| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,898,702 | T→C | 8.5% | intergenic (+66/‑105) | PP_t16 → / → PP_t17 | tRNA‑Asp/tRNA‑Val |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,898,702 | 0 | T | C | 8.5% | 155.6 / 2.4 | 56 | intergenic (+66/‑105) | PP_t16/PP_t17 | tRNA‑Asp/tRNA‑Val |
| Reads supporting (aligned to +/- strand): ref base T (26/25); new base C (2/3); total (28/28) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
ATAGCGCAGCGGTAGTTCAGTCGGTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATATTCCACTTCCAGGGCCCACTGAACACCCGGAAGTAACAAAGAAAGCGAC‑CTTAGAGTCGCTTTTTTTGTGCCTGATTTTTGGTGTTTGACCGAAGTGTGAAAAAACTTCGATAAGTGCTTGCCAGAGCGCCAAGTCGCCCGTAGAATGCGCGCCACACCGAGAGACATGGGTGATTAGCTCAGCCGGGAGAGCATCTGCCTTACAAGCAGA > NC_002947/1898555‑1898849 | ataGCGCAGCGGTAGTTCAGTCGGTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATATTCCACTTCCAGGGCCCACTGAACACCCGGAAGTAACAAAGAAAGCGAC‑CTTAGAGTCGCtttttt < 1:921595/150‑1 (MQ=35) gcAGCGGTAGTTCAGTCGGTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATATTCCACTTCCAGGGCCCACTGAACACCCGGAAGTAACAAAGAAAGCGAC‑TCTAAGGTCGCTTTCTTtgtta < 2:46717/150‑3 (MQ=11) gTTCAGTCGGTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATATTCCACTTCCAGGGCCCACTGAACACCCGGAAGTAACAAAGAAAGCGAC‑CTTAGAGTCGC‑TTTTTTGTGCCTGATTTTTg > 1:775111/1‑150 (MQ=255) ttCGGTCGGTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGTGTTCGAGTCCCGTCCGCTGCGCCATATTCCGAGGCCAGGGCCCACTGAACACCCGGAAGTAACAAAGAAAGCGAC‑CTTAGAGTCGCTTTTTTTGTGCCTGATTTTTg < 1:984492/150‑1 (MQ=14) tCAGTCGGTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCCTATTCCACTTCCAGGGCCCACTGAACACCCGGAAGTAACAAAGAAAGCGAC‑CTTAGAGTCGCTTTTTTTGTGCCTGATTTTTgg < 1:748419/150‑1 (MQ=255) ggTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATATTCCACTTCCAGGGCCCACTGAACACCCGGAAGTAACAAAGAAAGCGAC‑CTTAGAGTCGCTTTTTTTGTGCCTGATTTTTGGTGTTTg > 2:199704/1‑150 (MQ=255) gTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATATTCCACTTCCAGGGCCCACTGAACACCCGGAAGTAACAAAGAAAGCGAC‑CTTAGAGTCGCTTTTTTTGTGCCTGATTTTTGGTGTTTGa > 2:1009058/1‑150 (MQ=255) aaTACCGGTCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATATTCCACTTCCAGGGCCCACTGAACACCCGGAAGTAACAAAGAAAGCGAC‑CTTAGAGTCGCTTTCTTtgtt < 1:39298/126‑2 (MQ=255) aaTACCGGTCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATATTCCACTTCCAGGGCCCACTGAACACCCGGAAGTAACAAAGAAAGCGAC‑CTTAGAGTCGCTTTCTTtgtt > 2:39298/1‑125 (MQ=255) aaTACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATATTCCACTTCCAGGGCCCACTGAACACCCGGAAGTAACAAAGAAAGCGAC‑CTTAGAGTCGCTTTTTTTGTGCCTGATTTTTGGTGTTTGACCGaa < 2:909952/150‑1 (MQ=255) aaTACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATATTCCACTTCCAGGGCCCACTGAACACCCGGAAGTAACAAAGAAAGCGAC‑CTTAGAGTCGCTTTTTTTGTGCCTGATTTTTGGTGTTTGACCGaa > 1:597090/1‑150 (MQ=255) aCCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATATTCCACTTCCAGGGCCCACTGAACACCCGGAAGTAACAAAGAAAGCGAC‑CTTAGAGTCGCTTTTTTTGTGCCTGATTTTTGGTGTTTGACCGAAgtg < 1:1009058/150‑1 (MQ=255) ccGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCGCTTCCGCTGGGCCATATTCCACTTCCAGGGCCCACTGAACTCCCGGAAGTAACACAGTAACCGAC‑CTTAGAGTCGATTTTTTTGTGCCTGATTTTTGGTGTTTGACCGGAgtgt < 2:243240/150‑1 (MQ=17) gCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATATTCCACTTCCAGGGCCCACTGAACACCCGGAAGTAACAAAGAAAGCGAC‑CTTAGAGTCGCTTTTTTTGTGCCTGATTTTTGGTGTTTGACCGAAGTGTGaa > 2:180283/1‑150 (MQ=255) tCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATATTCCACTTCCAGGGCCCACTGAACACCCGGAAGTAACAAAGAAAGCGAC‑CTTAGAGTCGCTTTTTTTGTGCCTGATTTTTGGTGTTTGACCGAAGTGTGAAAAAAc > 2:14905/1‑150 (MQ=255) cGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATATTCCACTTCCAGGGCCCACTGAACACCCGGAAGTAACAAAGAAAGCGAC‑CTTAGAGTCGCTTTTTTTGTGCCTGATTTTTGGTGTTTGACCGAAGTGTGAAAAAACTTc < 1:483945/150‑1 (MQ=255) gCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATATTCCACTTCCAGGGCCCACTGAACACCCGGAAGTAACAAAGAAAGCGAC‑CTTAGAGTCGCTTTTTTTGTGCCTGATTTTTg < 1:820577/121‑1 (MQ=255) gCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATATTCCACTTCCAGGGCCCACTGAACACCCGGAAGTAACAAAGAAAGCGAC‑CTTAGAGTCGCTTTTTTTGTGCCTGATTTTTg > 2:820577/1‑121 (MQ=255) ggTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATATTCCACTTCCAGGGCCCACTGAACACCCGGAAGTAACAAAGAAAGCGAC‑CTTAGAGTCGCTTTTTTTGTGCCTGATTTTTGGTGTTTGACCGAAGTGTGAAAAAACTTCGATAAGt < 2:381447/150‑1 (MQ=255) tCGCGGGTTCGAGTCCCGTCCGCTGCGCCATATTCCACTTCCAGGGCCCACTGAACACCCGGAAGTAACAAAGAAAGCGAC‑CTTAGAGTCGCTTTTTTTGTGCCTGATTTTTGGTGTTTGACCGAAGTGTGAAAAAACTTCGATAAGTGc > 1:628229/1‑150 (MQ=255) gcgGGTTCGAGTCCCGTCCGCTGCGCCATATTCCACTTCCAGGGCCCACTGAACACCCGGAAGTAACAAAGAAAGCGAC‑CTTAGAGTCGCTTTTTTTGTGCCTGATTTTTGGTGTTTGACCGAAGTGTGAAAAAACTTCGATAAGTGCtt < 2:628229/150‑1 (MQ=255) cgGGTTCGAGTCCCGTCCGCTGCGCCATATTCCACTTCCAGGGCCCACTGAACACCCGGAAGTAACAAAGAAAGCGAC‑CTTAGAGTCGCTTTTTTTGTGCCTGATTTTTGGTGTTTGACCGAAGTGTGAAAAAACTTCGATAAGTGCTTg < 1:663001/150‑1 (MQ=255) gTTCGAGTCCCGTCCGCTGCGCCATATTCCACTTCCAGGGCCCACTGAACACCCGGAAGTAACAAAAAAAGCGACTCTAAG‑GTCGctttcttt < 2:259583/93‑1 (MQ=11) gTCCCGTCCGCTGCGCCATATTCCACTTCCAGGGCCCACTGAACACCCGGAAGTAACAAAGAAAGCGAC‑CTTAGAGTCGCTTTTTTTGTGCCTGATTTTTGGTGTTTGACCGAAGTGTGAAAAAACTTCGATAAGTGCTTGCCAGAgcgc < 1:411352/150‑1 (MQ=255) tCCCGTCCGCTGCGCCATATTCCACTTCCAGGGCCCACTGAACACCCGGAAGTAACAAAGAAAGCGAC‑CTTAGAGTCGCTTTTTTTGTGCCTGATTTTTGGTGTTTGACCGAAGTGTGAAAAAACTTCGATAAGTGCTTGCCAGAGCGcc > 2:610975/1‑150 (MQ=255) cccGTCCGCTGCGCCATATTCCACTTCCAGGGCCCACTGAACACCCGGAAGTAACAAAGAAAGCGAC‑CTTAGAGTCGC‑TTTTTTGTGCCTGATTTTTGGTGTTTGACCGAAGTGTGAAAAAACTTCGATAAGTGCTTGCCAGAGCGCCaa < 2:775111/150‑1 (MQ=255) cGTCCGCTGCGCCATATTCCACTTCCAGGGCCCACTGAACACCCGGAAGTAACAAAGAAAGCGAC‑CTTAGAGTCGCTTTTTTTGTGCCTGATTTTTGGTGTTTGACCGAAGTGTGAAAAAACTTCGATAAGTGCTTGCCAGAGCGCCAAg > 1:284799/1‑150 (MQ=255) cGTCCGCTGCGCCATATTCCACTTCCAGGGCCCACTGAACACCCGGAAGTAACAAAGAAAGCGAC‑CTTAGAGTCGCTTTTTTTGTGCCTGATTTTTGGTGTTTGACCGAAGTGTGAAAAAACTTCGATAAGTGCTTGCCAGAGCGCCAAg < 1:180283/150‑1 (MQ=255) ccGCTGCGCCATATTCCACTTCCAGGGCCCACTGAACACCCGGAAGTAACAAAGAAAGCGAC‑CTTAGAGTCGCTTTTTTTGTGCCTGATTTTTGGTGTTTGACCGAAGTGTGaaaa > 2:143999/1‑116 (MQ=255) ccGCTGCGCCATATTCCACTTCCAGGGCCCACTGAACACCCGGAAGTAACAAAGAAAGCGAC‑CTTAGAGTCGCTTTTTTTGTGCCTGATTTTTGGTGTTTGACCGAAGTGTGaaaa < 1:143999/116‑1 (MQ=255) cATATTCCACTTCCAGGGCCCACTGAACACCCGGAAGTAACAAAGAAAGCGAC‑CTTAGAGTCGCTTTTTTTGTGCCTGATTTTTg > 2:1006338/1‑85 (MQ=255) cATATTCCACTTCCAGGGCCCACTGAACACCCGGAAGTAACAAAGAAAGCGAC‑CTTAGAGTCGCTTTTTTTGTGCCTGATTTTTg < 1:1006338/85‑1 (MQ=255) cATATTCCACTTCCAGGGCCCACTGAACACCCGGAAGTAACAAAGAAAGCGAC‑CTTAGAGTCGCTTTTTTTGTGCCTGATTTTTGGTGTTTGACCGAAGTGTGAAAAAACTTCGATAAGTGCTTGCCAGAGCGCCAAGTCGCCCGTAGaa > 2:914761/1‑150 (MQ=255) tCCACTTCCAGGGCCCACTGAACACCCGGAAGTAACAAAGAAAGCGAC‑CTTAGAGTCGCTTTTTTTGTGCCTGATTTTTGGTGTTTGACCGAAGTGTGAAAAAACTTCGATAAGTGCTTGCCAGAGCGCCAAGTCGCCCGTAGAATgcgc > 1:186901/1‑150 (MQ=255) tCCACTTCCAGGGCCCACTGAACACCCGGAAGTAACAAAGAAAGCGAC‑CTTAGAGTCGCTTTTTTTGTGCCTGATTTTTGGTGTTTGACCGAAGTGTGAAAAAACTTCGATAAGTGCTTGCCAGAGCGCCAAGTCGCCCGTAGAATgcgc < 1:194039/150‑1 (MQ=255) tCCACTTCCAGGGCCCACTGAACACCCGGAAGTAACAAAGAAAGCGAC‑CTTAGAGTCGCTTTTTTTGTGCCTGATTTTTGGTGTTTGACCGAAGTGTGAAAAAACTTCGATAAGTGCTTGCCAGAGCGCCAAGTCGCCCGTAGAATgcgc < 1:199704/150‑1 (MQ=255) ccAGGGCCCACTGAACACCCGGAAGTAACAAAGACATTGAC‑CTTAGAGTCGCTTTTTTTGTGCCTGATTTTTGGTGTTTGACCGAAGTGTGAAAAAACTTCGATAAGTGCTTGCCAGAGCGCCAAGTCGCCCGTAGAATGCGCGCCacac > 1:698881/1‑150 (MQ=255) cAGGGCCCACTGAACACCCGGAAGTAACAAAGAAAGCGAC‑CTTAGAGTCGCTTTTTTTGTGCCTGATTTTTGGTGTTTGACCGAAGTGTGAAAAAACTTCGATAAGTGCTTGCCAGAGCGCCAAGTCGCCCGTAGAATGCGCGCCACAcc > 2:473138/1‑150 (MQ=255) cTGAACACCCGGAAGTAACAAAGAAAGCGAC‑CTTAGAGTCGCTTTTTTTGTGCCTGATTTTTGGTGTTTGACCGAAGTGTGAAAAAACTTCGATAAGTGCTTGCCAGAGCGCCAAGTCGTCCGTAGGATGCGCGCCACACCGAGAGACAt < 2:284799/150‑1 (MQ=255) tGAACACCCGGAAGTAACAAAGAAAGCGAC‑CTTAGAGTCGCTTTTTTTGTGc > 1:1195028/1‑52 (MQ=255) tGAACACCCGGAAGTAACAAAGAAAGCGAC‑CTTAGAGTCGCTTTTTTTGTGc < 2:1195028/52‑1 (MQ=255) gAACACCCGGAAGTAACAAAGAAAGCGAC‑CTTAGAGTCGCTTTTTTTGTGCCTGATTTTTGGTGTTTGACCGAAGTGTGAAAAAACTTCGATAAGTGCTTGCCAGAGCGCCAAGTCGCCCGTAGAATGCGCGCCACACCGAGAGACATgg < 1:610975/150‑1 (MQ=255) ccGGAAGTAACAAAGAAAGCGAC‑CTTAGAGTCGCTTTTTTTGTGCCTGATTTTTGGTGTTTGACCGAAgt < 2:291078/70‑1 (MQ=255) ccGGAAGTAACAAAGAAAGCGAC‑CTTAGAGTCGCTTTTTTTGTGCCTGATTTTTGGTGTTTGACCGAAgt > 1:291078/1‑70 (MQ=255) ccGGAAGTAACAAAGAAAGCGAC‑CTTAGAGTCGCTTTTTTTGTGCCTGATTTTTGGTGTTTGACCGAAGTGTGAAAAGACTTCGATAAGTGCTTGCCAGAGCGCCAAGTCGCCCGTAGAATGCGCGCCACACCGAGAGACATGGGTGAtt > 1:748606/1‑150 (MQ=255) ccGGAAGTAACAAAGAAAGCGAC‑CTTAGAGTCGCTTTTTTTGTGCCTGATTTTTGGTGTTTGACCGAAGTGTGAAAAAACTTCGATAAGTGCTTGCCAGAGCGCAAAGTCGCCCGTAGAATGCGCGCCACACCGAGAGACATGGGTGAtt > 1:400355/1‑150 (MQ=255) ggAAGTAACAAAGAAAGCGAC‑CTTAGAGTCGCTTTTTTTGTGCCTGATTTTTGGTGTTTGACCGAAGTGTGAAAAAACTTCGAt < 1:808968/84‑1 (MQ=255) ggAAGTAACAAAGAAAGCGAC‑CTTAGAGTCGCTTTTTTTGTGCCTGATTTTTGGTGTTTGACCGAAGTGTGAAAAAACTTCGAt > 2:808968/1‑84 (MQ=255) ggcaCAAAAAAAGCGAC‑TCTAAGGTCGCTTTCTTTGTGCCCGATTTTTGGTGCTTGACCGAAGTGTGAAAAAACTTCGATAAGTGCTTGCCAGAGCGCCAAGTCGCCCGTAGAATGCGCGCCACACCGAGAGACACGGGTGATTAGCTCa > 1:315563/4‑150 (MQ=37) aagaaagCGAC‑CTTAGAGTCGCTTTTTTTGTGCCTGATTTTTGGTGTTTGACCGAAGTGTGAAAAAACTTCGATAAGTGCTTGCCAGAGCGCCAAGTCGCCCGTa > 2:116524/1‑105 (MQ=255) aagaaagCGAC‑CTTAGAGTCGCTTTTTTTGTGCCTGATTTTTGGTGTTTGACCGAAGTGTGAAAAAACTTCGATAAGTGCTTGCCAGAGCGCCAAGTCGCCCGTa < 1:116524/105‑1 (MQ=255) aagaaagCGAC‑CTTAGAGTCGCTTTTTTTGTGCCTGATTTTTGGTGTTTGACCGAAGTGTGAAAAAACTTCGATAAGTGCTTGCCAGAGCGCCAAGTCGCCCGTAGAATGCGCGCCACACCGAGAGACATGGGTGATTAGCTCAGCCggg < 1:914761/150‑1 (MQ=255) aagaaagCGAC‑CTTAGAGTCGCTTTTTTTGTGCCTGATTTTTGGTGTTTGACCGAAGTGTGAAAAAACTTCGATAAGTGCTTGCCAGAGCGCCAAGTCGCCCGTAGAATGCGCGCCACACCGAGAGACATGGGTGATTAGCTCAGCCggg > 2:4802/1‑150 (MQ=255) agaaagCGAC‑CTTAGAGTCGCTTTTTTTGTGCCTGATTTTTGGTGTTTGACCGAAGTGTGAAAAAACTTCGATAAGTGCTTGCCAGAGCGCAAAGTCGCCCGTAGAATGCGCGCCACACCGAGAGACATGGGTGATTAGCTCAGCCGGga < 2:400355/150‑1 (MQ=255) aaaagCGAC‑TCTAAGGTCGCTTGCTTTGTGCCTGATTTTTGGTGTTTGACCGAAGTGTGAAAAAACTTCGATAAGTGCTTGCCAGAGCGCCAAGTCGCCCGTAGAATGCGCGCCACACCGAGAGACATGGGTGATTAGCTCAGCCGGgag < 2:315563/149‑1 (MQ=37) gAC‑CTTAGAGTCGCTTTTTTTGTGCCTGATTTTTGGTGTTTGACCGGAGTGTGAAAAAACTTCGATAAGTGCTTGCCAGAGCGCCAAGTCGCCCGTAGAATGCGCGCCACACCGAGAGACATGGGTGATTAGCTCAGCCGGGAGAGCATc > 1:371432/1‑150 (MQ=255) c‑cTTAGAGTCGCTTTTTTTGTGCCTGATTTTTGGTGTTTGACCGAAGTGTGAAAAAACTTCGATAAGTGCTTGCCAGAGCGCCAAGTCGCCCGTAGAATGCGCGCCACACCGAGAGACATGGGTGATTAGCTCAGCCGGGAGAGCATCTg > 1:471490/1‑150 (MQ=255) agTCGCTTTTTTTGTGCCTGATTTTTGGTGTTTGACCGAAGTGTGAAAAAACTTCGATAAGTGCTTGCCAGAGCGCCAAGTCGCCCGTAGAATGCGCGCCACACCGAGAGACATGGGTGATTAGCTCAGCCGGGAGAGCATCTGCCTTAc > 2:844264/1‑150 (MQ=255) ttttttGTGCCTGATTTTTGGTGTTTGACCGAAGTGTGAAAAAACTTCGATAAGTGCTTGCCAGAGCGCCAAGTCGCCCGTAGAATGCGCGCCACACCGAGAGACATGGGTGATTAGCTCAGCCGGGAGAGCATCTGCCTTACAAGCaga < 2:471490/150‑1 (MQ=255) ttttttGTGCCTGATTTTTGGTGTTTGACCGAAGTGTGAAAAAACTTCGATAAGTGCTTGCCAGAGCGCCAAGTCGCCCGTAGAATGCGCGCCACACCGAGAGACATGGGTGATTAGCTCAGCCGGGAGAGCATCTGCCTTACAAGCaga < 1:473138/150‑1 (MQ=255) ttttttGTGCCTGATTTTTGGTGTTTGACCGAAGTGTGAAAAAACTTCGATAAGTGCTTGCCAGAGCGCCAAGTCGCCCGTAGAATGCGCGCCACACCGAGAGACATGGGTGATTAGCTCAGCCGGGAGAGCATCTGCCTTACAAGCaga < 1:14905/150‑1 (MQ=255) | ATAGCGCAGCGGTAGTTCAGTCGGTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATATTCCACTTCCAGGGCCCACTGAACACCCGGAAGTAACAAAGAAAGCGAC‑CTTAGAGTCGCTTTTTTTGTGCCTGATTTTTGGTGTTTGACCGAAGTGTGAAAAAACTTCGATAAGTGCTTGCCAGAGCGCCAAGTCGCCCGTAGAATGCGCGCCACACCGAGAGACATGGGTGATTAGCTCAGCCGGGAGAGCATCTGCCTTACAAGCAGA > NC_002947/1898555‑1898849 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |