Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,097,500 | C→T | 7.3% | P135L (CCG→CTG) | gpx → | hydroperoxy fatty acid reductase Gpx1 |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,097,500 | 0 | C | T | 7.3% | 149.3 / 3.0 | 55 | P135L (CCG→CTG) | gpx | hydroperoxy fatty acid reductase Gpx1 |
Reads supporting (aligned to +/- strand): ref base C (26/25); new base T (2/2); total (28/27) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.20e-01 |
TCGGCGTGAGTTTTCCGCTGTTTCGCAAGGTCGAGGTCAACGGCCCGGGCGCTCACCCTCTGTTCGTCGAACTCAAGCAACGCGCCCCGGGTATTTTGGGTAGCCAGAAGATCAAGTGGAACTTCACCAAGTTTCTGGTCGACCCGGCCAGTGGCCAGGTCAAGCGCTATGCCCCCACCACCAAGCCACAGGCCCTGGAGGCGGACATCGAGCGTTTGCTCAGCCGCTGAAGGGCACCCAATGGTCGACCAGGGCCAGTAGCTCTTCGCGGCGGAATGGCTTGGCCAGGTAG > NC_002947/2097356‑2097647 | tCGGCGTGAGTTTTCCGCTGTTTCGCAAGGTCGAGGTCAACGGCCCGGGCGCTCACCCTCTGTTCGTCGAACTCAAGCAACGCGCCCCGGGTATTTTGGGTAGCCAGAAGATCAAGTGGAACTTCACCAAGTTTCTGGTCGACCCGGCCa > 2:410994/1‑150 (MQ=255) gCGTGAGTTTTCCGCTGTTTCGCAAGGTCGAGGTCAACGGCCCGGGCGCTCACCCTCTGTTCGTCGAACTCAAGCAACGCGCCCCGGGTATTTTGGGTAGCCAGAAGATCAAGTGGAACTTCACCAAGTTTCTGGTCGACCCGGCCAGTg < 2:674922/150‑1 (MQ=255) cGCTGTTTCGCAAGGTCGAGGTCAACGGCCCGGGCGCTCACCCTCTGTTCGTCGAACTCAAGCAACGCGCCCCGGGTATTTTGGGTAGCCAGAAGATCAAGTGGAACTTCACCAAGTTTCTGGTCGACCCGGCCAGTGGCCAGGTCAAgc > 1:1025958/1‑150 (MQ=255) tCGCAAGGTCGAGGTCAACGGCCCGGGCGCTCACCCTCTGTTCGTCGAACTCAAGCAACGCGCCCCGGGTATTTTGGGTAGCCAGAAGATCAAGTGGAACTTCACCAAGTTTCTGGTCGACCCGGCCAGTGGCCAGGTCAAGCGCTATGc < 2:52938/150‑1 (MQ=255) gCAAGGTCGAGGTCAACGGCCCGGGCGCTCACCCTCTGTTCGTCGAACTCAAGCAACGCGCCCCGGGTATTTTGGGTAGCCAGAAGATCAAGTGGAACTTCACCAAGTTTCTGGTCGACCCGGCCAGTGGCCAGGTCAAGCGCTATGccc > 1:412424/1‑150 (MQ=255) gtggAGGTAAACGGCCCGGGCGCTCACGCTCTGTTAGTCGAACTCAAGAAACGCGGCCCGGGTATTTTGGGTAGCCAGAAGATCAAGTGGAACTTCACCAAGTTTCTGGTTGACCCGGCCAGTGGCCAGGTAAAGCGCTATGCCGccagc > 2:51167/4‑148 (MQ=255) ggTCAACGGCCCGGGCGCTCACCCTCTGTTCGTCGAACTCAAGCAACGCGCCCCGGGTATTTTGGGTAGCCAGAAGATCAAGTGGAACTTCACCAAGTTTCTGGTCGACCCGGCCAGTGGCCAGGTCAAGCGCTATGCCCCCACCACCaa > 1:106139/1‑150 (MQ=255) aaCGGCCCGGGCGCTCACCCTCTGTTCGTCGAACTCAAGCAACGCGCCCCGGGTATTTTGGGTAGCCAGAAGATCAAGTGGAACTTCACCAAGTTTCTGGTCGACCCGGCCAGTGGCCAGGt > 2:1109557/1‑122 (MQ=255) aaCGGCCCGGGCGCTCACCCTCTGTTCGTCGAACTCAAGCAACGCGCCCCGGGTATTTTGGGTAGCCAGAAGATCAAGTGGAACTTCACCAAGTTTCTGGTCGACCCGGCCAGTGGCCAGGt < 1:1109557/122‑1 (MQ=255) aaCGGCCCGGGCGCTCACCCTCTGTTCGTCGAACTCAAGCAACGCGCCCCGGGTATTTTGGGTAGCCAGAAGATCAAGTGGAACTTCACCAAGTTTCTGGTCGACCCGGCCAGTGGCCAGGTCAAGCGCTATGCCCCCACCACCAAGCca > 2:593518/1‑150 (MQ=255) aCGGCCCGGGCGCTCACCCTCTGTTCGTCGAACTCAAGCAACGCGCCCCGGGTATTTTGGGTAGCCAGAAGATCAAGTGGAACTTCACCAAGTTTCTGGTCGACCCGGCCAGTGGCCAGGTCAAGCGCTATGCCCCCACCACCAAGCcac < 1:410994/150‑1 (MQ=255) cGGGCGCTCACCCTCTGTTCGTCGAACTCAAGCAACGCGCCCCGGGTATTTTGGGTAGCCAGAAGATCAAGTGGAACTTCACCAAGTTTCTGGTCGACCCGGCCAGTGGCCAGGTCAAgc > 2:223537/1‑120 (MQ=255) cGGGCGCTCACCCTCTGTTCGTCGAACTCAAGCAACGCGCCCCGGGTATTTTGGGTAGCCAGAAGATCAAGTGGAACTTCACCAAGTTTCTGGTCGACCCGGCCAGTGGCCAGGTCAAgc < 1:223537/120‑1 (MQ=255) gggCGCTCACCCTCTGTTCGTCGAACTCAAGCAACGCGCCCCGGGTATTTTGGGTAGCCAGAAGATCAAGTGGAACTTCACCAAGTTTCTGGTCGACCCGGCCAGTGGCCAGGTCAAGCGCTATGCCCCCACCACCAAGCCACAGGCCCt < 2:547480/150‑1 (MQ=255) cgcTCACCCTCTGTTCGTCGAACTCAAGCAACGCGCCCCGGGTATTTTGGGTAGCCAGAAGATCAAGTGGAACTTCACCAAGTTTCTGGTCGACCCGGCCAGTGGCCAGGTCAAGCGCTATGCCCCCACCACCAAGCCACAGGCCCTGGa < 1:303211/150‑1 (MQ=255) tCACCCTCTGTTCGTCGAACTCAAGCAACGCGCCCCGGGTATTTTGGGTAGCCAGAAGATCAAGTGGAACTTCACCAAGTTTCTGGTCGACCCGGCCAGTCGCCAGGTCAAGCGCTATGCCCCCACCACCAAGCCACAGGCCCTGGAGGc > 1:1055618/1‑150 (MQ=255) aCCCTCTGTTCGTCGAACTCAAGCAACGCGCCCCGGCTATTTTGGGTAGCCAGCAGATCAAGTGGAACTTCACCAAGTTTCTGGTCGACCCGGCCAGTGGCCAGGTCAAGCGCTATGCCCCCACCACCAAGCCACAGGCCCTGGAGGCgg < 1:126031/150‑1 (MQ=255) cccTCTGTTCGTCGAACTCAAGCAACGCGCCCCGGGTATTTTGGGTAGCCAGAAGATCAAGTGGAACTTCACCAAGTTTCTGGTCGACCCGGCCAGTGGCCAGGTCAAGCGCTATGCCCccaccac < 2:853758/126‑1 (MQ=255) cccTCTGTTCGTCGAACTCAAGCAACGCGCCCCGGGTATTTTGGGTAGCCAGAAGATCAAGTGGAACTTCACCAAGTTTCTGGTCGACCCGGCCAGTGGCCAGGTCAAGCGCTATGCCCccaccac > 1:853758/1‑126 (MQ=255) ccTCTGTTCGTCGAACTCAAGCAACGCGCCCCGGGTATTTTGGGTAGCCAGAAGATCAAGTGGAACTTCACCAAGTTTCTGGTCGACCCGGCCAGTGGCCAGGTCAAGCGCTATGCCCCCACCACCAAGCCACAGGCCCTGGAGGCGGAc > 2:59557/1‑150 (MQ=255) tcgaactcgaacAACGCGCCCCGGGTATTTTGGGTAGCCAGAAGATCAAGTGGAACTTCACCAAGTTTCTGGTTGACCCGGCCAGTGGCCAGGTCAAGCGCTATGCCCCCACCACCAAGCCACAGGCCCTGGATGCGGACATCGAGCGtt < 1:51167/150‑1 (MQ=255) tcgAACTCAAGCAACGCGCCCCGGGTATTTTGGGTAGCCAGAAGATCAAGTGGAACTTCACCAAGTTTCTGGTCGACCCGGCCAGTGGCCAGGTCAAGCGCTATGCCCCCACCACCAAGCCACAGGCCCTGGAGGCGGACATCGAGCGtt < 2:1025958/150‑1 (MQ=255) cTCAAGCAACGCGCCCCGGGTATTTTGGGTAGCCAGAAGATCAAGTGGCACTTCACCAAGTTTCTGGTCGACCCGGCCAGTGGCCAGGTCAAGCGCTATGCCCCCACCACCAAGCCACAGGCCCTGGAGGCGGACATCGAGCGTTTGCTc < 1:671022/150‑1 (MQ=255) tCAAGCAACGCGCCCCGGGTATTTTGGGTAGCCAGAAGATCAAGTGGAACTTCACCAAGTTTCTGGTCGACCCGGCCAGTGGCCAGGTCAAGCGCTATGCCCCCACCACCAAGCCACAGGCCCTGGAGGCGGACATCGAGCGTTTGCTCa > 1:1051293/1‑150 (MQ=255) cgcCCCGGGTATTTTGGGTAGCCAGAAGATCAAGTGGAACTTCACCAAGTTTCTGGTCGACCCGGCCAGTGGCCAGGTCAAGCGCTATGCCCCCACCACCAAGCCACAGGCCCTGGAGGCGGACATCGAGCGTTTGCTCAGCCGCTGAAg < 2:1055618/150‑1 (MQ=255) ccccGGGTATTTTGGGTAGCCAGAAGATCAAGTGGAACTTCACCAAGTTTCTGGTCGACCCGGCCAGTGGCCAGGTCAAGCGCTATGCCCCCACCACCAAGCCACAGGCCCTGGAGGCGGACATCGAGCGTTTGCTCAGCCGCTGAAggg < 2:1051293/150‑1 (MQ=255) cccGGGTATTTTGGGTAGCCAGAAGATCAAGTGGAACTTCACCAAGTTTCTGGTCGACCCGGCCAGTGGCCAGGTCAAGCGCTATGCCCCCACCACCAAGCCACAGGCCCTGGAGTCGGACATCGAGCGTTTGc < 2:1077157/134‑1 (MQ=255) cccGGGTATTTTGGGTAGCCAGAAGATCAAGTGGAACTTCACCAAGTTTCTGGTCGACCCGGCCAGTGGCCAGGTCAAGCGCTATGCCCCCACCACCAAGCCACAGGCCCTGGAGTCGGACATCGAGCGTTTGc > 1:1077157/1‑134 (MQ=255) ttttGGGTAGCCAGAAGATCAAGTGGAACTTCACCAAGTTTCTGGTCGACCCGGCCAGTGGCCAGGTCAAGCGCTATGCCCCCACCACCAAGCCACAGGCCCTGGAGGCGGACATCGAGCGTTTGCTCAGCCGCTGAAGGGGACTTAATg < 2:566011/150‑1 (MQ=255) gTAGCCAGAAGATCAAGTGGAACTTCACCAAGTTTCTGGTCGACCCGGCCAGTGGCCAGGTCAAGCGCTATGCCCCCACCACCAAGCCACAGGccc > 1:1096366/1‑96 (MQ=255) gTAGCCAGAAGATCAAGTGGAACTTCACCAAGTTTCTGGTCGACCCGGCCAGTGGCCAGGTCAAGCGCTATGCCCCCACCACCAAGCCACAGGccc < 2:1096366/96‑1 (MQ=255) agaagaTCAAGTGGAACTTCACCAAGTTTCTGGTCGACCCGGCCAGTGGCCAGGTCAAGCGCTATGCCCCCACCACCAAGCCACAGGCCCTGGAGGCGGACATCGAGCGTTTGCTCAGCCGCTGAAGGGCACCCAATGGTCGACCAGGGc > 2:759402/1‑150 (MQ=255) gaagaTCAAGTGGAACTTCACCAAGTTTCTGGTCGACCCGGCCAGTGGCCAGGTCAAGCGCTATGCCCCCACCACCAAGCCACAGGCCCTGGAGGCGGACATCGAGCGTTTGCTCAGCCGCTGAAGGGCACCCAATGGTCGAc > 1:839505/1‑143 (MQ=255) gaagaTCAAGTGGAACTTCACCAAGTTTCTGGTCGACCCGGCCAGTGGCCAGGTCAAGCGCTATGCCCCCACCACCAAGCCACAGGCCCTGGAGGCGGACATCGAGCGTTTGCTCAGCCGCTGAAGGGCACCCAATGGTCGAc < 2:839505/143‑1 (MQ=255) tCAAGTGGAACTTCACCAAGTTTCTGGGCGACCCGGCCAGTGGCCAGGTCAAGCGCTATGCCCCCACCACCAAGCCACAGGCCCTGGAGGCGGACATCGAGCGTTTGCTCAGCCGCTGAAGGGCACCCAATGGTCGACCAGGGCCAGTAg < 1:498180/150‑1 (MQ=255) aaGTGGAACTTCACCAAGTTTCTGGTCGACCCGGCCAGTGGCCAGGTCAAGCGCTATGCCCCCACCACCAAGCCAGAGGCCCTGGAGGCGGACATCGAGCATTTCCTAAGCCGCTAAGTGTCACCCAATGGTCGACCAGGGCCAGTAGct > 1:269935/1‑150 (MQ=255) gTGGAACTTCACCAAGTTTCTGGTCGACCCGGCCAGTGGCCAGGTCAAGCGCTATGCCCCCACCACCAAGCCACAGGCCCTGGAGGCGGACATCGAGCGTTTGCTCAGCCGCTGAAGGGCACCCAATGGTCGACCAGGGCCa > 2:545692/1‑142 (MQ=255) gTGGAACTTCACCAAGTTTCTGGTCGACCCGGCCAGTGGCCAGGTCAAGCGCTATGCCCCCACCACCAAGCCACAGGCCCTGGAGGCGGACATCGAGCGTTTGCTCAGCCGCTGAAGGGCACCCAATGGTCGACCAGGGCCa < 1:545692/142‑1 (MQ=255) tGGAACTTCACCAAGTTTCTGGTCGACCCGGCCAGTGGCCAGGTCAAGCGCTATGCCCCCACCACCAAGCCACAGGCCCTGGAGGCGGACATCGCGCGTTTGCTCAGCCGCTGACGGGCACCCAATAGTCGACCAGCGCCAGTAGGTCtt > 2:188637/1‑150 (MQ=255) tGGAACTTCACCAAGTTTCTGGTCGACCCGGCCAGTGGCCAGGTCAAGCGCTATGCCCCCACCACCAAGCCACAGGCCCTGGAGGCGGACATCGAGCGTTTGCTCAGCCGCTGAAGGGCACCCAATGGTCGACCAGGGCCAGTAGCTCtt > 2:62687/1‑150 (MQ=255) aCTTCACCAAGTTTCTGGTCGACCCGGCCAGTGGCCAGGTCAAGCGCTATGCCCCCACCACCAAGCCACAGGCCCTGGAGGCGGATATCGAGCGTTTGCTCAGCCGCTGAAGGGCACCCAATGGTCGACCAGGGCCAGTAGCTCTTcgcg > 2:1165714/1‑150 (MQ=255) cAAGTTTCTGGTCGACCCGGCCAGTGGCCAGGTCAAGCGCTATGCCCCCACCACCAAGCCACAGGCCCTGGAGGCGGACATCGAGCGTTTGCTCAGCCGCTGAAGGGCACCCAATGGTCGACCAGGGCCAGTAGCTCTTCGCGGCGGAAt > 2:93311/1‑150 (MQ=255) aaGTTTCTGGTCGACCCGGCCAGTGGCCAGGTCAAGCGCTATGCCCCCACCACCAAGCCACAGGCCCTGGAGGCGGACATCGAGCGTTTGCTCAGCCGCTGAAGGGCACCCAATGGTCGACCAGGGCCAGTAGCTCTTCGCGGCGGAATg > 2:929176/1‑150 (MQ=255) gTTTCTGGTCGACCCGGCCAGTGGCCAGGTCAAGCGCTATGCCCCCACCACCAAGCCACAGGCCCTGGAGGCGGACATCGAGCGTTTGCTCAGCCGCTGAAGGGCACCCAATGGTCGACCAGGGCCAGTAGCTCTTCGCGGCGGAATGGc < 1:93311/150‑1 (MQ=255) tCTGGTCGACCCGGCCAGTGGCCAGGTCAAGCGCTATGCCCCCACCACCAAGCCACAGGCCCTGGAGGCGGACATCGAGCGTTTGCTCAGCCGCTGAAGGGCACCCAATGGTCGACCAGGGCCAGTAGCTCTTCGCGGCGGAATGGCTTg < 2:106139/150‑1 (MQ=255) gTCGACCCGGCCAGTGGCCAGGTCAAGCGCTATGCCCCCACCACCAAGCCACAGGCCCTGGAGGCGGACATCGAGCGTTTGCTCAGCCGCTGAAGGGCACCCAATGGTCGACCAGGGCCAGTAGCTCTTCGCGGCGGAATGGCTTGGCCa > 2:717754/1‑150 (MQ=255) gTCGACCCGGCCAGTGGCCAGGTCAAGCGCTATGCCCCCACCACCAAGCCACAGGCCCTGGAGGCGGACATCGAGCGTTTGCTCAGCCGCTGAAGGGCACCCAATGGTCGACCAGGGCCAGTAGCTCTTCGCGGCGGAATGGCTTGGCCa < 1:593518/150‑1 (MQ=255) ttgACCTGGCCACTGGCCGGGTCAAGCGCTATGCCCCCACCACCAAGCCACAGGCCCTGGAGGCGGACATCGAGCGtt < 1:509959/76‑1 (MQ=38) ttgACCTGGCCACTGGCCGGGTCAAGCGCTATGCCCCCACCACCAAGCCACAGGCCCTGGAGGCGGACATCGAGCGtt > 2:509959/3‑78 (MQ=38) tCGACCCGGCCAGTGGCCAGGTCAAGCGCTATGCCCCCACCACCAAGCCACAGGCCCTGGAGGCGGACATCGAGCGTTTGCTCAGCCGCTGAAGGGCACCCAATGGTCGACCAGGGCCa < 1:119310/119‑1 (MQ=255) tCGACCCGGCCAGTGGCCAGGTCAAGCGCTATGCCCCCACCACCAAGCCACAGGCCCTGGAGGCGGACATCGAGCGTTTGCTCAGCCGCTGAAGGGCACCCAATGGTCGACCAGGGCCa > 2:119310/1‑119 (MQ=255) tgACCTGGCCACTGGCCGGGTCAAGCGCTATGCCCCCACCACCAAGCCACAGGCCCTGGAGGCGGACATCGAGCGTTTGCTCAGCCGCt > 1:945432/2‑89 (MQ=255) tgACCTGGCCACTGGCCGGGTCAAGCGCTATGCCCCCACCACCAAGCCACAGGCCCTGGAGGCGGACATCGAGCGTTTGCTCAGCCGCt < 2:945432/88‑1 (MQ=255) gACCCGGCCAGTGGCCAGGTCAAGCGCTATGCCCCCACCACCAAGCCACAGGCCCTGGAGGCGGACATCGAGCGTTTGCTCAGCCGCTGAAGGGCACCCAATGGTCGACCAGGGCCAGTAGCTCTTCgcggc < 1:468239/132‑1 (MQ=255) gACCCGGCCAGTGGCCAGGTCAAGCGCTATGCCCCCACCACCAAGCCACAGGCCCTGGAGGCGGACATCGAGCGTTTGCTCAGCCGCTGAAGGGCACCCAATGGTCGACCAGGGCCAGTAGCTCTTCgcggc > 2:468239/1‑132 (MQ=255) cccGGCCAGTGGCCAGGTCAAGCGCTATGCCCCCACCACCAAGCCACAGGCCCTGGAGGCGGACATCGAGCGTTTGCTCAGCCGCTGAAGGGCACCCAATGGTCGACCAGGGCCAGTAGCTCTTCGCGGCGGAATGGCTTGGCCAGGTAg < 1:717754/150‑1 (MQ=255) | TCGGCGTGAGTTTTCCGCTGTTTCGCAAGGTCGAGGTCAACGGCCCGGGCGCTCACCCTCTGTTCGTCGAACTCAAGCAACGCGCCCCGGGTATTTTGGGTAGCCAGAAGATCAAGTGGAACTTCACCAAGTTTCTGGTCGACCCGGCCAGTGGCCAGGTCAAGCGCTATGCCCCCACCACCAAGCCACAGGCCCTGGAGGCGGACATCGAGCGTTTGCTCAGCCGCTGAAGGGCACCCAATGGTCGACCAGGGCCAGTAGCTCTTCGCGGCGGAATGGCTTGGCCAGGTAG > NC_002947/2097356‑2097647 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |