| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,971,099 | A→G | 13.8% | noncoding (85/86 nt) | PP_mr25 → | gyrA regulatory region |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,971,099 | 0 | A | G | 13.8% | 66.0 / 3.6 | 29 | noncoding (85/86 nt) | PP_mr25 | gyrA regulatory region |
| Reads supporting (aligned to +/- strand): ref base A (8/17); new base G (2/2); total (10/19) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.92e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.05e-01 | |||||||||||
TTTCCAAGACCGCCCATCACGGCGGCCTTCATTGCGCAGATCCATGGCACAACTCATTGATTTGTCGTAAGTCGTCGCACCCTTATGCGCTGCGGCGGCGAGCTTCGTTCGGCCCTTGATGGAGCTGCGAAGTTTCACCAGAAAAAGGAATCAGGCTTCTCATGGGCGAACTGGCCAAAGAAATCCTCCCGGTCAATATCGAAGACGAACTGAGACAGTCTTACCTCGACTACGCGATGAGCGTGATTGTCGGGCGAGCGCTGCCCGATGCGCGTGACGGCTTGAAGCCTGTG > NC_002947/1970954‑1971246 | tttCCAAGACCGCCCATCACGGCGGCCTTCATTGCGCAGATCCATGGCACAACTCATTGATTTGTCGTAAGTCGTCGCACCCTTATGCGCTGCGGCGGCGAGCTTCGTTCGGCCCTTGATGGAGCTGCGAAGTTTCACCAGAAAAAGGaa < 1:264027/150‑1 (MQ=255) ttCCAAGACCGCCCATCACGGCGGCCTTCAATGCGCAGATCAATAGAAAAAAAAAATGATTTGTAGTAAGTCGTAGCACCCTTATGCACTGCGGCGGCGAGCTACGTTCGGAAATTGATTGAGCTGCTAAATTTCAACAAAAAAAGGAAt < 2:352253/150‑1 (MQ=255) tCCAAGACCGCCCATCACGGCGGCCTTCATTGCGCAGATCCATGGCACAACTCATTGATTTGTCGTAAGTCGTCGCACCCTTATGCGCTGAGGCGGCGAGCTTCGTTCGGCCCTTGATGGAGCTGCGAAGTTTCACCAGAAAAAGGAATc < 1:213739/150‑1 (MQ=255) ccGCCCATCACGGCGGCCTTCATTGCGCAGATCCATGGCACAACTCATTGATTTGTCGTAAGTCGTCGCACCCTTATGCGCTGCGGCGGCGAGCTTCGTTCGGCCCTTGATGGAGCTGCGAAGTTTCACCAGAAAAAGGAATCAGGCTtc < 1:104170/150‑1 (MQ=255) cATCACGGCGGCCTTCATTGCGCAGATCCATGGCACAACTCATTGATTTGTCGTAAGTCGTCGCACCCTTATGCGCTGCGGCGGCGAGCTTCGTTCGGCCCTTGATGGAGCTGCGAAGTTTCACCAGAAAAGGGAATCAGGCTTCTCATg > 1:759811/1‑150 (MQ=255) aTCACGGCGGCCTTCATTGCGCAGATCCATGGCACAACTCATTGATTTGTCGTAAGTCGGCGCACCCTTATGCGCTGCGGCGGCGAGCTTCGTTCGGCCCTTGATGGAGCTGCGAAGTTTCACCAGAAAAAGGAATCAGGCTTCTCATgg < 2:319843/150‑1 (MQ=255) tCACGGCGGCATTCATTGCGCAGATCCATGGCACAACTCATTGATTTGTCGTCCGTCTGATAACAAGATAGCGCTGCAACGGATAGCTTCGTTCGGCCCTTGATGGCGCTGCGAAGTTTCACCAGAAAAAGGAATCAGGCTTCTCATggg < 1:390852/150‑1 (MQ=255) ggcCTTCATTGCGCAGATCCATGGCACAACTCATTGATTTGTCGTAAGTCGTCGCACCCTTATGCGCTGCGGCGGCGAGCTTCGTTCGGCCCTTGATGGAGCTGCGAAGTTTCACCAGAAAAAGGAATCAGGCTTCTCATGGGCGAACTg < 2:750509/150‑1 (MQ=255) gcCTTCATTGCGCAGATCCATGGCACAACTCATTGATTTGTCGTAAGTCGTCGCACCCTTATGCGCTGCGGCGGCGAGCTTCGTTCGGCCCTTGATGGAGCTGCGAAGTTTCACCAGAAAAAGGAATCAGGCTTCTCATGGGCGAACTgg > 2:948612/1‑150 (MQ=255) aTTGCCCAGATCCATGGCACAACTCATTGATTTGTCGTAAGTCGTCGCACCCTTATGCGCTGCGGCGGCGAGCTTCGTTCGGCCCTTGATGGAGCTGCGAAGTTTCACCAGAAAAAGGAATCAGGCTTCTCATGGGCGAACTGGCCAAAg < 1:356478/150‑1 (MQ=255) gcAGATCCATGGCACAACTCATTGATTTGTCGTAAGTCGTCGCACCCTTATGCGCTGCGGCGGCGAGCTTCGTTCGGCCCTTGATGGAGCTGCGAAGTTTCACCAGAAAAAGGAATCAGGCTTCTCATGGGCGAACTGGCCAAAGAAAtc > 1:531075/1‑150 (MQ=255) aTCCATGGCACAACTCATTGATTTGTCGTAAGTCGTCGCACCCTTATGCGCTGCGGCGGCGAGCTTCGTTCGGCCCTTGATGGAGCTGCGAAGTTTCACCAGAAAAAGGAATCAGGCTTCTCATGGGCGAACTGGCCAAAGAAAtgctcc < 2:715181/150‑1 (MQ=255) aTGGCACAACTCATTGATTTGTCGTAAGTCGTCGCACCCTTATGCGCTGCGGCGGCGAGCTTCGTTCGGCCCTTGATGGAGCTGCGAAGTTTCACCAGAAAAAGGAATCAGGCTTCTCATGGGCGAACTGGCCAAAGAAATCCTCCCGGt > 2:1083511/1‑150 (MQ=255) tGGCACAACTCATTGATTTGTCGTAAGTCGTCGCACCCTTATGCGCTGCGGCGGCGAGCTTCGTTCGGCCCTTGATGGAGCTGCGAAGTTTTACCAGAAAAGGGAATCAGGCTTCTCATGGGCGAACTGGCCAAAGAAATCCTCCCGGTc > 2:194856/1‑150 (MQ=255) tGGCACAACTCATTGATTTGTCGTAAGTCGTCGCACCCTTATGCGCTGCGGCGGCGAGCTTCGTTCGGCCCTTGATGGAGCTGCGAAGTTTCACCAGAAAAAGGAATCAGGCTTCTCATg > 1:46360/1‑120 (MQ=255) tGGCACAACTCATTGATTTGTCGTAAGTCGTCGCACCCTTATGCGCTGCGGCGGCGAGCTTCGTTCGGCCCTTGATGGAGCTGCGAAGTTTCACCAGAAAAAGGAATCAGGCTTCTCATg < 2:46360/120‑1 (MQ=255) acaACTCATTGATTTGTCGTAAGTCGTCGCACCCTTATGCGCTGCGGCGGCGAGCTTCGTTCGGCCCTTGATGGAGCTGCGAAGTTTCACCAGAAAAAGGAATCAGGCTTCTCATGGGCGAACTGGCCAAAGAAATCCTCCCGGTCAata < 1:166243/150‑1 (MQ=255) aTTTGTCGTAAGTCGTCGCACCCTTATGCGCTGCGGCGGCGAGCTTCGTTCGGCCCTTGATGGAGCTGCGAAGTTTCACCAGAAAAAGGAATCAGGCTTCTCATGGGCGAACTGGCCAAAGAAATCCTCCCGGTCAATATCGAAGACGaa < 2:292111/150‑1 (MQ=255) tAAGTCGTCGCACCCTTATGCGCTGCGGCGGCGAGCTTCGTTCGGCCCTTGATGGAGCTGCGAAGTTTCACCAGAAAAAGGAATCAGGCtt > 1:11141/1‑91 (MQ=255) tAAGTCGTCGCACCCTTATGCGCTGCGGCGGCGAGCTTCGTTCGGCCCTTGATGGAGCTGCGAAGTTTCACCAGAAAAAGGAATCAGGCtt < 2:11141/91‑1 (MQ=255) cACCCTTATGCGCTGCGGCGGCGAGCTTCGTTCGGCCCTTGATGGAGCTGCGAAGTTTCACCAGAAAAAGGAATCAGGCTTCTCATGGGCGAACTGGCCAAAGAAATCCTCCCGGTCAATATCGAAGACGAACTGAGACAGTCTTACCTc < 1:1083511/150‑1 (MQ=255) cgttcgGCCCTTGATGGAGCTGCGAAGTTTCACCAGAAAAGGGAATCAGGCTTCTCATGGGCGAACTGGCCAAAGAAATCCTCCCGGTCAATATCGAAGACGAACTGAGACAGTCTTACCTCGACTACGCGATGAGCGTGATTGTCGGGc < 2:759811/150‑1 (MQ=255) cccTTGATGGAGCTGCGAAGTTTCACCAGAAAAAGGAATCAGGCTTCTCATGGGCGAACTGGCCAAAGAAATCCTCCCGGTCAATATCGAAGACGAACTGAGACAGTCTTACCTc > 2:414425/1‑115 (MQ=255) cccTTGATGGAGCTGCGAAGTTTCACCAGAAAAAGGAATCAGGCTTCTCATGGGCGAACTGGCCAAAGAAATCCTCCCGGTCAATATCGAAGACGAACTGAGACAGTCTTACCTc < 1:414425/115‑1 (MQ=255) tGGAGCTGCGAAGTTTCACCAGAAAAAGGAATCAGGCTTCTCATGGGCGAACTGGCCAAAGAAATCCTCCCGGTCAATATCGAAGACGAACTGAGACAGTCTTACCTCGACTACGCGATGAGCGTGATTGTCGGGCGAGCGCTGCCCGAt < 1:948612/150‑1 (MQ=255) tGCGAAGTTTCACCAGAAAAAGGAATCAGGCTTCTCATGGGCGAACTGGCCAAAGAAATCCTCCCGGTCAATATCGAAGACGAACTGAGACAGTCTTACCTCGACTACGCGATGAGCGTGATTGTCGGGCGAGCGCTGCCCGATGCGCGt < 2:531075/150‑1 (MQ=255) tttCACCAGAAAAAGGAATCAGGCTTCTCATGGGCGAACTGGCCAAAGAAATCCTCCCGGTCAATATCGAAGACGAACTGAGACAGTCTTACCTCGACTACGCGATGAGCGTGATTGTCGGGCGAGCGCTGCCCGATGCGCGTGACGGCt > 2:1045862/1‑150 (MQ=255) tttCACCAGAAAAAGGAATCAGGCTTCTCATGGGCGAACTGGCCAAAGAAATCCTCCCGGTCAATATCGAAGACGAACTGAGACAGTCTTACCTCGACTACGCGATGAGCGTGATTGTCGGGCGAGCGCTGCCCGATGCGCGTGACGGCt > 1:1127147/1‑150 (MQ=255) ttCACCAGAAAAGGGAATCAGGCTTCTCATGGGCGAACTGGCCAAAGAAATCCTCCCGGTCAATATCGAAGACGAACTGAGACAGTCTTACCTCGACTACGCGATGAGCGTGATTGTCGGGCGAGCGCTGCCCGATGCGCGTGACGGCtt < 1:194856/150‑1 (MQ=255) aaaaaGGAATCAGGCTTCTCATGGGCGAACTGGCCAAAGAAATCCTCCCGGTCAATATCGAAGACGAACTGAGACAGTCTTACCTCGACTACGCGATGAGCGTGATTGTCGGGCGAGCGCTGCCCGATGCGCGt > 1:65502/1‑134 (MQ=255) aaaaaGGAATCAGGCTTCTCATGGGCGAACTGGCCAAAGAAATCCTCCCGGTCAATATCGAAGACGAACTGAGACAGTCTTACCTCGACTACGCGATGAGCGTGATTGTCGGGCGAGCGCTGCCCGATGCGCGt < 2:65502/134‑1 (MQ=255) aaaGGAATCAGGCTTCTCATGGGCGAACTGGCCAAAGAAATCCTCCCGGTCAATATCGAAGACGAACTGAGACAGTCTTACCTCGACTACGCGATGAGCGTGATTGTCGGGCGAGCGCTGCCCGATGCGCGTGACGACTTGAAGCCtgtg > 1:848989/1‑150 (MQ=255) | TTTCCAAGACCGCCCATCACGGCGGCCTTCATTGCGCAGATCCATGGCACAACTCATTGATTTGTCGTAAGTCGTCGCACCCTTATGCGCTGCGGCGGCGAGCTTCGTTCGGCCCTTGATGGAGCTGCGAAGTTTCACCAGAAAAAGGAATCAGGCTTCTCATGGGCGAACTGGCCAAAGAAATCCTCCCGGTCAATATCGAAGACGAACTGAGACAGTCTTACCTCGACTACGCGATGAGCGTGATTGTCGGGCGAGCGCTGCCCGATGCGCGTGACGGCTTGAAGCCTGTG > NC_002947/1970954‑1971246 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |