Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,031,900 | T→A | 8.7% | K130* (AAG→TAG) ‡ | kdsA‑II ← | 2‑dehydro‑3‑deoxyphosphooctonate aldolase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,031,900 | 0 | T | A | 8.7% | 140.3 / 3.9 | 46 | K130* (AAG→TAG) ‡ | kdsA‑II | 2‑dehydro‑3‑deoxyphosphooctonate aldolase |
Reads supporting (aligned to +/- strand): ref base T (21/21); new base A (2/2); total (23/23) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.96e-01 |
TCCACGATCAGGTTGTCGTAGCCCATGCAAGTGCCCCTGTCGCAAAGGATCAACTGGTCATTACCCGCTTCCTTGAACTTATGCACGATGTTCTGCATCTGCGAAGGGCTGAGGAATTGGGGCTTTTTGATGTTCACCGGCTTGCCGGTTTTGGCCAAGGCAACAACTAGGTCTGTTTGACGGGCGAGGAATGCCGGCAGCTGCAGCACATCGACGACTTCCGCCACCGGGGCCGTTTGGTAGATTTCGTGAACGTCGGTGATTATCGGCACGCCAAATTCTGCCTTCA > NC_002947/2031758‑2032046 | tCCACGATCAGGTTGTCGTAGCCCATGCAAGTGCCCCTGTCGCAAAGGATCAACTGGTCATTACCCGCTTCCTTGAACTTATGCACGATGTTCTGCATCTGCGAAGGGCTGAGGAATTGGGGCTTTTTGATGTTCACCGGCTTGCCGGtt < 1:361911/150‑1 (MQ=255) cACGATCAGGTTGTCGTAGCCCATGCAAGTAAACCTGTCGCAAAGGATCAACTGGTGATTACCGGCTTCCTTGAGCTTATGCACGATGTTCTGCATCTGCGAAGGGCTGAGGAATTGGGGCTTTTTGATGTTCACCGGCTTGCCGGtttt > 2:440595/1‑150 (MQ=255) gTTGTCGTAGCCCATGCAAGTGCCCCTGTCGCAAAGGATCAACTGGTCATTACCCGCTTCCTTGAACTTATGCACGATGTTCTGCATCTGCGAAGGGCTGAGGAATTGGGGCTTTTTGATGTTCACCGGCTTGCCGGTTTTGGCCAAGGc > 2:592761/1‑150 (MQ=255) tAGCCCATGCAAGTGCACCTGTCAAAAAGGATCATCTTGTCATTACCCGCGTCCTTGAACTTATGCACGATGTTCTGCATCTGCGAAGGGCTGAGGAATTGGGGCTTTTTGATGTTCACCGGCTTGCCGGTTTTGGCCAAGGCAACAACt < 2:10892/150‑1 (MQ=255) ccATGCAAGTGCCCCTGTCGCAAAGGATCAACTGGTCATTACCCGCTTCCTTGAACTTATGCACGATGTTCTGCATCTGCGAAGGGCTGAGGAGTTGGGGCTTTTTGATGTTCACCGGCAAGCCGGtgaaca < 2:993968/132‑6 (MQ=255) ccATGCAAGTGCCCCTGTCGCAAAGGATCAACTGGTCATTACCCGCTTCCTTGAACTTATGCACGATGTTCTGCATCTGCGAAGGGCTGAGGAGTTGGGGCTTTTTGATGTTCACCGGCAAGCCGGtgaaca > 1:993968/1‑127 (MQ=255) ccATGCAAGTGCCCCTGTCGCAAAGGATCAACTGGTCATTACCCGCTTCCTTGAACTTATGCACGATGTTCTGCATCTGCGAAGGGCTGAGGAATTGGGGCTTTTTGATGTTCACCGGCTTGCCGGTTTTGGCCAAGGCAACAACTAGGt > 2:1050780/1‑150 (MQ=255) aTGCAAGTGCCCCTGTCGCAAAGGATCAACTGGTCATTACCCGCTTCCTTGAACTTATGCACGATGTTCTGCATCTGCGAAGGGCTGAGGAATTGGGGCTTTTTGATGTTCACCGGCTTGCCGGTTTTGGCCAAGGCAACAACTAGGTCt > 2:573544/1‑150 (MQ=255) aTGCAAGTGCCCCTGTCGCAAAGGATCAACTGGTCATTACCCGCTTCCTTGAACTTATGCACGATGTTCTGCATCTGCGAAGGGCTGAGGAATTGGGGCTTTTTGATGTTCACCGGCTTGCCGGTTTTGGCCAAGGCAACAACTAGGTCt < 1:1181493/150‑1 (MQ=255) tGCAAGTGCCCCTGTCGCAAAGGATCAACTGGTCATTACCCGCTTCCTTGAACTTATGCACGATGTTCTGCATCTGCGAAGGGCTGAGGAATTGGGGCTTTTTGATGTTCACCGGCTTGCCGGTTTTGGCCAAGGCAACAACTAGGTCTg < 1:573544/150‑1 (MQ=255) gCAAGTGCCCCTGTCGCAAAGGATCAACTGGTCATTACCCGCTTCCTTGAACTTATGCACGATGTTCTGCATCTGCGAAGGGCTGAGGAATTGGGGCTTTTTGATGTTCACCGGCTTGCCGGTTTTGGCCAAGGCAACAACTAGGTCTGt > 1:530466/1‑150 (MQ=255) ccTGTCGCAAAGGATCAACTGGTCATTACCCGCTTCCTTGAACTTATGCACGATGTTCTGCATCTGCGAAGGGCTGAGGAATTGGGGCTTTTTGATGTTCACCGGCAAGCCGGtgaacat < 2:964484/120‑7 (MQ=255) ccTGTCGCAAAGGATCAACTGGTCATTACCCGCTTCCTTGAACTTATGCACGATGTTCTGCATCTGCGAAGGGCTGAGGAATTGGGGCTTTTTGATGTTCACCGGCAAGCCGGtgaacat > 1:964484/1‑114 (MQ=255) gTCGCAAAGGATCAACTGGTCATTACCCGCTTCCTTGAACTTATGCACGATGTTCTGCATCTGCGAAGGGCTGAGGAATTGGGGCTTTTTGATGTTCACCGGCTTGCCGGTTTTGGCCAAGGCAACAACTAGGTCTGTTTGACGGGCGAg < 2:737810/150‑1 (MQ=255) tCGCAAAGGATCAACTGGTCATTACCCGCTTCCTTGAACTTATGCACGATGTTCTGCATCTGCGAAGGGCTGAGGAATTGGGGCTTTTTGATGTTCACCGGCTTGCCGGTTTTGGCCAAGGCAACAACTAGGTCTGTTTGACGGGCGAgg < 2:1074908/150‑1 (MQ=255) gATCAACTGGTCATTACCCGCTTCCTTGAACTTATGCACGATGTTCTGCATCTGCGAAGGGCTGAGGAATTGGGGCTTTTTGATGTTCACCGGCTTGCCGGTTTTGGCCAAGGCAACAACTAGGTCTGTTTGACGGGCGAGGAATGCCgg > 2:819582/1‑150 (MQ=255) tGGTCATTACCCGCTTCCTTGAACTTATGCACGATGTTCTGCATCTGCGAAGGGCTGAGGAATTGGGGCTTTTTGATGTTCACCGGCTTGCCGGTTTTGGCCAAGGCAACAACTAGGTCTGTTTGACGGGCGAGGAATGCCGGCAGCTgc > 1:842752/1‑150 (MQ=255) gTCATTACCCGCTTCCTTGAACTTATGCACGATGTTCTGCATCTGCGAAGGGCTGAGGAATTGGGGCTTTTTGATGTTCACCGGCTTGCCGGTTTTg < 1:163105/97‑1 (MQ=255) gTCATTACCCGCTTCCTTGAACTTATGCACGATGTTCTGCATCTGCGAAGGGCTGAGGAATTGGGGCTTTTTGATGTTCACCGGCTTGCCGGTTTTg > 2:163105/1‑97 (MQ=255) ccGCTTCCTTGAACTTATGCACGATGTTCTGCATCTGCGAAGGGCTGAGGAATTGGGGCTTTTTGATGTTCACCGGCTTGCCGGTTTTGGCCAAGGCAACAACTAGGTCTGTTTGACGGGCGAGGAATGCCGGCAGCTGCAGCAGATcga > 2:929971/1‑150 (MQ=255) cGCTTCCTTGAACTTATGCACGATGTTCTGCATCTGCGAAGGGCTGAGGAATTGGGGCTTTTTGATGTTCACCGGCTTGCCGGTTTTGGCCAAGGCAACAACTAGGTCTGTTTGACGGGCGAGGAATGCCGGCAGCTGCAGCACATcgac < 2:842752/150‑1 (MQ=255) cGCTTCCTTGAACTTATGCACGATGTTCTGCATCTGCGAAGGGCTGAGGAATTGGGGCTTTTTGATGTTCACCGGCTTGCCGGTTTTGGCCAAGGCAACAACTAGGTCTGTTTGACGGGCGAGGAATGCCGGCAGCTGCAGCACATcgac < 2:530466/150‑1 (MQ=255) ccTTGAACTTATGCACGATGTTCTGCATCTGCGAAGGGCTGAGGAATTGGGGCTTTTTGATGTTCACCGGCTTGCCGGTTTTGGCCAAGGCAACAACTAGGTCTGTTTGACGGGCGAGGAATGCCgg > 2:889550/1‑127 (MQ=255) ccTTGAACTTATGCACGATGTTCTGCATCTGCGAAGGGCTGAGGAATTGGGGCTTTTTGATGTTCACCGGCTTGCCGGTTTTGGCCAAGGCAACAACTAGGTCTGTTTGACGGGCGAGGAATGCCgg < 1:889550/127‑1 (MQ=255) ttGAACTTATGCACGATGTTCTGCATCTGCGAAGGGCTGAGGAATTGGGGCTTTTTGATGTTCACCGGCTTGCCGGTTTTGGCCAAGGCAACAACTAGGTCTGTTTGACGGGCGAGGAATGCCGGCAGCTGCAGCACATCGACGACTTcc > 1:842747/1‑150 (MQ=255) tGAACTTATGCACGATGTTCTGCATCTGCGAAGGGCTGAGGAATTGGGGCTTTTTGATGTTCACCGGCTTGCCGGTTTTGGCCAAGGCAACAACTAg > 1:832241/1‑97 (MQ=255) tGAACTTATGCACGATGTTCTGCATCTGCGAAGGGCTGAGGAATTGGGGCTTTTTGATGTTCACCGGCTTGCCGGTTTTGGCCAAGGCAACAACTAg < 2:832241/97‑1 (MQ=255) ttATGCACGATGTTCTGCATCTGCGAAGGGCTGAGGAATTGGGGCTTTTTGATGTTCACCGGCTTGCCGGTTTTGGCCAAGGCAACAACTAGGTCTGTTTGACGGGCGAGGAATGCCGGCAGCTGCAGCGCATCGACGACTTCCGCCAcc > 1:173213/1‑150 (MQ=255) ttATGCACGATGTTCTGCATCTGCGAAGGGCTGAGGAATTGGGGCTTTTTGATGTTCACCGGCTTGCCGGTTTTGGCCAAGGCAACAACTAGGTCTGTTTGACGGGCGAGGAATGCCGGCAGCTGCAGCACATCGACGACTTCCGCCAcc > 2:950878/1‑150 (MQ=255) cACGATGTTCTGCATCTGCGAAGGGCTGAGGAATTGGGGCTTTTTGATGTTCACCGGCTTGCCGGTTTTGGCCAAGGCAACAACTAGGTCTGTTTGACGGGCGAGGAATGCCGGCAGCTGCAGCACATCGACGACTTCCGCCACCGGGGc > 2:1186044/1‑150 (MQ=255) tCTGCATCTGCGAAGGGCTGAGGAATTGGGGCTTTTTGATGTTCACCGGCTTGCCGGTTTTGGCCAAGGCAACAACTAGGTCTGTTTGACGGGCGAGGAATGCCGGCAGCTGCAGCACATCGACGACTTCCGCCACCGGGGCCGTTTGGt > 2:1082734/1‑150 (MQ=255) gAAGGGCTGAGGAATTGGGGCTTTTTGATGTTCACCGGCTTGCCGGTTTTGGCCCAGGCAACAACTAGGTCTGTGTGACCAGCGAGGATTGCCGGCAGCTATATGAAATCGACGACTTCGGCCACCGGGGCCGTTTGGTAGATTTCGTGa < 1:929971/150‑1 (MQ=255) gAAGGGCTGAGGAATTGGGGCTTTTTGATGTTCACCGGCTTGCCGGTTTTGGCCAAGGCAACAACTAGGTCTGTTTGACGGGCGAGGAATGCCGGCAGCTGCAGCACATCGACGACTTCCGCCACCGGGGCCGTTTGGTAGATTTCGTGa < 1:1187441/150‑1 (MQ=255) tGAGGAATTGGGGCTTTTTGATGTTCACCGGCTTGCCGGTTTTGGCCAAGGCAACAACTAGGTCTGTTTGACGGGCGAGGAATGcc > 2:227351/1‑86 (MQ=255) tGAGGAATTGGGGCTTTTTGATGTTCACCGGCTTGCCGGTTTTGGCCAAGGCAACAACTAGGTCTGTTTGACGGGCGAGGAATGcc < 1:227351/86‑1 (MQ=255) tGAGGAATTGGGGCTTTTTGATGTTCACCGGCTTGCCGGTTTTGGCCAAGGCAACAACTAGGTCTGTTTGACGGGCGAGGAATGCCGGCAGCTGCAGCACATCGACGACTTCCGCCACCGGGGCCGTTTg > 1:315845/1‑130 (MQ=255) tGAGGAATTGGGGCTTTTTGATGTTCACCGGCTTGCCGGTTTTGGCCAAGGCAACAACTAGGTCTGTTTGACGGGCGAGGAATGCCGGCAGCTGCAGCACATCGACGACTTCCGCCACCGGGGCCGTTTg < 2:315845/130‑1 (MQ=255) tGAGGAATTGGGGCTTTTTGATGTTCACCGGCTTGCCGGTTTTGGCCAAGGCAACAACTAGGTCTGTTTGACGGGCGAGGAATGCCGGCAGCTGCAGCACATCGACGACTTCCGCCACCGGGGCCGTTTGGTAGATTTCGTGAACGTCgg > 2:432042/1‑150 (MQ=255) ggAATTGGGGCTTTTTGATGTTCACCGGCTTGCCGGTTTTGGCCAAGGCAACAACTAGGTCTGTTTGACGGGCGAGGAATGCCGGCAGCTGCAGCACATCGACGACTTCCGCCACCGGGGCCGTTTGGTAGATTTCGTGAACGTCGGTGa < 1:1082734/150‑1 (MQ=255) ttCACCGGCTTGCCGGTTTTGGCCAAGGCAACAACTAGGTCTGTTTGACGGGCGAGGAATGCCGGCAGCTGCAGCACATCGACGACTTCCGCCACCGGGGCCGTTTGGTAGATTTCGTGAACGTCGGTGATTATCGGCACGCCAAATTCt < 1:592761/150‑1 (MQ=255) cACCGGCTTGCCGGTTTTGGCCAAGGCAACAACTAGGTCTGTTTGACGGGCGAGGAATGCCGGCAGCTGCAGCACATCGACGACTTCCGCCACCGGGGCCGTTTGGTAGATTTCGTGAACGTCGGTGATTATCGGCACGCCAAATTCTGc < 2:842747/150‑1 (MQ=255) cACCGGCTTGCCGGTTTTGGCCAAGGCAACAACTAGGTCTGTTTGACGGGCGAGGAATGCCGGCAGCTGCAGCACATCGACGACTTCCGCCACCGGGGCCGTTTGGTAGATTTCGTGAACGTCGGTGATTATCGGCACGCCAAATTCTGc < 1:950878/150‑1 (MQ=255) aCCGGCTTGCCGGTTTTGGCCAAGGCAACAACTAGGTCTGTTTGACGGGCGAGGAATGCCGGCAGCTGCAGCACATCGACGACTTCCGCCACCGGGGCCGTTTGGTAGATTTCGTGAACGTCGGTGATTATCGGCACGCCAAATTCTGcc < 1:1050780/150‑1 (MQ=255) gCTTGCCGGTTTTGGCCAAGGCAACAACTAGGTCTGTTTGACGGGCGAGGAATGCCGGCAGCTGCAGCACATCGACGACTTCCGCCACCGGGGCCGTTTg > 1:1020150/1‑100 (MQ=255) gCTTGCCGGTTTTGGCCAAGGCAACAACTAGGTCTGTTTGACGGGCGAGGAATGCCGGCAGCTGCAGCACATCGACGACTTCCGCCACCGGGGCCGTTTg < 2:1020150/100‑1 (MQ=255) gCTTGCCGGTTTTGGCCAAGGCAACAACTAGGTCTGTTTGACGGGCGAGGAATGCCGGCAGCTGCAGCACATCGACGACTTCCGCCACCGGGGCCGTTTGGTAGATTTCGTGAACGTCGGTGATTATCGGCACGCCAAATTCTGCCTTCa > 1:940507/1‑150 (MQ=255) | TCCACGATCAGGTTGTCGTAGCCCATGCAAGTGCCCCTGTCGCAAAGGATCAACTGGTCATTACCCGCTTCCTTGAACTTATGCACGATGTTCTGCATCTGCGAAGGGCTGAGGAATTGGGGCTTTTTGATGTTCACCGGCTTGCCGGTTTTGGCCAAGGCAACAACTAGGTCTGTTTGACGGGCGAGGAATGCCGGCAGCTGCAGCACATCGACGACTTCCGCCACCGGGGCCGTTTGGTAGATTTCGTGAACGTCGGTGATTATCGGCACGCCAAATTCTGCCTTCA > NC_002947/2031758‑2032046 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |