| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,068,195 | A→T | 16.2% | intergenic (‑97/+24) | plsC ← / ← PP_1845 | 1‑acyl‑sn‑glycerol‑3‑phosphate acyltransferase/enoyl‑CoA hydratase/isomerase family protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,068,195 | 0 | A | T | 16.2% | 92.2 / 11.3 | 37 | intergenic (‑97/+24) | plsC/PP_1845 | 1‑acyl‑sn‑glycerol‑3‑phosphate acyltransferase/enoyl‑CoA hydratase/isomerase family protein |
| Reads supporting (aligned to +/- strand): ref base A (15/16); new base T (4/2); total (19/18) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.60e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.19e-01 | |||||||||||
AACGGCAAGAAAATGCAGCCCCAGCAGGAACATACGCAATGAATAAAGCATGGTACGACTCACACCAGACGGTCGCGGGGCAGTGTACGGGTGTGCACTGGCTGGGGCAAACCTTGGTGCAGGCCTGTTACGGCCCTTTCGCGGGCAAGCCCGCGAAAAGGGCCCGTGCGGCTAGCCAATATGCTGCTGATCCAGCTCGATCGCCTTGTCCAGCGCCTCCAGCAGCCCTTTGCGCACTTTCAGCTTGGTGTTCTTGTGCGCCAGCATGTTCAGCTTCTTCAGCTCCCGCGCT > NC_002947/2068048‑2068339 | aaCGGCAAGAAAATGCAGCCCCAGCAGGAACATACGCAATGAATAAAGCATGGTACGACTCACACCAGACGGTCGCGGGGCAGTGTACGGGTGTGCACTGGCTGGGGCAAACCTTGGTGCAGGCCTGTTACGGCCCTTTCGCGGGCAAGc < 2:1031043/150‑1 (MQ=255) gAAAATGCAGCCCCAGCAGGAACATACGCAATGAATAAAGCATGGTACGACTCACACCAGACGGTCGCGGGGCAGTGTACGGGTGTGCACTGGCTGGGGCAAACCTTGGTGCAGGCCTGTTACGGCCCTTTCGCGGGCAAGCCCGCGaaa > 1:970431/1‑150 (MQ=255) aaaaTGCAGCCCCAGCAGGAACATACGCAATGAATAAAGCATGGTACGACTCACACCAGACGGTCGCGGGGCAGTGTACGGGTGTGCACTGGCTGGGGCAAACCTTGGTGCAGGCCTGTTACGGCCCTTTCGCGGGCAAGCCCGCGaaaa < 1:712067/150‑1 (MQ=255) aaTGCAGCCCCAGCAGGAACATACTCAATGAATAAAGCATGGTACGACTCACACCAGACGGTCGCGGGGCAGTGTACGGGTGTGCACTGGCTGGGGCAAACCTTGGTGCAGGCCTGTTACGGCCCTTTCGCGGGCAAGCCCGCGAAAAgg < 1:731871/150‑1 (MQ=255) aTGCAGCCCCAGCAGGAACATACGCAATGAATAAAGCATGGTACGACTCACACCAGACGGTCGCGGGGCAGTGTACGGGTGTGCACTGGCTGGGGCAAACCTTGGTGCAGGCCTGTTACGGCCCTTTCGCGGGCAAGCCCGCGAAAAggg < 2:241836/150‑1 (MQ=255) tGCAGCCCCAGCAGGAACATACGCAATGAATAAAGCATGGTACGACTCACACCAGACGGTCGCGGGGCAGTGTACGGGTGTGCACTGGCTGGGGCAAACCTTGGTGCAGGCCTGTTACGGCCCTTTCGCGGGCAAGCCCGCGaaaa < 1:1082365/146‑1 (MQ=255) tGCAGCCCCAGCAGGAACATACGCAATGAATAAAGCATGGTACGACTCACACCAGACGGTCGCGGGGCAGTGTACGGGTGTGCACTGGCTGGGGCAAACCTTGGTGCAGGCCTGTTACGGCCCTTTCGCGGGCAAGCCCGCGaaaa > 2:1082365/1‑146 (MQ=255) cAGCCCCAGCAGGAACATACGCAATGAATAAAGCATGGTACGACTCACACCAGACGGTCGCGGGGCAGTGTACGGGTGTGCACTGGCGGGGGCAAACCTTGGTGCAGGCCTGTTACGGCCCTTTCGCGGGCAAGCCCGCGAAAAGGGccc < 1:290244/150‑1 (MQ=255) cctataagGAACATACGCAATGAATAAAGCATGGTACGACTCACACCAGACGGTCGCGGGGCAGTGTACGGGTGTGCACTGGCTGGGGCAAACCTGGGTGCAGGCCTGTTACGGCCCTTTCGCGGGCAAGCCCGCGAAAAGGGCCCGTGc < 2:1092803/144‑1 (MQ=255) cagcagGAACATACGCAATGAATAAAGCATGGTACGACTCACACCAGACGGTCGCGGGGCAGTGTACGGGTGTGCACTGGCTGGGGCAAACCTTGGTGCAGGCCTGTTACGGCCCTTTCGCGGGCAAGCCCGCGAAAAGGGCCCGTGCgg < 2:101235/150‑1 (MQ=255) cAATGAATAAAGCATGGTACGACTCACACCAGACGGTCGCGGGGCAGTGTACGGGTGTGCACTGGCTGGGGCAAACCTTGGTGCAGGCCTGTTACGGCCCTGTCGCGGGCAAGCCCGCGAAAAGGGCCCGTGCGGCTAGCCAATAtgctg < 1:372432/150‑1 (MQ=255) gAATAAAGCATGGTACGACTCACACCAGACGGTCGCGGGGCAGTGTACGGGTGTGCACTGGCTGGGGCAAACCTTGGTGCAGGCCTGTTACGGCCCTTTCGCGGGCAAGCCCGCGAAAAGGGCCCGTGCGGCTAGCCAATATGCTGCTGa > 1:469047/1‑150 (MQ=255) tAAAGCATGGTACGACTCACACCAGACGGTCGCGGGGCAGTGTACGGGTGTGCACTGGCTGGGGCAAACCTTGGTGCAGGCCTGTTACGGCCCTTTCGCGGGCAAGCCCGCGAAAAGGGCCCGTGCGGCTAGCCAATATGCTGCTGATcc > 1:703695/1‑150 (MQ=255) tACGACTCACACCAGACGGTCGCGGGGCAGTGTACGGGTGTGCACTGGCTGGGGCAAACCTTGGTGCAGGCCTGTTACGGCCCTTTCGCGGGCAAGCCCGCGAAAAGGGCCCGTGCGGCTAGCCAATATGCTCCTGATCCAGCTCGATCg > 1:774834/1‑150 (MQ=255) acacCAGACGGTCGCGGGGCAGTGTACGGGTGTGCACTGGCTGGGGCAAACCTTGGTGCAGGCCTGTTACGGCCCTTTCGCGGGCAAGCCCGCGAAAAGGGCCCGTGCGGCTAGCCAat > 2:191904/1‑119 (MQ=255) acacCAGACGGTCGCGGGGCAGTGTACGGGTGTGCACTGGCTGGGGCAAACCTTGGTGCAGGCCTGTTACGGCCCTTTCGCGGGCAAGCCCGCGAAAAGGGCCCGTGCGGCTAGCCAat < 1:191904/119‑1 (MQ=255) acacCAGACGGTCGCGGGGCAGTGTACGGGTGTGCACTGGCTGGGGCAAACCTTGGTGCAGGCCTGTTACGGCCCTTTCGCGGGCAAGCCCGCGAAAAGGGCCCGTGCGGCTAGCCAATATGCTGCTGATc > 1:355749/1‑131 (MQ=255) acacCAGACGGTCGCGGGGCAGTGTACGGGTGTGCACTGGCTGGGGCAAACCTTGGTGCAGGCCTGTTACGGCCCTTTCGCGGGCAAGCCCGCGAAAAGGGCCCGTGCGGCTAGCCAATATGCTGCTGATc < 2:355749/131‑1 (MQ=255) gACGGTCGCGGGGCAGTGTACGGGTGTGCACTGGCTGGGGCAAACCTTGGTGCAGGCCTGTTACGGCCCTTTCGCGGGCAAGCCCGCGAAAAGGGCCCGTGCGGCTAGCCAATATGCTGCTGATCCAGCTCGATCGCCTTGTCCAGCGcc > 2:152425/1‑150 (MQ=255) gggTGTGCACTGGCTGGGGCAAACCTTGGTGCAGGCCTGTTACGGCCCTTTCGCGGGCAAGCCCGCGAAAAGGGACCGTGCGGCTAGCCAATATGCTGCTGATCCAGCTCGATCGCCTTGTCCAGCGCCTCCAGCAGCCCTTTGCGCACt > 1:1099097/1‑150 (MQ=255) ggCAAACCTTGGTGCAGGCCTGTTACGGCCCTTTCGCGGGCAAGCCCGCGAAAAGGGCCCGTGCGGCTAGCCAATATGCTGCTGATCCAGCTCGATCGCCTTGTCCAGCGCCTCCAGCAGCCCTTTGCGCACTTTCAGCTTGGTGTTCtt < 2:970431/150‑1 (MQ=255) gCAAACCTTGGTGCAGGCCTGTTACGGCCCTTTCGCGGGCAAGCCCGCGAAAAGGGCCCGTGCGGCTAGCCAATATGCTGCTGATCCAGCTCGATCGCCTTGTCCAGCGCCTCCAGCAGCCCTTTGCGCACTTTCAGCTTGGTGTTCTtg > 2:685315/1‑150 (MQ=255) aaaCCTTGGTGCAGGCCTGTTACGGCCCTTTCGCGGGCAAGCCCGCGAAAAGGGCCCGTGCGGCTAGCCAATATGCTGCTGATCCAGCTCGATCGCCTTGTCCa < 2:140067/104‑1 (MQ=255) aaaCCTTGGTGCAGGCCTGTTACGGCCCTTTCGCGGGCAAGCCCGCGAAAAGGGCCCGTGCGGCTAGCCAATATGCTGCTGATCCAGCTCGATCGCCTTGTCCa > 1:140067/1‑104 (MQ=255) cTTGGTGCAGGCCTGTTACGGCCCTTTCGCGGGCAAGCCCGCGAAAAGGGCCCGTGCGGCTAGCCAATATGCTGCTGATCCAGCTCGATCGCCTTGTCCAGCGCCTCCAGCAGCCCTTTGCGCACTTTCAGCTTGGTGTTCTTGTGCGcc > 1:628249/1‑150 (MQ=255) cGGCCCTTTCGCGGGCAAGCCCGCGAAAAGGGCCCGTGCGGCTAGCCAATATGCTGCTGATCCAGCTCGATCGCCTTGTCCAGTGCCTCCAGCAGCCCTTTGCGCACTTTCAGCTTGGTGTTCTTGTGCGCCAGCATGTTCAGCttcttc > 2:811788/1‑150 (MQ=255) cGGCCCTTTCGCGGGCAAGCCCGCGAAAAGGGCCCGTGCGGCTAGCCAATATGCTGCTGATCCAGCTCGATCGCCTTGTCCAGCGCCTCCAGCAGCCCTTTGCGCACTTTCAGCTTGGTGTTCTTGTGCGCCAGCATGTTCAGCttcttc < 1:483645/150‑1 (MQ=255) cGGCCCTTTCGCGGGCAAGCCCGCGAAAAGGGCCCGTGCGGCTAGCCAATATGCTGCTGATCCAGCTCGATCGCCTTGTCCAGCGCCTCCAGCAGCCCTTTGCGCACTTTCAGCTTGGTGTTCTTGTGCGCCAGCATGTTCAGCttcttc < 1:152425/150‑1 (MQ=255) ggCCCTTTCGCGGGCAAGCCCGCGAAAAGGGCCCGTGCGGCTAGCCAATATGCTGCTGATCCAGCTCGATCGCCTTGTCCAGCGCCTCCAGCAGCCCTTTGCGCACTTTCAGCTTGGTGTTCTTGTGCGCCAGCATGTTCAGCTTCTTCa < 2:703695/150‑1 (MQ=255) ggCCCTTTCGCGGGCAAGCCCGCGAAAAGGGCACGTACGGCTAGCCAATATGCTGCTGATCAAGCTTGATCGCCTTGTCCAGCGCCTCCAGCAGCCCTTTGCGCACTTTCAGCTTGGTGTTCTTGTGCGCCAGCATGTTCAGCAtcatca > 1:179644/1‑150 (MQ=255) ccttttCGCGGGCTTGCCCGCG‑AAAGGGCCCGTGCGGCTAGCCAATATGCTGCTGATCCAGCTCGATCGCCTTGTCCAGCGCCTCCAGCAGCCCttt < 1:215065/94‑1 (MQ=38) ccttttCGCGGGCTTGCCCGCG‑AAAGGGCCCGTGCGGCTAGCCAATATGCTGCTGATCCAGCTCGATCGCCTTGTCCAGCGCCTCCAGCAGCCCttt > 2:215065/4‑97 (MQ=38) ccttttCGCGGGCTTGCCCGCG‑AAAGGGCCCGTGCGGCTAGCCAATATGCTGCTGATCCAGCTCGATCGCCTTGTCCAGCGCCTCCAGCAGCCCTTTGCGCACTTTCAGCTTGGTGTTCTTGTGCGCCAGCATGTTCAGCTTCTTCAGCt > 1:835449/4‑150 (MQ=255) ccttttCGCGGGCTTGCCCGCG‑AAAGGGCCCGTGCGGCTAGCCAATATGCTGCTGATCCAGCTCGATCGCCTTGTCCAGCGCCTCCAGCAGCCCTTTGCGCACTTTCAGCTTGGTGTTCTTGTGCGCCAGCATGTTCAGCTTCTTCAGCt > 1:2836/4‑150 (MQ=255) cttttCGCGGGCTTGCCCGCG‑AAAGGGCCCGTGCGGCTAGCCAATATGCTGCTGATCCAGCTCGATCGCCTTGTCCAGCGCCTCCAGCAGCCCTTTGCGCACTTTCAGCTTGGTGTTCTTGTGCGCCAGCATGTTCAGCTTCTTCAGCTc > 2:364186/3‑150 (MQ=255) ttttCGCGGGCTTGCCCGCG‑AAAGGGCCCGTGCGGCTAGCCAATATGCTGCTGATCCAGCTCGATCGCCTTGTCCAGCGCCTCCAGCAGCCCTTTGCGCACTTTCAGCTTGGTGTTCTTGTGCGCCAGCATGTTCAGCTTCTTCAGCTcc < 2:835449/149‑1 (MQ=255) gggCAAGCCCGCGAAAAGGGCCCGTGCGGCTAGCCAATATGCTGCTGATCCAGCTCGATCGCCTTGTCCAGCGCCTCCAGCAGCCCTTTGCGCACTTTCAGCTTGGTGTTCTTGTGCGCCAGCATGTTCAGCTTCTTCAGCTCCCGCGCt > 2:523377/1‑150 (MQ=255) | AACGGCAAGAAAATGCAGCCCCAGCAGGAACATACGCAATGAATAAAGCATGGTACGACTCACACCAGACGGTCGCGGGGCAGTGTACGGGTGTGCACTGGCTGGGGCAAACCTTGGTGCAGGCCTGTTACGGCCCTTTCGCGGGCAAGCCCGCGAAAAGGGCCCGTGCGGCTAGCCAATATGCTGCTGATCCAGCTCGATCGCCTTGTCCAGCGCCTCCAGCAGCCCTTTGCGCACTTTCAGCTTGGTGTTCTTGTGCGCCAGCATGTTCAGCTTCTTCAGCTCCCGCGCT > NC_002947/2068048‑2068339 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |