Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,973,914 | A→T | 9.4% | intergenic (+28/‑120) | gyrA → / → serC | DNA gyrase subunit A/3‑phosphoserine/phosphohydroxythreonine aminotransferase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,973,914 | 0 | A | T | 9.4% | 157.1 / 7.4 | 53 | intergenic (+28/‑120) | gyrA/serC | DNA gyrase subunit A/3‑phosphoserine/phosphohydroxythreonine aminotransferase |
Reads supporting (aligned to +/- strand): ref base A (23/25); new base T (3/2); total (26/27) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.69e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.39e-01 |
AGCCGTCCGAGGACGAACTCGATGAAGTGATCGAGACGGACGAGGAGGGTGTCGAGGCTGTAGCGCCAGACAATGAAAATGAAGAAGCTGCAGGTGCCGACGAGGCCCCGCAAGAGTAAGTAAGCGTAAACCCGAGCGGGGCGACCAAGGTCGCCCCGTTTGACTGTGTAGGAGCGGGCTTGCCCGCGATGCAGGCGCCACCGATCCTGCATGGAATGTGGCCACCGAATTACGATTTTGTTCTATTTGGCAGAGCGAGAGTGGATGTGAGCAAACGAGCCTTTAACTTCTGCGC > NC_002947/1973768‑1974062 | aGCCGTCCGAGGACGAACTCGATGAAGTGATCGAGACGGACGAGGAGGGTGTCGAGGCTGTAGCGCCAGACAATGAAAATGAAGAAGCTGCAGGTGCCGACGAGGCCCCGCAAGAGTAAGTAAGCGTAAACCCGAGCGGGGCGACCAAgg < 1:1194589/150‑1 (MQ=255) gCCGTCCGAGGACGAACTCGATGAAGTGATCGAGACGGACGAGGAGGGTGTCGAGGCTGTAGCGCCAGACAATGAAAATGAAGAAGCTGCAGGTGCCGACGAGGCCCCGCAAGAGTAAGTAAGCGTAAACCCGAGCGGGGCGACCAAGGt < 1:1206817/150‑1 (MQ=255) aGGACGAACTCGATGAAGTGATCGAGACGGACGAGGAGGGTGTCGAGGCTGTAGCGCCAGACAATGAAAATGAAGAAGCTGCAGGTGCCGACGAGGCCCCGCAAGAGTAAGTAAGCGTAAACCCGAGCGGGGCGACCAAGGTCGCCCCGt < 2:986664/150‑1 (MQ=255) aCTCGATGAAGTGATCGAGACGGACGAGGAGGGTGTCGAGGCTGTAGCGCCAGACAATGAAAATGAAGAAGCTGCAGGTGCCGACGAGGCCCCGCAAGAGTAAGTAAGCGTAAACCCGAGCGGGGCGACCAAGGTCGCCCCGTTTGACtg > 1:67487/1‑150 (MQ=255) cGATGAAGTGATCGAGACGGACGAGGAGGGTGTCGAGGCTGTAGCGCCAGACAATGAAAATGAAGAAGCTGCAGGTGCCGACGAGGCCCCGCAAGAGTAAGTAAGCGTAAACCCGAGCGGGGCGACCAAGGTCGCCCCGTTTGACTgtgt > 1:744218/1‑150 (MQ=255) gATGAAGTGATCGAGACGGACGAGGAGGGTGTCGAGGCTGTAGCGCCAGACAATGAAAATGAAGAAGCTGCAGGTGCCGACGAGGCCCCGCAAGAGTAAGTAAGCGTAAACCCGAGCGGGGCGACCAAGGTCGCCCCGTTTGACTGTGTa > 1:746684/1‑150 (MQ=255) aTGAAGTGATCTAAACTGACGAAGAGGGTGTCGAGGCTGTAGCGCCAGACAATGAAAATGAAGAAGCTGCAGGTGCCGACGAGGCCCCGCAAGAGTAAGTAAGCGTAAACCCGAGCGGGGCGACCAAGGTCGCCCCGTTTGACTGTGTAg < 2:67487/150‑1 (MQ=255) tGAAGTGATCGAGACGGACGAGGAGGGTGTCGAGGCTGTAGCGCCAGACAATGAAAATGAAGAAGCTGCAGGTGCCGACGAGGCCCCGCAAGAGTAAGTAAGCGTAAACCCGAGCGGGGCGACCAAGGTCGCCCCGTTTGACTGTGTAgg > 2:243123/1‑150 (MQ=255) gTGATCGAGACGGACGAGGAGGGTGTCGAGGCTGTAGCGCCAGACAATGAAAATGAAGAAGCTGCAGGTGCCGACGAGGCCCCGCAAGAGTAAGTAAGCGTAAACCCGAGCGGGGCGACCAAGGTCGCCCCGTTTGACTGTGTAGGAGCg < 2:746684/150‑1 (MQ=255) tGATCGAGACGGACGAGGAGGGTGTCGAGGCTGTAGCGCCAGACAATGAAAATGAAGAAGCTGCAGGTGCCGACGAGGCCCCGCAAGAGTAAGTAAGCGTAAACCCGAGCGGGGCGACCAAGGTCGCCCCGTTTGACTGTGTAGGAGCgg < 2:182738/150‑1 (MQ=255) tCGAGACGGACGAGGAGGGTGTCGAGGCTGTAGCGCCAGACAATGAAAATGAAGAAGCTGCAGGTGCCGACGAGGCCCCGCAAGAGTAAGTAAGCGTAAACCCGAGCGGGGCGACCAAGGTCGCCCCGTTTGACTGTGTAGGAGCGGGCt > 1:79380/1‑150 (MQ=255) agaCGGACGAGGAGGGTGTCGAGGCTGTAGCGCCAGACAATGAAAATGAAGAAGCTGCAGGTGCCGACGAGGCCCCGCAAGAGTAAGTAAGCGTAAACCCGAGCGGGGCGATCAAGGTCGCCCCGTTTGACTGTGTAGGAGCGGGCTTGc < 2:697804/150‑1 (MQ=255) gaggGTGTCGAGGCTGTAGCGCCAGACAATGAAAATGAAGAAGCTGCAGGTGCCGACGAGGCCCCGCAAGAGTAAGTAAGCGTAAACCCGAGCGGGGCGACCAAGGTCGCCCCGTTTGACTGTGTAGGAGCGGGCTTGCCCGCGATGCAg < 1:128501/150‑1 (MQ=255) gggTGTCGAGGCTGTAGCGCCAGACAATGAAAATGAAGAAGCTGCAGGTGCCGACGAGGCCCCGCAAGAGTAAGTAAGCGTAAACCCGAGCGGGGCGACCAAGGTCGCCCCGTTTGACTGTGTAGGAGCGGGCTTGCCCGCGATGCAGgc < 2:218710/150‑1 (MQ=255) gtgtCGAGGGTGTAGCGGCCGTCAGACATAACGAAGAAGCTGCGGGTGCCGACGAGGCCCCGCAAGAGTAAGTAAGCGTAAACCCGAGCGGGGCGACCAAGGTCGCCCCGTTTGACTGTGTAGGAGCGGGCTTGCCCGCGATGCAGgcgc < 2:1164017/150‑1 (MQ=255) gAGGCTGTAGCGCCAGACAATGAAAATGAAGAAGCTGCAGGTGCCGACGAGGCCCCGCAAGAGTAAGTAAGCGTAAACCCGAGCGGGGCGACCAAGGTCGCCCCGTTTGACTGTGTAGGAGCGGGCTTGCCCGCGATGCAGGCGCCACCg > 1:732972/1‑150 (MQ=255) gCTGTAGAGCCAGACAATGAAAATGAAGAAGCTGCAGGTGCCGACGAGGCCCCGCAAGAGTAAGTAAGCGTAAACCCGAGCGGGGCGACCAAGGTCGCCCCGTTTGACTGTGTAGGAGCGGGCTTGCCCGCGATGCAGGCGCCACCGATc > 1:164470/1‑150 (MQ=255) tGTAGCGCCAGACAATGAAAATGAAGAAGCTGCAGGTGCCGACGAGGCCCCGCAAGAGTAAGTAAGCGTAAACCCGAGCGGGGCGACCAAGGTCGCCCCGTTTGACTGTGTAGGAGCGGGCTTGCCCGCGATGCAGGCGCCACCGATCCt > 2:792178/1‑150 (MQ=255) tGTAGCGCCAGACAATGAAAATGAAGAAGCTGCAGGTGCCGACGAGGCCCCGCAAGAGTAAGTAAGCGTAAACCCGAGCGGGGCGACCAAGGTCGCCCCGTTTGACTGTGTAGGAGCGGGCTTGCCCGCGATGCAGGCGCCACCGATCCt < 1:713394/150‑1 (MQ=255) gcgcCAGACAATGAAAATGAAGAAGCTGCAGGTGCCGACGAGGCCCCGCAAGAGTAAGTAAGCGTAAACCCGAGCGGGGCGACCAAGGTCGCCCCGTTTGACTGTGTAGGAGCGGGCTTGCCCGCGATGCAGGCGCCACCGATCCTGCAt < 2:79380/150‑1 (MQ=255) gcCAGACAATGAAAATGAAGAAGCTGCAGGTGCCGACGAGGCCCCGCAAGAGTAAGTAAGCGTAAACCCGAGCGGGGCGACCAAGGTCGCCCCGTTTGACTGTGTAGGAGCGGGCTTGCCCGCGATGCAGGCGCCACCGATCCTGCATgg > 1:257681/1‑150 (MQ=255) gcCAGACAATGAAAATGAAGAAGCTGCAGGTGCCGACGAGGCCCCGCAAGAGTAAGTAAGCGTAAACCCGAGCGGGGCGACCAAGGTCGCCCCGTTTGACTGTGTAGGAGCGGGCTTGCCCGCGATGCAGGCGCCACCGATCCTGCATgg > 1:59600/1‑150 (MQ=255) aGACAATGAAAATGAAGAAGCTGCAGGTGCCGACGAGGCCCCGCAAGAGTAAGTAAGCGTAAACCCGAGCGGGGCGACCAAGGTCGCCCCGTTTGACTGTGTAGGAGCGGGCTTGCCCGCGATGCAGGCGCCACCGATCCTGc < 2:737669/143‑1 (MQ=255) aGACAATGAAAATGAAGAAGCTGCAGGTGCCGACGAGGCCCCGCAAGAGTAAGTAAGCGTAAACCCGAGCGGGGCGACCAAGGTCGCCCCGTTTGACTGTGTAGGAGCGGGCTTGCCCGCGATGCAGGCGCCACCGATCCTGc > 1:737669/1‑143 (MQ=255) cAATGAAAATGAAGAAGCTGCAGGTGCCGACGAGGCCCCGCAAGAGTAAGTAAGCGTAAACCCGAGCGGGGCGACCAAGGTCGCCCCGTTTGACTGTGTAGGAGCGGGCTTGCCCGCGATGCAGGCGCCACCGATCCTGCATGGAAtgtg < 1:243123/150‑1 (MQ=255) aaaatgaaGAAGCTGCAGGTGCCGACGAGGCCCCGCAAGAGTAAGTAAGCGTAAACCCGAGCGGGGCGACCAAGGTCGCCCCGTTTGACTGTGTAGGAGCGGGCTTGCCCGCGATGCAGGCGCCACCGATCCTGCATGGAATGTGGCCAc < 2:1203104/150‑1 (MQ=255) agaagCTGCAGGTGCCGACGAGGCCCCGCAAGAGTAAGTAAGCGTAAACCCGAGCGGGGCGACCAAGGTCGCCCCGTTTGACTGTGTAGGAGCGGGCTTGCCCGCGATGCAGGCGCCACCGATCCTGCAt < 1:1115136/130‑1 (MQ=255) agaagCTGCAGGTGCCGACGAGGCCCCGCAAGAGTAAGTAAGCGTAAACCCGAGCGGGGCGACCAAGGTCGCCCCGTTTGACTGTGTAGGAGCGGGCTTGCCCGCGATGCAGGCGCCACCGATCCTGCAt > 2:1115136/1‑130 (MQ=255) gaagCTGCAGGTGCCGACGAGGCCCCGCAAGAGTAAGTAAGCGTAAACCCGAGCGGGGCGACCAAGGTCGCCCCGTTTGACTGTGTAGGAGCGGGCTTGCCCGCGATGCAGGCGCCACCGATCCTGCATGGAATGTGGCCACCGAATTAc > 2:847109/1‑150 (MQ=255) gCTGCAGGTGCCGACGAGGCCCCGCAAGAGTAAGTAAGCGTAAACCCGAGCGGGGCGACCAAGGTCGCCCCGTTTGACTGTGTAGGAGCGGGCTTGCCCGCGATGCAGGCGCCACCGATCCTGCATGGAAtgtg > 2:52106/1‑134 (MQ=255) gCTGCAGGTGCCGACGAGGCCCCGCAAGAGTAAGTAAGCGTAAACCCGAGCGGGGCGACCAAGGTCGCCCCGTTTGACTGTGTAGGAGCGGGCTTGCCCGCGATGCAGGCGCCACCGATCCTGCATGGAAtgtg < 1:52106/134‑1 (MQ=255) cAGGTGCCGACGAGGCCCCGCAAGAGTAAGTAAGCGTAAACCCGAGCGGGGCGACCAAGGTCGCCCCGTTTGACTGTGTAGGAGCGGGCTTGCCCGCGATGCAGGCGCCACCGATCCTGCATGGAATGTGGCCACCGAATTACGATTTTg < 2:744218/150‑1 (MQ=255) gTGCCGACGAGGCCCCGCAAGAGTAAGTAAGCGTAAACCCGAGCGGGGCGACCAAGGTCGCCCCGTTTGACTGTGTAGGAGCGGGCTTGCCCGCGATGCAGGCGCCACCGATCCTGCATGGAATGTGGCCACCGAATTACGATTTTGTTc < 1:792178/150‑1 (MQ=255) ccGACGAGGCCCCGCAAGAGTAAGTAAGCGTAAACCCGAGCGGGGCGACCAAGGTCGCCCCGTTTGACTGTGTAGGAGCGGGCTTGCCCGCGATGCAGGCGCCACCGATCCTGCATGGAATGTGGCCACCGAATTACGATTTTGTTCTAt > 2:364641/1‑150 (MQ=255) gacgaGGCCCCGCAAGAGTAAGTAAGCGTAAACCCGAGCGGGGCGACCAAGGTCGCCCCGTTTGACTGTGTAGGAGCGGGCTTGCCCGCGATGCAGGCGCCACCGATCCTGCATGGAATGTGGCCACCGAATTACGATTTTGTTCTAttt < 2:59600/150‑1 (MQ=255) acgaGGCCCCGCAAGAGTAAGTAAGCGTAAACCCGAGCGGGGCGACCAAGGTCGCCCCGTTTGACTGTGTAGGAGCGGGCTTGCCCGCGATGCAGGCGCCACCGATCCTg < 1:667960/110‑1 (MQ=255) acgaGGCCCCGCAAGAGTAAGTAAGCGTAAACCCGAGCGGGGCGACCAAGGTCGCCCCGTTTGACTGTGTAGGAGCGGGCTTGCCCGCGATGCAGGCGCCACCGATCCTg > 2:667960/1‑110 (MQ=255) gCCCCGCAAGAGTAAGTAAGCGTAAACCCGAGCGGGGCGACCAAGGTCGCCCCGTTTGACTGTGTAGGAGCGGGCTTGCCCGCGATGCAGGCGCCACCGATCCTGCATGGAATGTGGCCACCGAATTACGATTTTGTTCTTTATGGCaga > 1:51190/1‑150 (MQ=255) gCCCCGCAAGAGTAAGTAAGCGTAAACCCGAGCGGGGCGACCAAGGTCGCCCCGTTTGACTGTGTAGGAGCGGGCTTGCCCGCGATGCAGGCGCCACCGATCCTGCATGGAATGTGGCCACCGAATTACGATTTTGTTCTATTTGGCaga > 1:310873/1‑150 (MQ=255) cccGCAAGAGTAAGTAAGCGTAAACCCGAGCGGGGCGACCAAGGTCGCCCCGTTTGACTGTGTAGGAGCGGGCTTGCCCGCGATGCAGGCGCCACCGATCCTGCATGGAATGTGGCCACCGAATTACGATTTTGTTCTATTTGGCAGAGc < 2:1098581/150‑1 (MQ=255) ccGCAAGAGTAAGTAAGCGTAAACCCGAGCGGGGCGACCAAGGTCGCCCCGTTTGACTGTGTAGGAGCGGGCTTGCCCGCGATGCAGGCGCCACCGATCCTGCATGGAATGTGGCCACCGAATTACGATTTTGTTCTATTTGGCAGAGCg > 1:421223/1‑150 (MQ=255) cGCAAGAGTAAGTAAGCGTAAACCCGAGCGGGGCGACCAAGGTCGCCCCGTTTGACTGTGTAGGAGCGGGCTTGCCCGCGATGCAGGCGCCACCGATCCTGCATGGAATGTGGCCACCGAATTACGATTTTGTTCTATTTGGCAGAGCga < 1:847109/150‑1 (MQ=255) agtaagCGTAAACCCGAGCGGGGCGACCAAGGTCGCCCCGTTTGACTGTGTAGGAGCGGGCTTGCCCGCGATGCAGGCGCCACCGATCCTGCATGGAATGTGGCCACCGAATTACGATTTTGTTCTATTTGGCAGAGCGAGAGTGGAtgt > 2:796275/1‑150 (MQ=255) gtaagCGTAAACCCGAGCGGGGCGACCAAGGTCGCCCCGTTTGACTGTGTAGGAGCGGGCTTGCCCGCGATGCAGGCGCCACCGATCCTGCATGGAATGTGGCCACCGAATTACGATTTTGTTCTATTTGGCAGAGCGAGAGTGGAtgtg > 1:823309/1‑150 (MQ=255) agCGTAAACCCGAGCGGGGCGACCAAGGTCGCCGCGTTTGACTGTGTAGGAGCGGGCTTGCCCGCGATGCAGCGCCCACCGATCCTGCATGGAATGTGGCCACCGAATTACGATTTTGTTCTATTTGGCAGAGCGAGAGTGGATGTGAGc < 1:869831/150‑1 (MQ=255) cccGAGCGGGGCGACCAAGGTCGCCCCGTTTGACTGTGTAGGAGCGGGCTTGCCCGCGATGCAGGCGCCACCGATCCTGCATGGAATGTGCCCTCCTAAGTACGATTTTGTCCTATTTGGCAGAGCGAGAGTGGATGTGAGCAAACGAGc < 2:164470/150‑1 (MQ=255) gCGGGGCGACCAAGGTCGCCCCGTTTGACTGTGTAGGAGCGGACTTGCCCGCGATGCAGGCGCCACCGATCCTGCATGGAATGTGGCCACCGAATTACGATTTTGTTCTATTTGGCAGAGCGAGAGTGGATGTGAGCAAACGAGCCttca > 1:92221/1‑148 (MQ=255) ggggCGACCTTGGTCGCCCCGTTTGACTGTGTAGGAGCGGGCTTGCCCGCGATGCAGGCGCCACCGATCCTGCATGGAATGTGGCCACCGAATTACGATTTTGTTCTATTTgg > 2:46375/1‑113 (MQ=255) ggggCGACCTTGGTCGCCCCGTTTGACTGTGTAGGAGCGGGCTTGCCCGCGATGCAGGCGCCACCGATCCTGCATGGAATGTGGCCACCGAATTACGATTTTGTTCTATTTgg < 1:46375/113‑1 (MQ=255) gggCGACCTTGGTCGCCCCGTTTGACTGTGTAGGAGCGGGCTTGCCCGCGATGCAGGCGCCACCGATCCTg < 2:134306/71‑1 (MQ=37) gggCGACCTTGGTCGCCCCGTTTGACTGTGTAGGAGCGGGCTTGCCCGCGATGCAGGCGCCACCGATCCTg > 1:134306/1‑71 (MQ=37) ggCGACCTTGGTCGCCCCGTTTGACTGTGTAGGAGCGGGCTTGCCCGCGATGCAGGCGCCACCGATCCTGCATGGAATGTGGCCACCGAATTACGATTTTGTTCTATTTGGCAGAGCGAGAGTGGATGTGAGCAAACGAGCCTTTAACtt > 1:6747/1‑150 (MQ=255) cAAGGTCGCCCCGTTTGACTGTGTAGGAGCGGGCTTGCCCGCGATGCAGGCGCCACCGATCCTGCATGGAATGTGGCCACCGAATTACGATTTTGTTCTATTTGGCAGAGCGAGAGTGGATGTGAGCAAACGAGCCTTTAACTTCTgcgc > 1:361420/1‑150 (MQ=255) | AGCCGTCCGAGGACGAACTCGATGAAGTGATCGAGACGGACGAGGAGGGTGTCGAGGCTGTAGCGCCAGACAATGAAAATGAAGAAGCTGCAGGTGCCGACGAGGCCCCGCAAGAGTAAGTAAGCGTAAACCCGAGCGGGGCGACCAAGGTCGCCCCGTTTGACTGTGTAGGAGCGGGCTTGCCCGCGATGCAGGCGCCACCGATCCTGCATGGAATGTGGCCACCGAATTACGATTTTGTTCTATTTGGCAGAGCGAGAGTGGATGTGAGCAAACGAGCCTTTAACTTCTGCGC > NC_002947/1973768‑1974062 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |