCCGCCCCCGCAATGGGGGTCAATTCATTTCTTGCTCTCTGCACTCgg > 1:627556/1‑144 (MQ=255) aTCCAGGGCAAAGCGCCCCCCAAACCCCCCAGTGCAAGGCTGGAAGGCAACTTAGATCCCTGTGGGAGCGGGCAAGCCCGCTCCCACAGGTTCCGCCCCCGCAATGGGGGTCAATTCATTTCTTGCTCTCTGCACTCGGGTCGTAGAccc < 1:780842/150‑1 (MQ=255) aGGGCAAAGCGCCCCCCAAACCCCCCAGTGCAAGGCTGGAAGGCAACTTAGATCCCTGTGGGAGCGGGCAAGCCCGCTCCCACAGGTTCCGCCCCCGCAATGGGGGTCAATTCATTTCTTGCTCTCTGCACTCGGGTCGTAGACCCGCGt > 2:241958/1‑150 (MQ=255) ggCAAAGCGCCCCCCAAACCCCCCAGTGCAAGGCTGGAAGGCAACTTAGATCCCTGTGGGAGCGGGCAAGCCCGCTCCCACAGGTTCCGCCCCCGCAATGGGGGTCAATTCATTTCTTGct < 2:285292/121‑1 (MQ=255) ggCAAAGCGCCCCCCAAACCCCCCAGTGCAAGGCTGGAAGGCAACTTAGATCCCTGTGGGAGCGGGCAAGCCCGCTCCCACAGGTTCCGCCCCCGCAATGGGGGTCAATTCATTTCTTGct > 1:285292/1‑121 (MQ=255) cccAAACCCCCCAGTGCAAGGCTGGAAGGCAACTTAGATCCCTGTGGGAGCGGGCAAGCCCGCTCCCACAGGTTCCGCCCCCGCAATGGGGGTCAATTCATTTCTTGCTCTCTGCACTCGGGTCGTAGACCCGCGTCACATCGCCGCCCa < 2:822464/150‑1 (MQ=255) ccAAACCCCCCAGTGCAAGGCTGGAAGGCAACTTAGATCCCTGTGGGAGCGGGCAAGCCCGCTCCCACAGGTTCCGCCCCCGCAATGGGGGTCAATTCAttt < 1:428084/102‑1 (MQ=255) ccAAACCCCCCAGTGCAAGGCTGGAAGGCAACTTAGATCCCTGTGGGAGCGGGCAAGCCCGCTCCCACAGGTTCCGCCCCCGCAATGGGGGTCAATTCAttt > 2:428084/1‑102 (MQ=255) aaaCCCCCCAGTGCAAGGCTGGAAGGCAACTTAGATCCCTGTGGGAGCGGGCAAGCCCGCTCCCACAGGTTCCGCCCCCGCAATGGGGGTCAATTCATTTCTTGCTCTCTGCACTCGGGTCGTAGACCCGCGTCACATCGCCGCCCAGcc < 2:388016/150‑1 (MQ=255) aaaCCCCCCAGTGCAAGGCTGGAAGGCAACTTAGATCCCTGTGGGAGCGGGCAAGCCCGCTCCCACAGGTTCCGCCCCCGCAATGGGGGTCAATTCATTTCTTCCTCTCTGCACTCGGGTCGTAGACCCGCGTCACATCGCCGCCCAGcc > 1:1037136/1‑150 (MQ=255) ccAGTGCAAGGCTGGAAGGCAACTTAGATCCCTGTGGGAGCGGGCAAGCCCGCTCCCACAGGTTCCGCCCCCGCAATGGGGGTCAATTCATTTCTTGCTCTCTGCACTCGGGTCGTAGACCCGCGTCACATCGCCGCCCAGCCGGAAGCt > 1:366488/1‑150 (MQ=255) gAAGGCAACTTAGATCCCTGTGGGAGCGGGCAAGCCCGCTCCCACAGGTTCCGCCCCCGCAATGGGGGTCAATTCATTTCTTg < 1:359555/83‑1 (MQ=255) gAAGGCAACTTAGATCCCTGTGGGAGCGGGCAAGCCCGCTCCCACAGGTTCCGCCCCCGCAATGGGGGTCAATTCATTTCTTg > 2:359555/1‑83 (MQ=255) gCAACTTAGATCCCTGTGGGAGCGGGCAAGCCCGCTCCCACAGGTTCCGCCCCCGCAATGGGGGTCAATTCATTTCTTGCTCTCTGCACTCGGGTCGTAGACCCGCGTCACATCGCCGCCCAGCCGGAAGCTGTTGAACGGCTGCATGTc < 2:366488/150‑1 (MQ=255) cccTGTGGGAGCGGGCAAGCGCGCTCCCACAGGTTTCGCCCCTGCCATGGGGGGCAATGAAATTCTTGCTCTCTGCACTCGGGTCGTAGACCCGCGTCACATCGCCGCCCAGCCGGAAGCTGTTGAACGGCTGCATGTCGTGCTTGCGCt > 1:930158/1‑150 (MQ=255) ccTGTGGGAGCGGGCAAGCCCGCTCCCACAGGTTCCGCCCCCGCAATGGGGGTCAATTCATTTCTTGctctct > 2:33213/1‑73 (MQ=255) ccTGTGGGAGCGGGCAAGCCCGCTCCCACAGGTTCCGCCCCCGCAATGGGGGTCAATTCATTTCTTGctctct < 1:33213/73‑1 (MQ=255) gAGCGGGCTTGCCCGCTCCCACAGGTTCCGCCCCCGCAATGGGGGTCAATTCATTTCTTGCTCTCTGCACTCGGGTCGTAGACCCGCGTCACATCGCCGCCCAGCCGGAAGCTGTTGAACGGCTGCATGTCGTGCTTGCGCTCAAGCgtg > 2:424782/1‑150 (MQ=255) gAGCGGGCAAGCCCGCTCCCACAGGTTCCGCCCCCGCAATGGGGGTCAATTCATTTCTTGCTCTCTGCACTCGGGTCGTa < 1:1165142/80‑1 (MQ=255) gAGCGGGCAAGCCCGCTCCCACAGGTTCCGCCCCCGCAATGGGGGTCAATTCATTTCTTGCTCTCTGCACTCGGGTCGTa > 2:1165142/1‑80 (MQ=255) aGCGGGCTTGCCCGCTCCCACAGGTTCCGCCCCCGCAATGGGGGTCAATTCATTTCTTGCTCTCTGCACTCGGGTCGTAGACCCGCGTCACATCGCCGCCCAGCCGGAAGCTGTTGAACGGCTGCATGTCGTGCTTGCGCTCAAGCgtgt < 1:424782/150‑1 (MQ=255) aGCGGGCTTGCCCGCTACCACAGGTTCCGCCCCCGCAATGGGGGTCAATTCATTTCTTGCTCTCTGCACTCGGGTCGTAGACCCGCGTCACATCGCCGCCCAGCCGGAAGCTGTTGAACGGCTGCATGTCGTGCTTGCGCTCAAGCgtgt > 1:38862/1‑150 (MQ=255) aaGCCCGCTCCCACAGGTTCCGCCCCCGCAATGGGGGTCAATTCATTTCTTGCTCTCTGCACTCGGGTCGTAGACCCGCGTCACATCGCCGCCCAGCCGGAAGCTGTTGAACGGCTGCATGTCGTGCTTGCGCTCAAGCGTGTCGCCAAc > 2:716501/1‑150 (MQ=255) | GAAGATCGGCAAGAACAGGAACAGGAACACGTTGGACGAGAAGACCATCCCGGTTCTCCTAATTTGTTCACAGCATCCAGGGCAAAGCGCCCCCCAAACCCCCCAGTGCAAGGCTGGAAGGCAACTTAGATCCCTGTGGGAGCGGGCAAGCCCGCTCCCACAGGTTCCGCCCCCGCAATGGGGGTCAATTCATTTCTTGCTCTCTGCACTCGGGTCGTAGACCCGCGTCACATCGCCGCCCAGCCGGAAGCTGTTGAACGGCTGCATGTCGTGCTTGCGCTCAAGCGTGTCGCCAAC > NC_002947/1462884‑1463180 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |