Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 165,266 | A→G | 6.8% | I64T (ATC→ACC) | pntB ← | pyridine nucleotide transhydrogenase subunit beta |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 165,266 | 0 | A | G | 6.8% | 163.2 / 2.6 | 59 | I64T (ATC→ACC) | pntB | pyridine nucleotide transhydrogenase subunit beta |
Reads supporting (aligned to +/- strand): ref base A (26/29); new base G (2/2); total (28/31) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.17e-01 |
GCACGGCGGCGATGGCAATGAACACCGCGGCCAGGCCGATCATGCTGTGCATGAAAGCGACCAGTTCGGGCATTTTGGTCATTTCGACGCGCTTGGCCATGATCGAACCGGCGGTGCCGCCGACCAGCAGGCCGACGATGACATAGCCGATACCGGCTGTGGCAAGTTCAGCCCCAAGCTTATAAATGAGGCCAACCGTAGTGAGGATGGCGAGCCCCATGCCGATCATGCCGAACAGATTGCCGCGCCGCGAGGTGGTCGGGTGCGACAGGCCCTTGAGCGCCTGGATGAAG > NC_002947/165117‑165409 | gCATGGCGGCGGTGGTAATGAACACCGCGGCCAGGCCGATCATGCTGTGCATGAAAGCGACCAGTTCGGGCATTTTGGTCATTTCGACGCGCTTGGCCATGATCGAACCGGCGGTGCCGCCGACCAGCAGGCCGACGATGCCATAGCCGa < 2:787529/150‑1 (MQ=255) cggcggCGATGGCAATGAACACCGCGGCCAGGCCGATCATGCTGTGCATGAAAGCGACCAGTTCGGGCATTTTGGTCATTTCGACGCGCTTGGCCATGATCGAACCGGCGGTGCCGCCGACCAGCAGGCCGACGATGACATAGCCGATAc < 2:504875/150‑1 (MQ=255) gaacgaaaTGAACCCCGCGGCCAGGACGAGCAGGCTGTGCATGAACGCGACCACGTGGGGCATGTTGCTCATATCGGCGCGCTTGGCTAGACTGGAACCGGCGCCGGCGACGTCCAGCAGGACGGCGATGACATAGCCGATACCGGCtgc < 2:527842/144‑2 (MQ=255) aTGGCAATGAACACCGCGGCCAGGCCGATCATGCTGTGCATGAAAGCGACCAGTTCGGGCATTTTGGTCATTTCGACGCGCTTGGCCATGATCGAACCGGCGGTGCCGCCGACCAGCAGGCCGACGATGACATAGCCGATACCGGCtgtg > 2:523112/1‑150 (MQ=255) cAATGAACACCGCGGCCAGGCCGATCATGCTGTGCATGAAAGCGACCAGTTCGGGCATTTTGGTCATTTCGACGCGCTTGGCCATGATCGAACCGGCGGTGCCGCCGACAAGCAGGCCGACGATGACATAGCCGATACCGGCTGTGGCaa < 2:775538/150‑1 (MQ=255) aaTGAACACCGCGGCCAGGCCGATCATGCTGTGCATGAAAGCGACCAGTTCGGGCATTTTGGTCATTTCGACGCGCTTGGCCATGATCGAACCGGCGGTGCCGCCGACCAGCAGGCCGACGATGACATAGCCGATACCGGCTGTGGCAAg > 1:363116/1‑150 (MQ=255) ccGCGGCCAGGCCGATCATGCTGTGCATGAAAGCGACCAGTTCGGGCATTTTGGTCATTTCGACGCGCTTGGCCATGATCGAACCGGCGGTGCCGCCGACCAGCAGGCCGACGATGACATAGCCGATACCGGCTGTGGCAAGTTCAGccc > 1:676040/1‑150 (MQ=255) cgGCCAGGCCGATCATGCTGTGCATGAAAGCGACCAGTTCGGGCATTTTGGTCATTTCGACGCGCTTGGCCATGATCGAACCGGCGGTGCCGCCGACCAGCAGGCCGACGATGACATAGCCGATACCGGCTGTGGCAAGTTCAGCCCCaa < 2:227118/150‑1 (MQ=255) ggCCAGGCCGATCATGCTGTGCATGAAAGCGACCAGTTCGGGCATTTTGGTCATTTCGACGCGCTTGGCCATGATCGAACCGGCGGTGCCGCCGACCAGCAGGCCGACGATGACATAGCCGATACCGGCTGTGGCAAGTTCAGCCCCAAg < 2:338918/150‑1 (MQ=255) gCCAGGCCGATCATGCTGTGCATGAAAGCGACCAGTTCGGGCATTTTGGTCATTTCGACGCGCTTGGCCATGATCGAACCGGCGGTGCCGCCGACCAGCAGGCCGACGATGACATAGCCGATACCGGCTGTGGCAAGTCCAGCCCCAAGc < 1:101787/150‑1 (MQ=255) aGGCCGATCATGCTGTGCATGAAAGCGACCAGTTCGGGCATTTTGGTCATTTCGACGCGCTTGGCCATGATCGAACCGGCGGTGCCGCCGACCAGCAGGCCGACGATGACATAGCCGATACCGGCTGTGGCAAg > 2:192875/1‑134 (MQ=255) aGGCCGATCATGCTGTGCATGAAAGCGACCAGTTCGGGCATTTTGGTCATTTCGACGCGCTTGGCCATGATCGAACCGGCGGTGCCGCCGACCAGCAGGCCGACGATGACATAGCCGATACCGGCTGTGGCAAg < 1:192875/134‑1 (MQ=255) ggCCGATCATGCTGTGCATGAAAGCGACCAGTTCGGGCATTTTGGTCATTTCGACGCGCTTGGACATGATCGAACCGGCGGTGCCGCCGACCAGCAGTCCGACGATGACATAGCAGATACCGGCTGTGGCAAGTTCAGCCCCAAGCTtat < 2:228047/150‑1 (MQ=255) ccGATCATGCTGTGCATGAAAGCGACCAGTTCGGGCATTTTGGTCATTTCGCCGCGCTTGGCCATGATCGAACCGGCGGTGCCGCCGACCAGCAGGCCGACGNTCACATAGCCGATACCGGNTGTGGCAAGTTCAGCCCCAAGCTtatan < 1:123315/150‑2 (MQ=255) gATCATGCTGTGCATGAAAGCGACCAGTTCGGGCATTTTGGTCATTTCGACGCGCTTGGCCATGATCGAACCGGCGGTGCCACCGACCAGCAGGCCGACGATGACATAGCCGATACCGGCtgt > 1:277258/1‑123 (MQ=255) gATCATGCTGTGCATGAAAGCGACCAGTTCGGGCATTTTGGTCATTTCGACGCGCTTGGCCATGATCGAACCGGCGGTGCCACCGACCAGCAGGCCGACGATGACATAGCCGATACCGGCtgt < 2:277258/123‑1 (MQ=255) tCATGCTGTGCATGAAAGCGACCAGTTCGGGCATTTTGGTCATTTCGACGCGCTTGGCCATGATCGAACCGGCGGTGCCGCCGACCAGCAGGCCGACGATGACATAGCCGATACCGGCTGTGGCAAGTTCAGCCCCAAGCTTATAAATGa > 1:997322/1‑150 (MQ=255) tGCTGTGCATGAAAGCGACCAGTTCGGGCATTTTGGTCATTTCGACGCGCTTGGCCATGATCGAACCGGCGGTGCCGCCGACCAGCAGGCCGACGATGACATAGCCGATACCGGCTGTGGCAAGTTCAGCCCCAAGCTTATAAATGAGGc > 2:998360/1‑150 (MQ=255) tgtgCATGAAAGCGACCAGTTCGGGCATTTTGGTCATTTCGACGCGCTTGGCCATGATCGAACCGGCGGTGCCGCCGACCAGCAGGCCGACGATGACATAGCCGATACCGGCTGTGGCAAGTTCAGCCCCAAGCTTATAAATGAGGCCaa < 1:646890/150‑1 (MQ=255) tgtgCATGAAAGCGACCAGTTCGGGCATTTTGGTCATTTCGACGCGCTTGGCCATGATCGAACCGGCGGTGCCGCCGACCAGCAGGCCGACGATGACATAGCCGATACCGGCTGTGGCAAGTTCAGCCCCAAGCTTATAAATGAGGCCaa > 2:810394/1‑150 (MQ=255) aTGAAAGCGACCAGTTCGGGCATTTTGGTCATCTTTACGCGCTTGGCCATGATCGAACCGGCGGTGCCGCCGACCAGCAGGCCGACGATGACATAGCCGATACCGGCTGTGGCAAGTTCAGCCCCAAGCTTATAAATGAGGCCAACCGTa < 2:885993/150‑1 (MQ=255) tGAAAGCGACCAGTTCGGGCATTTTGGTCATTTCGACGCGCTTGGCCATGATCGAACCGGCGGTGCCGCCGACCAGCAGGCCGACGATGACATAGCCGATACCGGCTGTGGCAAGTTCAGCCCCAAGCTTATAAATGAGGc > 2:36789/1‑141 (MQ=255) tGAAAGCGACCAGTTCGGGCATTTTGGTCATTTCGACGCGCTTGGCCATGATCGAACCGGCGGTGCCGCCGACCAGCAGGCCGACGATGACATAGCCGATACCGGCTGTGGCAAGTTCAGCCCCAAGCTTATAAATGAGGc < 1:36789/141‑1 (MQ=255) aaGCGACCAGTTCGGGCATTTTGGTCATTTCGACGCGCTTGGCCATGATCGAACCGGCGGTGCCGCCGACCAGCAGGCCGACGATGACATAGCCGATACCGGCTGTGGCAAGTTCAGCCCCAAGCTTATAAATGAGGCCAACCGTAGTGa > 2:772918/1‑150 (MQ=255) aaGCGACCAGTTCGGGCATTTTGGTCATTTCGACGCGCTTGGCCATGATCGAACCGGCGGTGCCGCCGACCAGCAGGCCGACGATGACATAGCCGATACCGGCTGTGGCAAGTTCAGCCCCAAGCTTATAAATGAGGCCAACCGTAGTGa > 2:387723/1‑150 (MQ=255) cAGTTCGGGCATTTTGGTCATTTCGACGCGCTTGGCCATGATCGAACCGGCGGTGCCGCCGACCAGCAGGCCGACGATGACATAGCCGATACCGGCTGTGGCAAGTTCAGCCCCAAGCTTATAAATGAgg > 2:566772/1‑130 (MQ=255) cAGTTCGGGCATTTTGGTCATTTCGACGCGCTTGGCCATGATCGAACCGGCGGTGCCGCCGACCAGCAGGCCGACGATGACATAGCCGATACCGGCTGTGGCAAGTTCAGCCCCAAGCTTATAAATGAgg < 1:566772/130‑1 (MQ=255) aGTTCGGGCATTTTGGTCATTTCGACGCGCTTGGCCATGATCGAACCGGCGGTGCCGCCGACCAGCAGGCCGACGATGACATAGCCGATACCGGCTGTGGCAAGTTCAGCCCCAAGCTTATAAATGAGGCCAACCGTAGTGAGGATGGCg > 2:900088/1‑150 (MQ=255) cATTTTGGTCATTTCGACGCGCTTGGCCATGATCGAACCGGCGGTGCCGCCGACCAGCAGGCCGACGATGACATAGCCGATACCGGCTGTGGCAAGTTCAGCCCCAAGCTTATAAATGAGGCCAACCGTAGTGAGGATGGCGAGCCCCAt > 1:277554/1‑150 (MQ=255) tCATTTCGACGCGCTTGGCCATAATCGAACCGGCGGTGCCGCAGACCAGCAGGCCGACGATGACATAGCCGATACCGGCTGTGGCAAGTTCAGCCCCAAGCTTATAAATGAGGCCAACCGTAGTGAGGATGGCGAGCCCCATGcctgtca > 2:320722/1‑145 (MQ=255) ttCGACGCGCTTGGCAATGATCGAACCGGCGGTGCCGCCGACCAGCAGGCCGACGATGACATAGCCGATACCGGCTGTGGCAAGTTCAGCCCGAAGCTTAAAAATGAGGCCAGCCGTAAGGAGGTTGGCGGGCCCCAGGCCGATCATGcc < 2:676040/150‑1 (MQ=255) cgcgCTTGGCCATGATCGAACCGGCGGTGCCGCCGACCAGCAGGCCGACGATGACATAGCCGATACCGGCTGTGGCAAGTTCAGCCCCAAGCTTATAAATGAGGCCAACCGTAGTGAGGATGGCGAGCCCCATGCCGATCATGCCGAACa < 1:772918/150‑1 (MQ=255) gcgcTTGGCCATGATCGAACCGGCGGTGCCGCCGACCAGCAGGCCGACGATGACATAGCCGATACCGGCTGTGGCAAGTTCAGCCCCAAGGTTATAAATGAGGCCAACCGTAGTGAGGATGGCGAGCCCCATGCCGATCATGCCGAACAg > 2:252202/1‑150 (MQ=255) ccATGATCGAACCGGCGGTGCCGCCGACCAGCAGGCCGACGATGACATAGCCGATACCGGCTGTGGCAAGTTCAGCCCCAAGCTTATAAATGAGGCCAACCGTAGTGAGGATGGCGAGCCCCATGCCGATCATGCCGAACAGATTgccgc > 2:1025023/1‑150 (MQ=255) aTGATCGAACCGGCGGTGCCGCCGACCAGCAGGCCGACGATGACATAGCCGATACCGGCTGTGGCAAGTTCAGCCCCAAGCTTATAAATGAGGCCAACCGTAGTGAGGATGGCGAGCCCCATGCCGATCATGCCGAACAGATTgccgcgc < 1:998360/150‑1 (MQ=255) tGATCGAACCGGCGGTGCCGCCGACCAGCAGGCCGACGATGACATAGCCGATACCGGCTGTGGCAAGTTCAGCCCCAAGCTTATAAATGAGGCCAACCGTAGTGAGGATGGCGAGCCCCATGCCGATCATGCCGAACAGATTgccgcgcc < 2:314426/150‑1 (MQ=255) tCGAACCGGCGGTGCCGCCGACCAGCAGGCCGACGATGACATAGCCGATACCGGCTGTGGCAAGTTCAGCCCCAAGCTTATAAATGAGGCCAACCGTAGTGAGGATGGCGAGCCCCATGCCGATCATGCCGAACAGATTGccgcgccgcg > 2:280597/1‑150 (MQ=255) aCCGGCGGTGCCGCCGACCAGCAGGCCGACGATGACATAGCCGATACCGGCTGTGGCAAGTTCAGCCCCAAGCTTATAAATGAGGCCAACCGTAGTGAGGATGGCGAGCCCCATGCCGATCATGCCGAACAGATTGCCGCGCCGCGAggt < 1:523112/150‑1 (MQ=255) ccGGCGGTGCCGCCGACCAGCAGGCCGACGATGACATAGCCGATACCGGCTGTGGCAAGTTCAGCCCCAAGCTTATAAATGAGGCCAACCGTAGTGAGGATGGCGAGCCCCATGCCGATCATGCCGAACAGATTGCCGCGCCGCGAggtg < 1:447239/150‑1 (MQ=255) cggcggTGCCGCCGACCAGCAGGCCGACGATGACATAGCCGATACCGGCTGTGGCAAGTTCAGCCCCAAGCTta > 1:951867/1‑74 (MQ=255) cggcggTGCCGCCGACCAGCAGGCCGACGATGACATAGCCGATACCGGCTGTGGCAAGTTCAGCCCCAAGCTta < 2:951867/74‑1 (MQ=255) ctccgccgACCAGCAGGCCGACGATGACATAGCCGATACCGGCTGTGGCAAGTTCAGCCCCAAGCTTATAAATGAGGCCAACCGTAGTGAGGATGGCGAGCCCCATGTCGATCATGCCGAACAGATTGCCGCGCCGCGAGGTGGTCGGGt < 1:281702/148‑1 (MQ=255) cgccgACCAGCAGGCCGACGATGACATAGCCGATACCGGCTGTGGCAAGTTCAGCCCCAAGCTTATAAATGAGGCCAACCGTAGTGAGGATGGCGAGCCCCATGCCGATCATGCCGAAGCGATTGCCGCGCCGCGAGGTGGGCGGGTgag > 2:281702/1‑148 (MQ=255) cgACCAGCAGGCCGACGATGACATAGCCGATACCGGCTGTGGCAAGTTCAGCCCCAAGCTTATAAATGAGGCCAACCGTAGTGAGGATGGCGAGCCCCATGCCGATCATGCCGAACAGATTGCCGCGCCGCGAGGTGGTCGGGTGCGACa < 2:277554/150‑1 (MQ=255) ccAGCAGGCCGACGATGACATAGCCGATACCGGCTGTGGCAAGTTCAGCCCCAAGCTTATAAATGAGGCCAACCGTAGTGAGGATGGCGAGCCCCATGCCGATCATGCCGAACAGATTgccgcgcc < 2:925400/126‑1 (MQ=255) ccAGCAGGCCGACGATGACATAGCCGATACCGGCTGTGGCAAGTTCAGCCCCAAGCTTATAAATGAGGCCAACCGTAGTGAGGATGGCGAGCCCCATGCCGATCATGCCGAACAGATTgccgcgcc > 1:925400/1‑126 (MQ=255) ccGACGATGACATAGCCGATACCGGCTGTGGCAAGTTCAGCCCCAAGCTTATAAATGAGGCCAACCGTAGTGAGGATGGCGAGCCCCATGCCGATCATGCCGAACAGATTGCCGCGCCGCGAGGTGGTCGGGTGCGACAGGCCCTTGAgc < 2:997322/150‑1 (MQ=255) cgacgaTGACATAGCCGATACCGGCTGTGGCAAGTTCAGCCCCAAGATTATGAATGAGGCCAACCGTAGTGAGGATGGCGAGCCCCATGCCGATCATGCCGAACAGATTGCCGCGCCGCGAGGTGGTCGGGTGCGACAGGCCCTTGAgcg > 1:936780/1‑150 (MQ=255) gacgaTGCCACCGTCAATACCGGCTGTGGCAAGTTCAGCCCCAAGCTTATAAATGAGGCCAACCGTAGTGAGGATGGCGAGCCCCATGCCGATCATGCCGAACAGATTGCCGCGCCGCGAGGTGGTCGGGTGCGACAGGCCCTTGAgcgc < 2:936780/150‑1 (MQ=255) acgaTGACATTGCCGATACCGGCTGTGGCAAGTTCAGCCCCAAGCTTATAAATGAGGCCAACCGTAGTGAGGATGGCGAGCCCCATGCCGATCATGCCGAACAGATTGCCGCGCCGCGAGGTGGTCGGGTGCGACAGGc < 1:819600/139‑1 (MQ=255) acgaTGACATAGCCGATACCGGCTGTGGCAAGTTCAGCCCCAAGCTTATAAATGAGGCCAACCGTAGTGAGGATGGCGAGCCCCATGCCGATCATGCCGAACAGATTGCCGCGCCGCGAGGTGGTCGGGTGCGACAGGc > 2:819600/1‑139 (MQ=255) gaTGACATAGCCGATACCGGCTGTGGCAAGTTCAGCCCCAAGCTTATAAATGAGGCCACTCGTAGTGAGGATGGCGAGCCCCATGCCGATCATGCCGAACAGATTGCCGCGCCGCGAGGTGGTCGGGTGCGACAGGCCCTTGAGCGCCTg < 2:527066/150‑1 (MQ=255) ttgccacaGCCGGTATCGGCTATGGCAAGTTCAGCCCCAAGCTTATAAATGAGGCCAACCGTAGTGAGGATGGCGAGCCCCATGCCGATCATGCCGAACAGATTGCCGCGCCGCGAGGTGGTCGGGTGCGACAGGCCCTTGAGCGCCTgg > 2:878966/8‑150 (MQ=255) gccacaGCCGGTATCGGCTATGGCAAGTTCAGCCCCAAGCTTATAAATGAGGCCAACCGTAGTGAGGATGGCGAGCCCCATGCCGATCATGCCGAACAGATTGCCGCGCCGCGAGGTGGTCGGGTGCGACAGGCCCTTGAGCGCCTggct < 1:878966/145‑3 (MQ=255) gACATAGCCGATACCGGCTGTGGCAAGTTCAGCCCCAAGCTTATAAATGAGGCCAACCGTAGTGAGGATGGCGAGCCCCATGCCGATCATGCCGAACAGATTGCCGCGCCGCGAGGTGGTCGGGTGCGACAGGCACTTGAGCGACTGGAt > 1:9792/1‑150 (MQ=255) cacaGCCGGTATCGGCTGTGGCAAGTTCAGCCCCAAGCTTATAAATGAGGCCAACCGTAGTGAGGATGGCGAGCCCCATGCCGATCATGCCGAACAGATTGCCGCGCCGCGAGGTGGTCGGGTGCGACAGGCCCTTGAGCGCCt < 1:1111587/141‑1 (MQ=255) cacaGCCGGTATCGGCTGTGGCAAGTTCAGCCCCAAGCTTATAAATGAGGCCAACCGTAGTGAGGATGGCGAGCCCCATGCCGATCATGCCGAACAGATTGCCGCGCCGCGAGGTGGTCGGGTGCGACAGGCCCTTGAGCGCCt > 2:1111587/4‑144 (MQ=255) aTAGCCGATACCGGCTGTGGCAAGTTCAGCCCCAAGCTTATAAATGAGGCCAACCGTAGTGAGGATGGCGAGCCCCATGCCGATCATGCCGAACAGATTGCCGCGCCGCGAGGTGGTCGGGTGCGACAGGCCCTTGAGCGCCTGGATGaa > 1:1128380/1‑150 (MQ=255) ccGATACCGGCTGTGGCAAGTTCAGCCCCAAGCTTATAAATGAGGCCAACCGTAGTGAGGATGGCGAGCCCCATGCCGATCATGCCGAACAGATTGCCGCGCCGCGAGGTGGTCGGGTGCGACAGGCCCTTGAGCGCCTGGATGAAg > 1:874560/1‑147 (MQ=255) ccGATACCGGCTGTGGCAAGTTCAGCCCCAAGCTTATAAATGAGGCCAACCGTAGTGAGGATGGCGAGCCCCATGCCGATCATGCCGAACAGATTGCCGCGCCCCGAGGTGGTCGGGTGCGACAGGCCCTTGAGCGCCTGGATGAAg < 2:874560/147‑1 (MQ=255) | GCACGGCGGCGATGGCAATGAACACCGCGGCCAGGCCGATCATGCTGTGCATGAAAGCGACCAGTTCGGGCATTTTGGTCATTTCGACGCGCTTGGCCATGATCGAACCGGCGGTGCCGCCGACCAGCAGGCCGACGATGACATAGCCGATACCGGCTGTGGCAAGTTCAGCCCCAAGCTTATAAATGAGGCCAACCGTAGTGAGGATGGCGAGCCCCATGCCGATCATGCCGAACAGATTGCCGCGCCGCGAGGTGGTCGGGTGCGACAGGCCCTTGAGCGCCTGGATGAAG > NC_002947/165117‑165409 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |