| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,058,356 | G→C | 10.8% | intergenic (‑99/‑138) | PP_1833 ← / → PP_1834 | hypothetical protein/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,058,356 | 0 | G | C | 10.8% | 106.8 / 3.2 | 37 | intergenic (‑99/‑138) | PP_1833/PP_1834 | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base G (18/15); new base C (2/2); total (20/17) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.00e-01 | |||||||||||
TTTTGCTGGATGAGGTCCATATCAACTCCTGGCTGTTGTGTGGCAGACATGAGTTGATGGTTGCAGTGACCGTGCCAGAATCCTGGCTGGCGAAAAACCCAGTAAATACAGGCGGTTACGGGGAATTTCCAGAAGCGGCATCGTGCAGGCTGCACGGTCGTGCATTTTGCACAGTGCATTTTGCACGGGTCAGGGTTTGCCTATCGGCTTCATAGAATCTGAACCTTTGACCGCAATGGCATGCCTGACGAACACTTGGGCCATCAATTATGCCAGGAGGTTCCCTATGTCCAGCC > NC_002947/2058208‑2058503 | ttttGCTGGATGAGGTCCATATCAACTCCTGGCTGTTGTGTGGCAGACATGAGTTGATGGTTGCAGTGACCGTGCCAGAATCCTGGCTGGCGAAAAACCCAGTAAATACAGGCGGTTACGGGGAATTTCCAGAAGCGGCATCGTGCAGGc > 2:456693/1‑150 (MQ=255) gCTGGATGAGGTCCATATCAACTCCTGGCTGTTGTGTGGCAGACATGAGTTGATGGTTGCAGTGACCGTGCCAGAATCCTGGCTGGCGAAAAACCCAGTAAATACAGGCGGTTACGGGGAATTTCCAGAAGCGGCATCGTGCAGCCTGCa > 2:682322/1‑150 (MQ=255) aTGAGGTCCATATCAACTCCTGGCTGTTGTGTGGCAGACCTGAGTTGATGGTTGCAGTGACCGTGCCAGAATCCTGGCTGGCGAAAAACCCCGTAAATACAGGCGGTTACGGGGAATTCCGTCTGCCGGCATCGTGCAGGCTGCACGGTc < 1:337298/150‑1 (MQ=255) tGAGGTCCATATCAACTCCTGGCTGTTGTGTGGCAGACATGAGTTGATGGTTGCAGTGACCGTGCCAGAATCCTGGCTGGCGAAAAACCCAGTAAATACAGGCGGTTACGGGGAATTTCCAGAAGCGGCATCGTGCAGCCTGCACgatgc < 1:682322/150‑5 (MQ=255) atatCAACTCCTGGCTGTTGTGTGGCAGACATGAGTTGATGGTTGCAGTGACCGTGCCAGAATCCTGGCTGGCGAAAAACCCAGTAAATACAGGCGGTTACGGGGAATTTCCAGAAGCGGCATCGTGCAGGCTGCACGGTCGTGCAtttt < 1:45669/150‑1 (MQ=255) cTGGCTGTTGTGTGGCAGACATGAGTTGATGGTTGCAGTGACCGTGCCAGAATCCTGGCTGGCGAAAAACCCAGTAAATACAGGCGGTTACGGGGAATTTCCAGAAGCGGCATCGTGCAGGCTGCACGGTc < 1:594286/131‑1 (MQ=255) cTGGCTGTTGTGTGGCAGACATGAGTTGATGGTTGCAGTGACCGTGCCAGAATCCTGGCTGGCGAAAAACCCAGTAAATACAGGCGGTTACGGGGAATTTCCAGAAGCGGCATCGTGCAGGCGGCACGGTc > 2:594286/1‑131 (MQ=255) gAGTTGATGGTTGCAGTGACCGTGCCAGAATCCTGGCTGGCGAAAAACCCAGTAAATACAGGCGGTTACGGGGAATTTCCAGAAGCGGCATCGTGCAGGCTGCACGGTCGTGCATTTTGCACAGTGCATTTTGTACGGGTCAGGGTTTGc < 1:456693/150‑1 (MQ=255) aGTGACCGTGCCAGAATCCTGGCTGGCGAAAAACCCAGTAAATACAGGCGGTTACGGGGAATTTCCAGAAGCGGCATCGTGCAGCCTGCACgatgc < 1:1028179/96‑5 (MQ=255) aGTGACCGTGCCAGAATCCTGGCTGGCGAAAAACCCAGTAAATACAGGCGGTTACGGGGAATTTCCAGAAGCGGCATCGTGCAGCCTGCACgatgc > 2:1028179/1‑92 (MQ=255) aCCGTGCCAGAATCCTGGCTGGCGAAAAACCCAGTAAATACAGGCGGTTACGGGGAATTTCCAGAAGCGGCATCGTGCAGGCTGCACGGTCGTGCATTTTGCACAGTGCATTTTGCACGGGTCAGGGTTTGCCTATCGGCTTCATAGAAt > 2:618066/1‑150 (MQ=255) aCCGTGCCAGAATCCTGGCTGGCGAAAAACCCAGTAAATACAGGCGGTTACGGGGAATTTCCAGAAGCGGCATCGTGCAGGCTGCACGGACGCTGGTGTTGCACAGTGCATTTTGCACGGGTCAGGGTTTGCCTATCGGCTTCATAGAAt > 1:317963/1‑150 (MQ=255) tGCCAGAATCCTGGCTGGCGAAAAACCCAGTAAATACAGGCGGTTACGGGGAATTTCCAGAAGCGGCATCGTGCAGGCTGCACGGTCGTGCATTTTGCACAGTGCATTTTGCACGGGTCAGGGTTTGCCTATCGGCTTCATAGAATCTGa < 2:639314/150‑1 (MQ=255) cAGAATCCTGGCTGGCGAAAAACCCAGTAAATACAGGCGGTTACGGGGAATTTCCAGAAGCGGCATCGTACAGGCTGCACGGTCGTGCATTTTGCACAGTGCATTTTGCACGGGTCAGGGTTTGCCTATCGGCTTCATAGAATCTGAAcc > 1:129033/1‑150 (MQ=255) gAAAAACCCAGTAAATACAGGCGGTTACGGGGAATTTCCAGAAGCGGCATCGTGCAGGCTGCACGGTCGTGCATTTTGCACAGTGCAttt > 2:969106/1‑90 (MQ=255) gAAAAACCCAGTAAATACAGGCGGTTACGGGGAATTTCCAGAAGCGGCATCGTGCAGGCTGCACGGTCGTGCATTTTGCACAGTGCAttt > 2:969145/1‑90 (MQ=255) gAAAAACCCAGTAAATACAGGCGGTTACGGGGAATTTCCAGAAGCGGCATCGTGCAGGCTGCACGGTCGTGCATTTTGCACAGTGCAttt < 1:969145/90‑1 (MQ=255) gAAAAACCCAGTAAATACAGGCGGTTACGGGGAATTTCCAGAAGCGGCATCGTGCAGGCTGCACGGTCGTGCATTTTGCACAGTGCAttt < 1:969106/90‑1 (MQ=255) cAGTAAATACAGGCGGTTACGGGGAATTTCCAGAAGCGGCATCGTGCAGGCTGCACGGTCGTGCATTTTGCACAGTGCCAGATGCACGGGTCAGGGTTTGCCTATCGGCTTCATAGAATCTGAACCTTTGACCGCAATGGCATGCCTGAc > 1:75195/1‑150 (MQ=255) cAGTAAATACAGGCGGTTACGGGGAATTTCCAGAAGCGGCATCGTGCAGGCTGCACGGTCGTGCATTTTGCACAGTGCATTTTGCACGGGTCAGGGTTTGCCTATCGGCTTCATAGAATCTGAACCTTTGACCGCAATGGCATGCCTGAc > 2:293586/1‑150 (MQ=255) gTAAATACAGGCGGTTACGGGGAATTTCCAGAAGAGGCATCGTGGAGGCGGCACGGTCGTGCCTTTTGCACACTCGCTTTAATGTTGGCAATGACTGGCTTATCGGCTTCATAGAATCTGAACCTTTGACCGCAATGACATGCCTGACGa > 1:574723/1‑150 (MQ=255) aGGCGGTTACGGGGAATTTCCAGAAGCGGCATCGTGCAGGCTGCACGGTCGTGCATTTTGCACAGTGCATTTTGCACGGGTCAGGGTTTGCCTATCGGCTTCATAGAATCTGAACCTTTGACCGCAATGGCATGCCTGACGAACACTTgg < 2:785697/150‑1 (MQ=255) aGGCGGTTACGGGGAATTTCCAGAAGCGGCATCGTGCAGGCTGCACGGTCGTGCATTTTGCACAGTGCATTTTGCACGGGTCAGGGTTTGCCTATCGGCTTCATAGAATCTGAACCTTTGACCGCAATGGCATGCCTGACGAACACTTgg < 1:618066/150‑1 (MQ=255) gCGGTTACGGGGAATTTCCAGAAGCGGCATCGTGCAGGCTGCACGGTc > 1:192118/1‑48 (MQ=255) gCGGTTACGGGGAATTTCCAGAAGCGGCATCGTGCAGGCTGCACGGTc < 2:192118/48‑1 (MQ=255) ggggAATTTCCAGAAGCGGCATCGTGCAGGCTGCACGGTCGTGCATTTTGCACAGTGCATTTTGCAc < 1:96211/67‑1 (MQ=255) ggggAATTTCCAGAAGCGGCATCGTGCAGGCTGCACGGTCGTGCATTTTGCACAGTGCATTTTGCAc > 2:96211/1‑67 (MQ=255) ggggAATTTCCAGAAGCGGCATCGTGCAGGCTGCACGGTCGTGCATTTTGCACAGTGCATTTTGCACGGGTCAGGGTTTGCCTATCGGCTTCATAGAATCTGAACCTTTGACCGCAATGGCATGCCTGACGAACACTTGGGCCATCAAtt > 1:774490/1‑150 (MQ=255) ccAGAAGCGGCATCGTGCAGGCTGCACGGTCGTGCATTTTGCACAGTGCATTTTGCACGGGTCAGGGTTTGCCTATCGGCTTCATAGAATCTGAACCTTTGACCGCAATGGCATGCCTGACGAACACGTGGGCCATCAATTATGCCagga < 1:293586/150‑1 (MQ=255) ccAGAAGCGGCATCGTACAGGCTGCACGGTCGTGCATTTTGCACAGTGCATTTTGCACGGGTCAGGGTTTGCCTATCGGCTTCATAGAATCTGAACCTTTGACCGCAATGGCATGCCTGACGAACACTTGGGCCATCAATTATGCCagga < 2:129033/150‑1 (MQ=255) aGAAGCGGCATCGTGCAGGCTGCACGGTCGTGCATTTTGCACAGTGCATTTTGCACGGGTCAGGGTTTGc > 2:879481/1‑70 (MQ=255) aGAAGCGGCATCGTGCAGGCTGCACGGTCGTGCATTTTGCACAGTGCATTTTGCACGGGTCAGGGTTTGc < 1:879481/70‑1 (MQ=255) aGAAGCGGCATCGTGCAGGCTGCACGGTCGTGCATTTTGCACAGTGCATTTTGCACGGGTCAGGGTTTGCCTATCGGCTTCATAGAATCTGAACCTTTGACCGCAATGGCATGCCTGACGAACACTTGGGCCATCAATTATGCCaggagg > 2:752782/1‑150 (MQ=255) gAAGCGGCATCGTGCAGGCTGCACGGTCGTGCATTTTGCACAGTGCATTTTGCACGGGTCAGGGTTTGCCTATCGGCTTCATAGAATCTGAACCTTTGACCGCAATGGCATGCCTGACGAACACTTGGGCCATCAATTATGCCAGGAGGt > 2:761969/1‑150 (MQ=255) aaGCGGCATCGTGCAGGCTGCACGGTCGTGCATTTTGCACAGTGCATTTTGCACGGGTCAGGGTTTGCCTATCGGCTTCATAGAATCTGAACCTTTGACCGCAATGGCATGCCTGACGAACACTTGGGCCATAAATTATGCCagtatttt > 2:991483/1‑144 (MQ=255) gCGGCATCGTGCAGGCTGCACGGTCGTGCATTTTGCACAGTGCATTTTGCACGGGTCAGGGTTTGCCTATCGGCTTCATAGAATCTGAACCTTTGACCGCAATGGCATGCCTGACGAACACTTGGGCCATCAATTATGCCAGGAGGTTcc < 2:574723/150‑1 (MQ=255) aGGCTGCACGGTCGTGCATTTTGCACAGTGCATTTTGCACGGGTCAGGGTTTGCCTATCGGCTTCATAGAATCTGAACCTTTGACCGCAATGGCATGCCTGACGAACACTTGGGCCATCAATTATGCCAGGAGGTTCCCTATGTCCAGcc > 1:525337/1‑150 (MQ=255) | TTTTGCTGGATGAGGTCCATATCAACTCCTGGCTGTTGTGTGGCAGACATGAGTTGATGGTTGCAGTGACCGTGCCAGAATCCTGGCTGGCGAAAAACCCAGTAAATACAGGCGGTTACGGGGAATTTCCAGAAGCGGCATCGTGCAGGCTGCACGGTCGTGCATTTTGCACAGTGCATTTTGCACGGGTCAGGGTTTGCCTATCGGCTTCATAGAATCTGAACCTTTGACCGCAATGGCATGCCTGACGAACACTTGGGCCATCAATTATGCCAGGAGGTTCCCTATGTCCAGCC > NC_002947/2058208‑2058503 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |