| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,489,374 | C→T | 6.7% | intergenic (+166/‑37) | ybgI → / → cysD | metal‑binding hydrolase/oxidase/sulfate adenylyltransferase subunit 2 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,489,374 | 0 | C | T | 6.7% | 178.1 / 3.0 | 60 | intergenic (+166/‑37) | ybgI/cysD | metal‑binding hydrolase/oxidase/sulfate adenylyltransferase subunit 2 |
| Reads supporting (aligned to +/- strand): ref base C (24/32); new base T (2/2); total (26/34) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.25e-01 | |||||||||||
GCGGGCCTCATAGGAGCGGGTTCACCCGCGAAGAGGCCGGCCCTGCCAGCCCAAACCCCCAGTCATATCGTTAGACTTTTTCGATCTAGCCAGCCTCCTAAATAGAAGCAGCTGCTGTGATAAAGTGGCTCGCTCGAACACGGCCCGCAGGCCGTCCATAAGATCGTTTTTCGTGAGTAGCCATGGTCGACAAACTGACGCACTTGAAACAGCTGGAGGCGGAGAGCATCCACATCATCCGCGAGGTGGCCGCCGAGTTCGACAACCCGGTGATGCTGTACTCGATCG > NC_002947/1489229‑1489516 | gcgGGCCTCATAGGAGCGGGTTCACCCGCGAAGAGGCCGGCCCTGCCAGCCCAAACCCCCAGTCATATCGTTAGACTTTTTCGATCTAGCCAGCCTCCTAAATAGAAGCAGCTGCTGTGATAAAGTGGCTCGCTCGAACACGGCCCGCAg < 2:591488/150‑1 (MQ=255) ggCCTCATAGGAGCGGGTTCACCCGCGAAGAGGCCGGCCCTGCCAGCCCAAACCCCCAGTCATATCGTTAGACTTTTTCGATCTAGCCAGCCTCCTAAATAGAAGCAGCTGCTGTGATAAAGTGGCTCGCTCGAACACGGCCCGCAGGcc > 2:761365/1‑150 (MQ=255) cTCATAGGAGCGGGTTCACCCGCGAAGAGGCCGGCCCTGCCAGCCCAAACCCCCAGTCATATCGTTAGACTTTTTCGATCTAGCCAGCCTCCTAAATAGAAGCAGCTGCTGTGATAAAGTGGCTCGCTCGAACACGGCCCGCAGGCCGTc > 1:535975/1‑150 (MQ=255) aTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCCCTGCCAGCCCAAACCCCCAGTCATATCGTTAGACTTTTTCGATCTAGCCAGCCTCCTAAATAGAAGCAGCTGCTGTGATAAAGTGGCTCGCTCGAACACGGCCCGCAGGCCGTCCAt > 1:1000373/1‑150 (MQ=255) gAGCGGGTTCACCCGCGAAGAGGCCGGCCCTGCCAGCCCAAACCCCCAGTCATATCGTTAGACTTTTTCGATCTAGCCAGCCTCCTAAATAGAAGCAGCTGCTGTGATAAAGTGGCTCGCTCGAACACGGCCCGCAGGCCGTCCATAAGa < 1:1009256/150‑1 (MQ=255) gTTCACCCGCGAAGAGGCCGGCCCTGCCAGCCCAAACCCCCAGTCATATCGTTAGACTTTTTCGATCTAGCCAGCCTCCTAAATAGAAGCAGCTGCTGTGATAAAGTGGCTCGCTCGAACACGGCCCGCAg < 1:1073211/131‑1 (MQ=255) gTTCACCCGCGAAGAGGCCGGCCCTGCCAGCCCAAACCCCCAGTCATATCGTTAGACTTTTTCGATCTAGCCAGCCTCCTAAATAGAAGCAGCTGCTGTGATAAAGTGGCTCGCTCGAACACGGCCCGCAg > 2:1073211/1‑131 (MQ=255) cACCCGCGAAGAGGCCGGCCCTGCCAGCCCAAACCCCCAGTCATATCGTTAGACTTTTTCGATCTAGCCAGCCTCCTAAATAGAAGCAGCTGCTGTGATAAAGTGGCTCGCTCGAACACGGCCCGCAGGCCGTCCATAAGATCGTTTTTc < 2:535975/150‑1 (MQ=255) aaCCCGCGAAGAGGCCGGCCCTGCCAGCCCAAACCCCCAGTCATATCGTTAGACTTTTTCGATCTAGCCAGCCTCCTAAATAGAAGCAGCTGCTGTGATAAAGTGGCTCGCTCGAACACGGCCCGCAGGCCGTCCATAAGATCGTTTTTc < 1:1078988/149‑1 (MQ=255) aCCCGCGAAGAGGCCGGCCCTGCCAGCCCAAACCCCCAGTCATATTGTTAGACTTTTTCGATCTAGCCAGCCTCCTAAATAGAAGCAGCTGCTGTGATAAAGTGGCTCGCTCGAACACGGCCCGCAGGCCGTCCATAAGATCGTTTTTCg > 2:245972/1‑150 (MQ=255) ccGCGAAGAGGCCGGCCCTGCCAGCCCAAACCCCCAGTCATATCGTTAGACTTTTTCGATCTAGCCAGCCTCCTAAATAGAAGCAGCTGCTGTGATAAAGTGGCTCGCTCGAACACGGCCCGCAGGCCGTCCATAAGATCGTTTTTCGTg > 2:639146/1‑150 (MQ=255) cgcgAAGAGGCCGGCCCTGCCAGCCCAAACCCCCAGTCATATCGTTAGACTTTTTCGATCTAGCCAGCCTCCTAAATAGAAGCAGCTGCTGTGATAAAGTGGCTCGCTCGAACACGGCCCGCAGGCCGTCCATAAGATCGTTTTTCGTGa < 2:778808/150‑1 (MQ=255) cgcgAAGAGGCCGGCCCTGCCAGCCCAAACCCCCAGTCATATCGTTAGACTTTTTCGATCTAGCCAGCCTCCTAAATAGAAGCAGCTGCTGTGATAAAGTGGCTCGCTCGAACACGGCCCGCAGGCCGTCCATAAGATCGTTTTTCGTGa < 2:1146751/150‑1 (MQ=255) gcgAAGAGGCCGGCCCTGCCAGCCCAAACCCCCAGTCATATCGTTAGACTTTTTCGATCTAGCCAGCCTCCTAAATAGAAGCAGCTGCTGTGATAAAGTGGCTCGCTCGAACACGGCCCGCAGGCCGTCCATAAGATCGttt > 2:171511/1‑142 (MQ=255) gcgAAGAGGCCGGCCCTGCCAGCCCAAACCCCCAGTCATATCGTTAGACTTTTTCGATCTAGCCAGCCTCCTAAATAGAAGCAGCTGCTGTGATAAAGTGGCTCGCTCGAACACGGCCCGCAGGCCGTCCATAAGATCGttt < 1:171511/142‑1 (MQ=255) gagGCCGGCCCTGCCAGCCCAAACCCCCAGTCATATTGTTAGACTTTTTCGATCTAGCCAGCCTCCTAAATAGAAGCAGCTGCTGTGATAAAGTGGCTCGCTCGAACACGGCCCGCAGGCCGTCCATAAGATCGTTTTTCGTGAGTAGcc < 1:33997/150‑1 (MQ=255) cccTGCCAGCCCAAACCCCCAGTCATATCGTTAGACTTTTTCGATCTAGCCAGCCTCCTAAATAGAAGCAGCTGCTGTGATAAAGTGGCTCGCTCGAACACGGCCTGCGGGCCGtgttc > 1:227454/1‑115 (MQ=255) cccTGCCAGCCCAAACCCCCAGTCATATCGTTAGACTTTTTCGATCTAGCCAGCCTCCTAAATAGAAGCAGCTGCTGTGATAAAGTGGCTCGCTCGAACACGGCCTGCGGGCCGtgttc < 2:227454/119‑5 (MQ=255) ccTGCCAGCCCAAACCCCCAGTCATATCGTTAGACTTTTTCGATCTAGCCAGCCTCCTAAATAGAAGCAGCTGCTGTGATAAAGTGGCTCGCTCGAACACGGCCCGCAGGCCGTCGATAAGATCGTTTTTTGTGAGGAGCCATGGTCGAc > 1:1031279/1‑150 (MQ=255) gCCCAAACCCCCAGTCATATCGTTAGACTTTTTCGACCTCGCCAGCCTCCTAAATAGAAGCAGCTGCTGTGATAAAGTGGCTCGCTCGAACACGGCCCGCAGGCCGTCCATAAGATCGTTTTTCGTGAGTAGCCATGGTCGACAAACTGa < 1:854588/150‑1 (MQ=255) cccccAGTCATATCGTTAGACTTTTTCGATCTAGCCAGCCTCCTAAATAGAAGCAGCTGCTGTGATAAAGTGGCTCGCTCGAACACGGCCCGCAGGCCGTCCATAAGATCGTTTTTCGTGAGTAGCCATGGTCGACAAACTGACGCACtt < 2:1054117/150‑1 (MQ=255) tAGACTTTTTCGATCTAGCCAGCCTCCTAAATAGAAGCAGCTGCTGTGATAAAGTGGCTCGCTCGAACACGGCCCGCAGGCCGTCCATAAGATCGTTTTTCGTGAGTAGCCATGGTCGACAAACTGACGCACTTGAAACAGCTGGAGGCg < 1:959767/150‑1 (MQ=255) aCTTTTTCGATCTAGCCAGCCTCCTAAATAGAAGCAGCTGCTGTGATAAAGTGGCTCGCTCGAACACGGCCCGCAGGCCGTCCATAAGATCGTTTTTCGTGAGTAGCCATGGTCGACAAACTGACGCACTTGAAACAGCTGGAGGCGgag > 2:255873/1‑150 (MQ=255) gATCTAGCCAGCCTCCTAAATAGAAGCAGCTGCTGTGATAAAGTGGCTCGCTCGAACACGGCCCGCAGGCCGTCCATAAGATCGTTTTTCGTGAGTAGCCATGGTCGACAAACTGACGCACTTGAAACAGCTGGAGGCGGAGAGCATCca < 1:245972/150‑1 (MQ=255) aTCTAGCCAGCCTCCTAAATAGAAGCAGCTGCTGTGATAAAGTGGCTCGCTCGAACACGGCCCGCAGGCCGTCCATAAGATCGTTTTTCGTGAGTAGCCATGGTCGACAAACTGACGCACTTGAAACAGCTGGAGGCGGAGAGCATCcac > 2:784590/1‑150 (MQ=255) agccagccTCCTAAATAGAAGCAGCTGCTGTGATAAAGTGGCTCGCTCGAACACGGCCCGCAGGCCGTCCATAAGATCGTTTTTCGTGAGTAGCCATGGTCGACAAACTGACGCACTTGAAACAGCTGGAGGCGGAGAGCATCCAcatca > 2:172692/1‑150 (MQ=255) gccagccTCCTAAATAGAAGCAGCTGCTGTGATAAAGTGGCTCGCTCGAACACGGCCCGCAGGCCGTCCATAAGATCGTTTTTCGTGAGTAGCCATGGTCGACAAACTGACGCACTTGAAACAGCTGGAGGCGGAGAGCATCCAcatcat > 2:877774/1‑150 (MQ=255) agccTCCTAAATAGAAGCAGCTGCTGTGATAAAGTGGCTCGCTCGAACACGGCCCGCAGGCCGTCCATAAGATCGTTTTTCGTGAGTAGCCATGGTCGACAAACTGACGCACTTGAAACAGCTGGAGGCGgaga > 2:187501/1‑134 (MQ=255) agccTCCTAAATAGAAGCAGCTGCTGTGATAAAGTGGCTCGCTCGAACACGGCCCGCAGGCCGTCCATAAGATCGTTTTTCGTGAGTAGCCATGGTCGACAAACTGACGCACTTGAAACAGCTGGAGGCGgaga < 1:187501/134‑1 (MQ=255) cctcctAAATAGAAGCAGCTGCTGTGATAAAGTGGCTCGCTCGAACACGGCCCGCAGGCCGTCCATAAGATCGTTTTTCGTGAGTAGCCATGGTCGACAAACTGACGCACTTGAAACAGc < 1:87732/120‑1 (MQ=255) cctcctAAATAGAAGCAGCTGCTGTGATAAAGTGGCTCGCTCGAACACGGCCCGCAGGCCGTCCATAAGATCGTTTTTCGTGAGTAGCCATGGTCGACAAACTGACGCACTTGAAACAGc > 2:87732/1‑120 (MQ=255) cctcctAAATAGAAGCAGCTGCTGTGATAAAGTGGCTCGCTCGAACACGGCCCGCAGGCCGTCCATAAGATCGTTTTTCGTGAGTAGCCATGGTCGACAAACTGACGCACTTGAAACAGCTGGAGGCGGAGAGc > 2:214166/1‑134 (MQ=255) cctcctAAATAGAAGCAGCTGCTGTGATAAAGTGGCTCGCTCGAACACGGCCCGCAGGCCGTCCATAAGATCGTTTTTCGTGAGTAGCCATGGTCGACAAACTGACGCACTTGAAACAGCTGGAGGCGGAGAGc < 1:214166/134‑1 (MQ=255) ctcctAAATAGAAGCAGCTGCTGTGATAAAGTGGCTCGCTCGAACACGGCCCGCAGGCCGTCCATAAGATCGTTTTTCGTGAGTAGCCATGGTCGACAAACTGACGCACTTGAAACAGCTGGAGGCGGAGAGCATCCACATCATCCGCGa < 2:191325/150‑1 (MQ=255) ctAAATAGAAGCAGCTGCTGTGATAAAGTGGCTCGCTCGAACACGGCCCGCAGGCCGTCCATAAGATCGTTTTTCGTGAGTAGCCATGGTCGACAAACTGACGCACTCGAAACAGCTGGAGGCGGAGAGCATCCACATCATCCGCGAGGt < 2:850064/150‑1 (MQ=255) ctAAATAGAAGCAGCTGCTGTGATAAAGTGGCTCGCTCGAACACGGCCCGCAGGCCGGCCATAAGATCGTTTTTCGTGAGTAGCCATGGTCGACAAACTTACGCACTTGAAACAGCTGGAGGCGGAGAGCATCCACATCATCCGCGAGGt < 1:864437/150‑1 (MQ=255) ctAAATAGAAGCAGCTACTGTGATAAAGTGGCTCGCTCGAACACGGCCCGCAGGCCGTCCATAAGATCGTTTTTCGTGAGTAGCCATGGTCGACAAACTGACGCACTTGAAACAGCTGGAGGCGGAGAGCATCCACATCATCCGCGAGGt > 2:748953/1‑150 (MQ=255) tAAATAGAAGCAGCTGCTGTGATAAAGTGGCTCGCTCGAACACGGCCCGCAGGCCGTCCATAAGATCGTTTTTCGTGAGTAGCCATGGTCGACAAACTGACGCACTTGAAACAGCTGGAGGCGGAGAGCATCCACATCATCCGCGAGGTg < 1:784590/150‑1 (MQ=255) aaaTAGAAGCAGCTGCTGTGATAAAGTGGCTCGCTCGAACACGGCCCGCAGGCCGTCCATAAGATCGTTTTTCGTGAGTAGCCATGGTCGACAAACTGACGCACTTGAAACAGCTGGAGGCGGAGAGCATCCACATCATCCGCGAGGTgg > 2:571851/1‑150 (MQ=255) aaaTAGAAGCAGCTGCTGTGATAAAGTGGCTCGCTCGAACACGGCCCGCAGGCCGTCCATAAGATCGTTTTTCGTGAGTAGCCATGGTCGACAAACTGACGCACTTGAAACAGCTGGAGGCGGAGAGCATCCACATCATCCGCGAGGTgg > 2:572346/1‑150 (MQ=255) agcagcTGCTGTGATAAAGTGGCTCGCTCGAACACGGCCCGCAGGCCGTCCATAAGATCGTTTTTCGTGAGTAGCCATGGTCGACAAACTGACGCACTTGAAACAGCTGGAGGCGGAGAGCATCCACATCATCCGCGAGGTGGCCGCCGa < 2:1000373/150‑1 (MQ=255) gctgctGTGATAAAGTGGCTCGCTCGAACACGGCCCGCAGGCCGTCCATAAGATCGTTTTTCGTGAGTAGCCATGGTCGACAAACTGACGCACTTGAAACAGCTGGAGGCGGAGAGCATCCACATCATCCGCGAGGTGGCCGCCGAGTTc > 2:1149904/1‑150 (MQ=255) ctgTGATAAAGTGGCTCGCTCGAACACGGCCCGCAGGCCGTCCATAAGATCGTTTTTCGTGAGTAGCCATGGTCGACAAACTGACGCACTTGAAACAGCt > 1:667576/1‑100 (MQ=255) ctgTGATAAAGTGGCTCGCTCGAACACGGCCCGCAGGCCGTCCATAAGATCGTTTTTCGTGAGTAGCCATGGTCGACAAACTGACGCACTTGAAACAGCt < 2:667576/100‑1 (MQ=255) gtgATAAAGTGGCTCGCTCGAACACGGCCCGCAGGCCGTCCATAAGATCGTTTTTCGTGAGTAGCCATGGTCGACAAACTGACGCACTTGAAACAGCTGGAGGCGGAGAGCATCCACATCATCCGCGAGGTGGCCGCCGAGTTCGACAAc > 2:36287/1‑150 (MQ=255) aGTGGCTCGCTCGAACACGGCCCGCAGGCCGTCCATAAGATCGTTTTTCGTGAGTAGCCATGGTCGACAAACTGACGCACTTGAAACAGCTGGAGGCGGAGAGCATCCACATCATCCGCGAGGTGGCCGCCGAGTTCGACAACCCGGTGa < 1:255873/150‑1 (MQ=255) gTGGCTCGCTCGAACACGGCCCGCAGGCCGTCCATAAGATCGTTTTTCGTGAGTAGCCATGGTCGACAAACTGACGCACTTGAAACAGCTGGAGGCGGAGAGCATCCACATCATCCGCGAGGTGGCCGCCGAGTTCGACAACCCGGTGAt < 1:572346/150‑1 (MQ=255) gTGGCTCGCTCGAACACGGCCCGCAGGCCGTCCATAAGATCGTTTTTCGTGAGTAGCCATGGTCGACAAACTGACGCACTTGAAACAGCTGGAGGCGGAGAGCATCCACATCATCCGCGAGGTGGCCGCCGAGTTCGACAACCCGGTGAt > 1:1171671/1‑150 (MQ=255) gTGGCTCGCTCGAACACGGCCCGCAGGCCGTCCATAAGATCGTTTTTCGTGAGTAGCCATGGTCGACAAACTGACGCACTTGAAACAGCTGGAGGCGGAGAGCATCCACATCATCCGCGAGGTGGCCGCCGAGTTCGACAACCCGGTGAt < 1:571851/150‑1 (MQ=255) tGGCTCGCTCGAACACGGCCCGCAGGCCGTCCATAAGATCGTTTTTCGTGAGTAGCCATGGTCGACAAACTGACGCACTTGAAACAGCTGGAGGCGGAGAGCATCCACATCATCCGCGAGATCGCCGCCGAGTTCGACAACCCGGTGATg < 1:521829/150‑1 (MQ=255) ggCTCGGTCGAGCACGGCCCGCAGGCCGTCCATAAGATCGTTTTTCGTGAGTAGCCATGGTCGACAAACTGACGCACTTGAAACAGCTGGAGGCGGAGAGCATCCACATCATCCGCGAGGTGGCCGCCGAGTTCGACAACCCGGTGATGc < 2:1031279/150‑1 (MQ=255) gctcgctcGAACACGGCCCGCAGGCCGTCCATAAGATCGTTTTTCGTGAGTAGCCATGGTCGACAAACTGACGCACTTGAAACAGCTGGAGGCGGAGAGCATCCACATCATCCGCGAGGTGGCCGCCGAGTTCGAc > 2:1034679/1‑136 (MQ=255) gctcgctcGAACACGGCCCGCAGGCCGTCCATAAGATCGTTTTTCGTGAGTAGCCATGGTCGACAAACTGACGCACTTGAAACAGCTGGAGGCGGAGAGCATCCACATCATCCGCGAGGTGGCCGCCGAGTTCGAc < 1:1034679/136‑1 (MQ=255) gctcgAACACGGCCCGCAGGCCGTCCATAAGATCGTTTTTCGTGAGTAGCCATGGTCGACAAACTGACGCACTTGAAACAGCTGGAGGCGGAGAGCATCCACATCATCCGCGAGGTGGCCGCCGAGTTCGACAACCCGGTGATGCTGTAc < 1:639146/150‑1 (MQ=255) tcgAACACGGCCCGCAGGCCGTCCATAAGATCGTTTTTCGTGAGTAGCCATGGTCGACaaa > 1:879303/1‑61 (MQ=255) tcgAACACGGCCCGCAGGCCGTCCATAAGATCGTTTTTCGTGAGTAGCCATGGTCGACaaa < 2:879303/61‑1 (MQ=255) aaCACGGCCCGCAGGCCGTCCATAAGATCGTTTTTCGTGAGTAGCCATGGTCGACAAACTGACGCACTTGAAACAGCTGGAGGCGGAGAGCATCCACATCATCCGCGAGGTGGCCGCCGAGTTCGACAACCCGGTGATGCTGTACTCGAt < 2:718678/150‑1 (MQ=255) ggacGGCCTGCGGGCCGTCCATAAGACCGTTTTTCGTGAGTAGCCATGGTCGACAAACTGACGCACTTGAAACAGCTGGAGGCGGAGAGCATCCACATCATCCGCGAGGTGGCCGCCGAGTTCGACAACCCGGTGATGCTGTACTCGATc > 1:175474/3‑150 (MQ=255) gacGGCCTGCGGGCCGTCCATAAGACCGTTTTTCGTGAGTAGCCATGGTCGACAAACTGACGCACTTGAAACAGCTGGAGGCGGAGAGCATCCACATCATCCGCGAGGTGGCCGCCGAGTTCGACAACCCGGTGATGCTGTACTCGATCg < 2:175474/149‑1 (MQ=255) cacGGCCCGCAGGCCGTCCATAAGATCGTTTTTCGTGAGTAGCCATGGTCGACAAACTGACGCACTTGAAACAGCTGGAGGCGGAGAGCATCCACATCATCCGCGAGGTGGCCGCCGAGTTCGACAACCCGGTGATGCTGTACTCGATCg < 1:172692/150‑1 (MQ=255) | GCGGGCCTCATAGGAGCGGGTTCACCCGCGAAGAGGCCGGCCCTGCCAGCCCAAACCCCCAGTCATATCGTTAGACTTTTTCGATCTAGCCAGCCTCCTAAATAGAAGCAGCTGCTGTGATAAAGTGGCTCGCTCGAACACGGCCCGCAGGCCGTCCATAAGATCGTTTTTCGTGAGTAGCCATGGTCGACAAACTGACGCACTTGAAACAGCTGGAGGCGGAGAGCATCCACATCATCCGCGAGGTGGCCGCCGAGTTCGACAACCCGGTGATGCTGTACTCGATCG > NC_002947/1489229‑1489516 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |