| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,712,993 | T→A | 14.3% | intergenic (+34/‑106) | adk → / → tsaB | adenylate kinase/endopeptidase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,712,993 | 0 | T | A | 14.3% | 126.5 / 14.2 | 49 | intergenic (+34/‑106) | adk/tsaB | adenylate kinase/endopeptidase |
| Reads supporting (aligned to +/- strand): ref base T (19/23); new base A (3/4); total (22/27) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.83e-01 | |||||||||||
TGGATTTCTACCAGAAGCTGTCGGCTGCCAATGGCGGCAAGCCGAAGTACAGCCACATCGAAGGTGTCGGCTCGGTTGAAGCCATCACCGCCAAGGTCCTGGCAGCCCTGAGCTGATCCGGCGCCTGACGCACCTCGACAACGGCCCGCTTGCGGGCCGTTGTCGTTTGTAGGCCGCACAGCGCCCCCTCAGGACACAACGCCGCTGCTGCTCTATACTGCCGCTCTTTTTCATTCGCACCTGGATACCCGTTCGATGACCACCCTGCTGGCCCTGGATACCGCCACCGAAGCCTG > NC_002947/1712844‑1713139 | tggATTTCTACCAGAAGCTGTCGGCTGCCAATGGCGGCAAGCCGAAGTACAGCCACATCGAAGGTGTCGGCTCGGTTGAAGCCATCACCGCCAAGGTCCTGGCAGCCCTGAGCTGATCCGGCGCCTGACGCACCTCGACAACGGCCCGCt > 2:126548/1‑150 (MQ=255) gAAGCTGTCGGCTGCCAATGGCGGCAAGCCGAAGTACAGCCACATCGAAGGTGTCGGCTCGGTTGAAGCCATCACCGCCAAGGTCCTGGCAGCCCTGAGCTGATCCGGCGCCTGACGCACCTCGACAACGGCCCGCAAGCGGGCCGTTGt < 1:1158070/150‑1 (MQ=255) aGCTGTCGGCTGCCAATGGCGGCAAGCCGAAGTACAGCCACATCGAAGGTGTCGGCTCGGTTGAAGCCATCACCGCCAAGGTCCTGGCAGCCCTGAGCTGATCCGGCGCCTGACGCACCTCGACAACGGCCCGCAAGCGGGCCGTTGTCg < 1:853055/150‑1 (MQ=255) cTGTCGGCTGCCAATGGCGGCAAGCCGAAGTACAGCCACATGGAAGGTGTGGGCTGGGGTGAAGCCATCACCGCCAAGGTCCTGGCAGCCCTGAGCTGATCCGGCGCCTGACGCACCTCGACAACGGCCCGCTTGCGGGCCGTTGTCGtt > 1:453598/1‑150 (MQ=255) cTGTCGGCTGCCAATGGCGGCAAGCCGAAGTACAGCCACATCGAAGGTGTCGGCTCGGTTGAAGCCATCACCGCCAAGGTCCTGGCAGCCCTGAGCTGATCCGGCGCCTGACGCACCTCGACAACGGCCCGCTTGCGGGCCGTTGTCGtt < 1:888027/150‑1 (MQ=255) tGTCGGCTGCCAATGGCGGCAAGCCGAAGTACAGCCACATCGAAGGTGTCGGCTCGGTTGAAGCCATCACCGCCAAGGTCCTGGCAGCCCTGAGCTGATCCGGCGCCTGACGCACCTCGACAACGGCCCGCTTGCGGGCCGTTGTCGttt < 2:54097/150‑1 (MQ=255) ggCTGCCAATGGCGGCAAGCCGAAGTACAGCCACATCGAAGGTGTCGGCTCGGTTGAAGCCATCACCGCCAAGGTCCTGGCAGCCCTGAGCTGATCCGGCGCCTGACGCACCTCGACAACGGCCCGCTTGCGGGCCGTTGTCGTTTGTAg > 2:986283/1‑150 (MQ=255) ggCTGCCAATGGCGGCAAGCCGAAGTACAGCCACATCGAAGGTGTCGGCTCGGTTGAAGCCATCACCGCCAAGGTCCTGGCAGCCCTGAGCTGATCCGGCGCCTGACGCACCTCGACAACGGCCCGCTTGCGGGCCGTTGTCGTTTGTAg > 2:1169463/1‑150 (MQ=255) gCTGCCAATGGCGGCAAGCCGAAGTACAGCCACATCGAAGGTGTCGGCTCGGTTGAAGCCATCACCGCCAAGGTCCTGGCAGCCCTGAGCTGATCCGGCGCCTGACGCACCTCGACAACGGCCCGCTTGCGGGCCGTTGTCGTTTGTAgg < 2:826084/150‑1 (MQ=255) ccGAAGTACAGCCACATCGAAGGTGTCGGCTCGGTTGAAGCCATCACCGCCAAGGTCCTGGCAGCCCTGAGCTGATCCGGCGCCTGACGCACCTCGACAACGGCCCGCTTGCGGGCCGTTGTCGTTTGTAGGCCGCACAGCGCCCCCTCa < 1:868793/150‑1 (MQ=255) aaGTACAGCCACATCGAAGGTGTCGGCTCGGTTGAAGCCATCACCGCCAAGGTCCTGGCAGCCCTGAGCTGATCCGGCGCCTGACGCACCTCGACAACGGCCCGCTTGCGGGCCGTTGTCGTTTGTAGGCCGCACAGCGCCCCCTCAGGa < 1:986283/150‑1 (MQ=255) gTACAGCCACATCGAAGGTGTCGGCTCGGTTGAAGCCATCACCGCCAAGGTCCTGGCAGCCCTGAGCTGATCCGGCGCCTGACGCACCTCGACAACGGCCCGCTTGCGGGCCGTTGTCGTTTGTAGGCCGCACAGCGCCCCCTCAGGaca > 2:993942/1‑150 (MQ=255) cAGCCACATCGAAGGTGTCGGCTCGGTTGAAGCCATCACCGCCAAGGTCCTGGCAGCCCTGAGCTGATCCGGCGCCTGACGCACCTCGACAACGGCCCGCTTGCGGGCCGTTGTCGTTTGTAGGCCGCACAGCGCCCCCTCAGGACACaa < 1:1126954/150‑1 (MQ=255) ccACATCGAAGGTGTCGGCTCGGTTGAAGCCATCACCGCCAAGGTCCTGGCAGCCCTGAGCTGATCCGGCGCCTGACGCACCTCGACAACGGCCCGCTTGCGGGCCGTTGTCGtt < 2:597572/115‑1 (MQ=255) ccACATCGAAGGTGTCGGCTCGGTTGAAGCCATCACCGCCAAGGTCCTGGCAGCCCTGAGCTGATCCGGCGCCTGACGCACCTCGACAACGGCCCGCTTGCGGGCCGTTGTCGtt > 1:597572/1‑115 (MQ=255) ccACATCGAAGGTGTCGGCTCGGTTGAAGCCATCACCGCCAAGGTCCTGGCAGCCCTGAGCTGATCCGGCGCCTGACGCACCTCGACAACGGCCCGCTTGCGGGCCGTTGTCGTTTGTAGGCCGCACAGCGCCCCCTCAGGACACAAcgc > 2:704071/1‑150 (MQ=255) aGGTGTCGGCTCGGTTGAAGCCATCACCGCCAAGGTCCTGGCAGCCCTGAGCTGATCCGGCGCCTGACGCACCTCGACAACGGCCCGCTTGCGGGCCGTTGTCGTTTGTAGGCCGCACAGCGCCCCCTCAGGACACAACGCCgctgctgc < 1:228930/150‑1 (MQ=255) ggCTCGGTTGAAGCCATCACCGCCAAGGTCCTGGCAGCCCTGAGCTGATCCGGCGCCTGACGCACCTCGACAACGGCCCGCTTGCGGGCCGTTGTCGTTTGTAGGCCGCACAGCGCCCCCTCAGGACACAACGCCGCTGCTGCTCTATAc > 1:447273/1‑150 (MQ=255) cATCACCGCCAAGGTCCTGGCAGCCCTGAGCTGATCCGGCGCCTGACGCACCTCGACAACGGCCCGCTTGCGGGCCGTTGTCGTTTGTAGGCCGCACAGCGCCCCCTCAGGACACAACGCCGCTGCTGCTCTATACTGCCGCTCTTTTTc > 2:335985/1‑150 (MQ=255) aTCACCGCCAAGGTCCTGGCAGCCCTGAGCTGATCCGGCGCCTGACGCACCTCGACAACGGCCCGCTTGCGGGCCGTTGTCGGTTGTAGGCCGCACAGCGCCCCCTCATGACACAACGCCGCTGCTGCTCTATACTGCCGCTCTTTTTCa > 1:913333/1‑150 (MQ=255) ccGCCAAGGTCCTGGCAGCCCTGAGCTGATCCGGCGCCTGACGCACCTCGACAACGGCCCGCTTGCGGGCCGTTGTCGTTTGTAGGCCGCACAGCGCCCCCTCAGGACACAACGCCGCTGCTGCTCTATACTGCCGCTCTTTTTCATTCg < 1:372148/150‑1 (MQ=255) cGCCAAGGTCCTGGCAGCCCTGAGCTGATCCGGCGCCTGACGCACCTCGACAACGGCCCGCTTGCGGGCCGTTGTCGTTTGTAGGCCGCACAGCGCCCCCTCAGGACACAACGCCGCTGCTGCTCTATACTGCCGCTCTTTTTCATTCGc < 1:54826/150‑1 (MQ=255) aGGTCCTGGCAGCCCTGAGCTGATCCGGCGCCTGACGCACCTCGACAACGGCCCGCTTGCGGGCCGTTGTCGTTTGTAGGCCGCACAGCGCCCCCTCAGGACACAACGCCGCTGCTGCTCTATACTGCCGCTCTTTTTCATTCGCACCTg < 1:157316/150‑1 (MQ=255) ggTCCTGGCAGCCCTGAGCTGATCCGGCGCCTGACGCACCTCGACAACGGCCCGCTTGCGGGCCGTTGTCGTTTGTAGGCCGCACAgc > 2:824319/1‑88 (MQ=255) ggTCCTGGCAGCCCTGAGCTGATCCGGCGCCTGACGCACCTCGACAACGGCCCGCTTGCGGGCCGTTGTCGTTTGTAGGCCGCACAgc < 1:824319/88‑1 (MQ=255) tCCTGGCAGCCCTGAGCTGATCCGGCGCCTGACGCACCTCGACAACGGCCCGCTTGCGGGCCGTTGTCGTTTGTAGGCCGCACAGCGCCCCCTCAGGACACAACGCCGCTGCTGCTCTATACTGCCGCTCTTTTTCATTCGCACCTGGAt < 1:903708/150‑1 (MQ=255) cTGGCAGCCCTGAGCTGATCCGGCGCCTGACGCACCTCGACAACGGCCCGCTTGCGGGCCGTTGTCGTTTGTAGGCCGCACAGCGCCCCCTCAGGACACAACGCCGCTGCTGCTCTATACTGCCGCTCTTTTTCAtt > 2:388169/1‑137 (MQ=255) cTGGCAGCCCTGAGCTGATCCGGCGCCTGACGCACCTCGACAACGGCCCGCTTGCGGGCCGTTGTCGTTTGTAGGCCGCACAGCGCCCCCTCAGGACACAACGCCGCTGCTGCTCTATACTGCCGCTCTTTTTCAtt < 1:388169/137‑1 (MQ=255) cTGGCAGCCCTGAGCTGATCCGGCGCCTGACGCACCTCGACAACGGCCCGCTTGCGGGCCGTTGTCGTTTGTAGGCCGCACAGCGCCCCCTCAGGACACAACGCCGCTGCTGCTCTATACTGCCGCTCTTTTTCATTCGCACCTGGATAc < 1:704071/150‑1 (MQ=255) cTGGCAGCCCTGAGCTGATCCGGCGCCTGACGCACCTCGACAACGGCCCGCTTCCGGGCCGTTGTCGTTTGTAGGCCGCACAGCGCCCCCGCAGGACACAACGCCGCTGCTGCTCTATACTGTCGCTCTTTTTCATTCGCACCTGGATAc > 1:460710/1‑150 (MQ=255) aGCCCTGAGCTGATCCGGCGCCTGACGCACCTCGACAACGGCCCGCTTGCGGGCCGTTGTCGTTTGTAGGCCGCACAGCGCCCCCTCAGGa > 2:487171/1‑91 (MQ=255) aGCCCTGAGCTGATCCGGCGCCTGACGCACCTCGACAACGGCCCGCTTGCGGGCCGTTGTCGTTTGTAGGCCGCACAGCGCCCCCTCAGGa < 1:487171/91‑1 (MQ=255) cTGAGCTGATCCGGCGCCTGACGCACCTCGACAACGGCCCGCTTGCGGGCCGTTGTCGTTTGTAGGCCGCACAGCGCCCCCTCAGGACACAACGCCGCTGCTGCTCTATACTGCCGCTCTTTTTCATTCGCACCTGGATACCCGTTCGAt > 1:770279/1‑150 (MQ=255) aGCTGATCCGGCGCCTGACGCACCTCGACAACGGCCCGCTTGCGGGCCGTTGTCGTTTGTAGGCCGCACAGCGCCCCCTCAGGACACAACGCCGCTGCTGCTCTATACTGCCGCTCTTTTTCATTCGCACCTGGATACCCGTTCGATGac < 1:126548/150‑1 (MQ=255) gCTGATCCGGCGCCTGACGCACCTCGACAACGGCCCGCTTGCGGGCCGTTGTCGTTTGTAGGCCGCACAGCGCCCCCTCAGGACACAACGCCGCTGCTGCTCTATACTGCCGCTCTTTTTCATTCGCACCTGGATACCCGTTCGATGacc > 1:675170/1‑150 (MQ=255) tgctCCGGCGCGTGACCCATCTCCAACACGGCTCGCTTTCGTGCCGTTGTCGTTTGTAGGCCGCACAGCGCCCCCTCAGGACACAACGCCGCTGCTGCTCTATACTGCCGCTCTTTTTCATTCGCACCTGGATACCCGTTCGATGaccac < 1:1169463/147‑1 (MQ=255) gATCCGGCGCCTGACGCACCTCGACAACGGCCCGCTTGCGGGCCGTTGTCGTTTGTAGGCCGCACAGCGCCCCCTCAGGACACAACGCCGCTGCTGCTCTATACTGCCGCTCTTTTTCATTCGCACCTGGATACCCGTTCGATGaccacc < 1:335985/150‑1 (MQ=255) aTCCGGCGCCTGACGCACCTCGACAACGGCCCGCTTGCGGGCCGTTGTCGTTTGTAGGCCGCACAGCGCCCCCTCAGGACACAACGCCGCTGCTGCTCTATACTGCCGCTCTTTTTCATTCGCACCTGGATACCCGTTCGATGACCAccc > 1:444509/1‑150 (MQ=255) ccTGACGCACCTCGACAACGGCCCGCTTGCGGGCCGTTGTCGTTTGTAGGCCGCACAGCGCCCCCTCAGGACACAACGCCGCTGCTGCTCTATACTGCCGCTCTTTTTCATTCGCACCTGGTTACCCGTTCGATGACCACCCTGCTGGcc > 1:305693/1‑150 (MQ=255) cGCACCTCGACAACGGCCCGCTTGCGGGCCGTTGTCGTTTGTAGGCCGCACAGCGCCCCCTCAGGACACACCGCCTCTGCTGCTCTATACTGCCGCTCTTTTTCATTCGCACCTGGATACCCGTTCGATGACCACCCTGCTGGCCCTGGa < 1:384207/150‑1 (MQ=255) aaCGGCCCGCTTGCGGGCCGTCGTCGTTTGTAGGCCGCACAGCGCCCCCTCAGGACACAACGCCGCTGCTGCTCTATACTGCCGCTCTTTTTCATTCGCACCTGGATACCCGTTCGACCCCCCCCCTGCTGGCCCTGGATACCGCCACCg > 1:1016/1‑150 (MQ=255) aaCGGCCCGCAAGCGGGCCGTTGTCGTTTGTAGGCCGCACAGCGCCCCCTCAGGACACAACGCCGCTGCTGCTCTATACTGCCGCTCTTTTTCATTCGCACCTGGATACCCGTTCGATGACCACCctgctg < 1:643224/131‑1 (MQ=255) aaCGGCCCGCAAGCGGGCCGTTGTCGTTTGTAGGCCGCACAGCGCCCCCTCAGGACACAACGCCGCTGCTGCTCTATACTGCCGCTCTTTTTCATTCGCACCTGGATACCCGTTCGATGACCACCctgctg > 2:643224/1‑131 (MQ=255) aaCGGCCCGCAAGCGGGCCGTTGTCGTTTGTAGGCCGCACAGCGCCCCCTCAGGACACAACGCCGCTGCTGCTCTATACTGCCGCTCTTTTTCATTCGCACCTGGATACCCGTTCGATGACCACCCTGCTGGCCCTGGATACCGCCACCg > 1:107360/1‑150 (MQ=255) aCGGCCCGCAAGCGGGCCGTTGTCGTTTGTAGGCCGCACAGCGCCCCCTCAGGACACAACGCCGCTGCTGCTCTATACTGCCGCTCTTTTTCATTc < 1:1160847/96‑1 (MQ=255) aCGGCCCGCAAGCGGGCCGTTGTCGTTTGTAGGCCGCACAGCGCCCCCTCAGGACACAACGCCGCTGCTGCTCTATACTGCCGCTCTTTTTCATTc > 2:1160847/1‑96 (MQ=255) cGGCCCGGTTGCGGGCCGTTGTCGTTTGTAGGCCGCACAGCGCCCCCTCAGGACACAACGCCGCTGCTGCTCTATACTGCCGCTCTTTTTCATTCGCACCTGGATACCCGTTCGATGACCACCCTGCTGGCCCTGGATACCGCCACCGaa < 2:453598/150‑1 (MQ=255) ggCCCGCTTGCGGGCCGTTGTCGTTTGTAGGCCGCACAGCGCCCCCTCAGGACACAACGCCGCTGCTGCTCTATACTGCCGCTCTTTTTCATTCGCACCTGGATACCCGTTCGATGACCACCCTGCTGGCCCTGGATACCGCCACCGAAg < 2:770279/150‑1 (MQ=255) gCCCGCTTGCGGGCCGTTGTCGTTTGTAGGCCGCACAGCGCCCCCTCAGGACACAACGCCGCTGCTGCTCTATACTGCCGCTCTTTTTCATTCGCACCTGGATACCCGTTCGATGACCACCCTGCTGGCCCTGGATACCGCCACCGAAGc < 1:993942/150‑1 (MQ=255) cGCTTGCGGGCCGTTGTCGTTTGTAGGCCGCACAGCGCCCCCTCAGGACACAACGCCGCTGCTGCTCTATACTGCCGCTCTTTTTCATTCGCACCTGGATACCCGTTCGATGACCACCCTGCTGGCCCTGGATACCGCCACCGAAGCCTg > 2:138149/1‑150 (MQ=255) | TGGATTTCTACCAGAAGCTGTCGGCTGCCAATGGCGGCAAGCCGAAGTACAGCCACATCGAAGGTGTCGGCTCGGTTGAAGCCATCACCGCCAAGGTCCTGGCAGCCCTGAGCTGATCCGGCGCCTGACGCACCTCGACAACGGCCCGCTTGCGGGCCGTTGTCGTTTGTAGGCCGCACAGCGCCCCCTCAGGACACAACGCCGCTGCTGCTCTATACTGCCGCTCTTTTTCATTCGCACCTGGATACCCGTTCGATGACCACCCTGCTGGCCCTGGATACCGCCACCGAAGCCTG > NC_002947/1712844‑1713139 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |