Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,468,304 | G→C | 7.9% | intergenic (‑25/+98) | PP_2161 ← / ← PP_2162 | hypothetical protein/phosphonoacetaldehyde phosphonohydrolase‑like protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,468,304 | 0 | G | C | 7.9% | 152.8 / 4.6 | 51 | intergenic (‑25/+98) | PP_2161/PP_2162 | hypothetical protein/phosphonoacetaldehyde phosphonohydrolase‑like protein |
Reads supporting (aligned to +/- strand): ref base G (24/23); new base C (2/2); total (26/25) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.49e-01 |
GTTGCGCCTCGATCTGGCGCGCCTCTTCGTGCAGGGCGGCCAGCTCTTCTTCCGAAAGCGGTACGTTGCGGTCCAGTTGCTCGCGCAAGCTGTTCAGGCGCTCTTGCAATTCGCGGGCAGGCATTGGCTATTCTCCATCAATGGCTTGGCAAGCCATGGACCTCTGCGACGTGGCAAAGGTTCTGGCCTGTCTTCAGGGTAATCTACCTGCTGGCGATTTGCATGATCCGCGTCAAGACGGCTGTATCAGGGTTTTTCACCCTTGCGCCGGCGCTGGGCGATGTCCACCAGGCAG > NC_002947/2468156‑2468450 | gTTGCGCCTCGATCTGGCGCGCCTCTTCGTGCAGGGCGGCCAGCTCTTCTTCCGAAAGCGGTACGTTGCGGTCCAGTTGCTCGCGCAAGCTGTTCAGGCGCTCTTGCAATTCGCGGGCAGGCATTGGCTATTCTCCATCAATGGCTTGGc < 1:999571/150‑1 (MQ=255) tGCGCCTCGATCTGGCGCGCCTCTTCGTGCAGGGCGGCCAGCTCTTCTTCCGAAAGCGGTACGTTGCGGTCCAGTTGCTCGCGCAAGCTGTTCAGGCGCTCTTGCAATTCGCGGGCAGGCATTGGCTATTCTCCATCAATGGCTTGGCaa < 2:1145768/150‑1 (MQ=255) gcCTCGATCTGGCGCGCCTCTTCGTGCAGGGCGGCCAGCTCTTCTTCCGAAAGCGGTACGTTGCGGTCCAGTTGCTCGCGCAAGCTGTTCAGGCGCTCTTGCAATTCGCGGGCAGGCATTGGCTATTCTCCATCAATGGCTTGGCAAGcc > 1:686176/1‑150 (MQ=255) aTCTGGCGCGCCTCTTCGTGCAGGGCGGCCAGCTCTTCTTCCGAAAGCGGTACGTTGCGGTCCAGTTGCTCGCGCAAGCTGTTCAGGCGCTCTTGCAATTCGCGGGCAGGCATTGGCTATTCTCCATCAATGGCTTGGCAAGCCATGGAc < 1:155242/150‑1 (MQ=255) tCTGGCGCGCCTCTTCGTGCAGGGCGGCCAGCTCTTCTTCCGAAAGCGGTACGTTGCGGTCCAGTTGCTCGCGCAAGCTGTTCAGGCGCTCTTGCAATTCGCGGGCAGGCATTGGCTATTCTCCATCAATGGCTTGCCAAGCCAttgatg < 2:86429/150‑6 (MQ=255) tGGCGCGCCTCTTCGTGCAGGGCGGCCAGCTCTTCTTCCGAAAGCGGTACGTTGCGGTCCAGTTGCTCGCGCAAGCTGTTCAGGCGCTCTTGCAATTCGCGGGCAGGCATTGGCTATTCTCCATCAATGGCTTGCCAAGCCAttgatgga < 1:153608/150‑8 (MQ=255) ccTCTTCGTGCAGGGCGGCCAGCTCTTCTTCCGAAAGCGGTACGTTGCGGTCCAGTTGCTCGCGCAAGCTGTTCAGGCGCTCTTGCAATTCGCGGGCAGGCATTGGCTATTCTCCATCAATGGCTTGGCAAGCCATGGACCTCTGCGACg > 1:93243/1‑150 (MQ=255) ctctTCGTGCAGGGCGGCCAGCTCTTCTTCCGAAAGCGGTACGTTGCGGTCCAGTTGCTCGCGCAAGCTGTTCAGGCGCTCTTGCAATTCGCGGGCAGGCATTGGCTATTCTCCATCAATGGCTTGGCAAGCCATGGACCTCTGCGACGt > 2:887260/1‑150 (MQ=255) gggCGGCCAGCTCTTCTTCCGAAAGCGGTACGTTGCGGTCCAGTTGCTCGCGCAAGCTGTTCAGGCGCTCTTGCAATTCGCGGGCAGGCATTGGCTATTCTCCATCAATGGCTTGGCAAGCCATGGACCTCTGCGACGTGGCAAAGGTTc < 1:887260/150‑1 (MQ=255) tcCGAAAGCGGTACGTTGCGGTCCAGTTGCTCGCGCAAGCTGTTCAGGCGCTCTTGCAATTCGCGGGCAGGCATTGGCTATTCTCCATCAATGGCTTGGCAAGCCATGGACCTCTGCGACGTGGCAAAGGTTCTGGCCTGTCTTCAGGGt < 2:65173/150‑1 (MQ=255) gAAAGCGGTACGTTGCGGTCCAGTTGCTCGCGCAAGCTGTTCAGGCGCTCTTGCAATTCGCGGGCAGGCATTGGCTATTCTCCATCAATGGCTTGGCAAGCCATGGACCTCTGCGACGTGGCAAAGGTTCTg < 1:1123754/132‑1 (MQ=255) gAAAGCGGTACGTTGCGGTCCAGTTGCTCGCGCAAGCTGTTCAGGCGCTCTTGCAATTCGCGGGCAGGCATTGGCTATTCTCCATCAATGGCTTGGCAAGCCATGGACCTCTGCGACGTGGCAAAGGTTCTg > 2:1123754/1‑132 (MQ=255) gCGGTACGTTGCGGTCCAGTTGCTCGCGCAAGCTGTTCAGGCGCTCTTGCAATTCGCGGGCAGGCATTGGCTATTCTCCATCAATGGCTTGGCAAGCCATGGACCTCTTCGACGTGGCAAAGGTTCTGGCCTGTCTTCAGGGTAATCTAc < 2:686176/150‑1 (MQ=255) gTCCAGTTGCTCGCGCAAGCTGTTCAGGCGCTCTTGCAATTCGCGGGCAGGCATTGGCTATTCTCCATCAATGGCTTGGCAAGCCATGGACCTCTGCGACGTGGCAAAGGTTCTGGCCTGTCTTCAGGGTAATCTACCTGCTGGCGAttt < 2:468579/150‑1 (MQ=255) acccAGTACCTCGCTCCAGCCGTGCGGTCGCTCTTGCAATTCGCGGGCAGGCATTGGCTATTCTCCAGCTTTTGCTTGGCAAGCCATGGACCTCTGCGACGTGGCAAAGGTTCTGGCCTGTCTTCAGGGTAATCTACCTGCTGGCGAttt < 1:379984/148‑1 (MQ=255) cAGTTGCTCGCGCAAGCTGTTCAGGCGCTCTTGCAATTCGCGGGCAGGCATTGGCTATTCTCCATCAATGGCTTGGCAAGCCATGGACCTCTGCGACGTGGCAAAGGTTCTGGCCTGTCTTCAGGGTAATCTACCTGCTGGCGATTTGCa > 1:1082431/1‑150 (MQ=255) tCGCGCAAGCTGTTCAGGCGCTCTTGCAATTCGCGGGCAGGCATTGGCTATTCTCCATCAATGGCTTGGCAAGCCATGGACCTCTGCGACGTGGCAAAGGTTCTGGCCTGTCTTCAGGGTAATCTACCTGCTGGCGATTTGCATGATCcg > 2:664904/1‑150 (MQ=255) cgcAAGCTGTTCAGGCGCTCTTGCAATTCGCGGGCAGGCATTGGCTATTCTCCATCAATGGCTTGGCAAGCCATGGACCTCTGCGACGTGGCAAAGGTTCTGGCCTGTCTTCAGGGTAATCTACCTGCTGGCGATTTGCATGATCCGCGt > 2:544922/1‑150 (MQ=255) gcAAGCTGTTCAGGCGCTCTTGCAATTCGCGGGCAGGCATTGGCTATTCTCCATCAATGGCTTGGCAAGCCATGGACCTCTGCGACGTGGCAAAGGTTCTGGCCTGTCTTCAgg > 2:936140/1‑114 (MQ=255) gcAAGCTGTTCAGGCGCTCTTGCAATTCGCGGGCAGGCATTGGCTATTCTCCATCAATGGCTTGGCAAGCCATGGACCTCTGCGACGTGGCAAAGGTTCTGGCCTGTCTTCAgg < 1:936140/114‑1 (MQ=255) ttCAGGCGCTCTTGCAATTCGCGGGCAGGCATTGGCTATTCTCCATCAATGGCTTGGCAAGCCATGGACCTCTGCGACGTGGCAAAGGTTCTGGCCTGTCTTCAGGGTAATCTACCTGCTGGCGATTTGCATGATCCGCGTCAAGACGGc > 2:957110/1‑150 (MQ=255) aGGCGCTCTTGCAATTCGCGGGCAGGAATTGGCTATTCTCCATCAATGGCTTGGCAAGCCATGGACCTCTGCGACGTGGCAAAGGTTCTGGCCTGTCTTCAGGGTAATCTACCTGCTGGCGATTTGCATGATCCGCGTCAAGACGGCTGt > 1:1123315/1‑150 (MQ=255) tGCAATTCGCGGGCAGGCATTGGCTATTCTCCATCAATGGCTTGGCAAGCCATGGACCTCTGCGACGTGGCAAAGGTTCTGGCCTGTCTTCAGGGTAATCTACCTGCTGGCGATTTGCATGATCCGCGTCAAGACGGCTGTATCAGGGtt < 1:664904/150‑1 (MQ=255) gCAATTCGCGGGCAGGCATTGGCTATTCTCCATCAATGGCTTGGCAAGCCATGGACCTCTGCGACGTGGCAAAGGTTCTGGCCTGTCTTCAGGGTAATCTACCTGCTGGCGATTTGCATGATCCGCGTCAAGACGGCTGTATCa < 2:1175248/144‑1 (MQ=255) gCAATTCGCGGGCAGGCATTGGCTATTCTCCATCAATGGCTTGGCAAGCCATGGACCTCTGCGACGTGGCAAAGGTTCTGGCCTGTCTTCAGGGTAATCTACCTGCTGGCGATTTGCATGATCCGCGTCAAGACGGCTGTATCa > 1:1175248/1‑144 (MQ=255) aaTTCGCGGGCAGGCATTGGCTATTCTCCATCAATGGCTTGGCAAGCCATGGACCTCTGCGACGTGGCAAAGGTTCTGGCCTGTCTTCAggg < 1:618780/92‑1 (MQ=255) aaTTCGCGGGCAGGCATTGGCTATTCTCCATCAATGGCTTGGCAAGCCATGGACCTCTGCGACGTGGCAAAGGTTCTGGCCTGTCTTCAggg < 1:618409/92‑1 (MQ=255) aaTTCGCGGGCAGGCATGGGCTATTCTCCATCAATGGCTTGGCAAGCCATGGACCTCTGCGACGTGGCAAAGGTTCTGGCCTGTCTTCAggg > 2:618780/1‑92 (MQ=255) aaTTCGCGGGCAGGCATGGGCTATTCTCCATCAATGGCTTGGCAAGCCATGGACCTCTGCGACGTGGCAAAGGTTCTGGCCTGTCTTCAggg > 2:618409/1‑92 (MQ=255) cgcgGGCAGGCATTGGCTATTCTCCATCAATGGCTTGGCAAGCCATGGACCTCTGCGACGTGGCAAAGGTTCTGGCCTGTCTTCAGGGTAATCTACCTGCTGGCGATTTGTATGATCCGCGTCAAGACGGCTGTATCAGGGTTTTTCAcc < 1:399921/150‑1 (MQ=255) cgcgGGCAGGCATTGGCTATTCTCCATCAATGGCTTGGCAAGCCATGGACCTCTGCGACGTGGCAAAGGTTCTGGCCTGTCTTCAGGGTAATCTACCTGCTGGCGATTTGCGTGATCCGCGTCAAGACGGCTGTATCAGGGTTTTTCAcc < 1:416567/150‑1 (MQ=255) gcgttGGCTATTCTCCATCAATGGCCTGGCAAGCCAGGGACCTCTGCGACGTGGCAAAGTTTCTGGCCTGTCTTAAGCGTAATCTACCTTCTAGCGATTTGCATGATCCCAGTCAAGACGGCTGTATCAGGGTTTTTCACCGTTGCGCCg > 2:496876/4‑150 (MQ=255) aTTGGCTATTCTCCATCAATGGCTTGGCAAGCCATGGACCTCTGCGACGTGGCAAAGGTTCTGGCCTGTCTTCAGGGTAATCTACCTGCTGGCGATTTGCATGATCCGCGTCAAGACGGCTGTATCAGCGTTTTTCACCCTTGCGCCGgc > 2:593761/1‑150 (MQ=255) gCTATTCTCCATCAATGGCTTGGCAAGCCATGGACCTCTGCGACGTGGCAAAGGTTCTGGCCTGTCTTCAGGGTAATCTACCTGCTGGCGATTTGCATGATCCGCGTCaa < 1:1097075/110‑1 (MQ=255) gCTATTCTCCATCAATGGCTTGGCAAGCCATGGACCTCTGCGACGTGGCAAAGGTTCTGGCCTGTCTTCAGGGTAATCTACCTGCTGGCGATTTGCATGATCCGCGTCaa > 2:1097075/1‑110 (MQ=255) tATTCTCCATCAATGGCTTGGCAAGCCATGGACCTCTGCGACGTGGCAAAGGTTCTGGCCTGTCTTCAGGGTAATCTACCTGCTGGCGATTTGCATGATCCGCGTCAAGACGGCTGTATCAGGGTTTTTCACCCTTGCGCCGGCGCTggg > 1:258430/1‑150 (MQ=255) tATTCTCCATCAATGGCTTGGCAAGACATGGACCTCTGCGACGTGGCAAAGGTTCTGGCCTGTCTTCAGGGTAATCTACCTGCTGGCGATTTGCATGATCCGCGTCAAGACGGCTGTATCAGGGTTTTTCACCCTTGCGCCGGCGCTggg > 1:1186604/1‑150 (MQ=255) ttCTCCATCAATGGCTTGGCAAGCCATGGACCTCTGCGACGTGGCAAAGGTTCTGGCCTGTCTTCAGGGTAATCTACCTGCTGGCGATTTGCATGATCcgc < 2:114742/101‑1 (MQ=255) ttCTCCATCAATGGCTTGGCAAGCCATGGACCTCTGCGACGTGGCAAAGGTTCTGGCCTGTCTTCAGGGTAATCTACCTGCTGGCGATTTGCATGATCcgc > 1:114742/1‑101 (MQ=255) tctcCATCAATGGCTTGGCAAGCCATGGACCTCTGCGACGTGGCAAAGGTTCTGGCCTGTCTTCAGGGTAATCTACCTGCTGGCGATTTGCATGATCCGCGTCAAGACGGCTGTATCAGGGTTTTTCACCCTTGCGCCGGCGCTGGGCGa < 2:1123315/150‑1 (MQ=255) tcCATCAATGGCTTGGCAAGCCATGGACCTCTGCGACGTGGCAAAGGTTCTGGCCTGTCTTCAGGGTAATCTACCTGCTGGCGATTTGCATGATCCGCGTCAAGACGGCTGTATCAGGGt < 2:382715/120‑1 (MQ=255) tcCATCAATGGCTTGGCAAGCCATGGACCTCTGCGACGTGGCAAAGGTTCTGGCCTGTCTTCAGGGTAATCTACCTGCTGGCGATTTGCATGATCCGCGTCAAGACGGCTGTATCAGGGt > 1:382715/1‑120 (MQ=255) tcCATCAATGGCTTGGCAAGCCATGGACCTCTGCGACGTGGCAAAGGTTCTGGCCTGTCTTCAGGGTAATCTACCTGCTGGCGATTTGCATGATCCGCGTCAAGACGGCTGTATCAGGGTTTTTCACCCTTGCGCCGgcgc < 2:398740/141‑1 (MQ=255) tcCATCAATGGCTTGGCAAGCCATGGACCTCTGCGACGTGGCAAAGGTTCTGGCCTGTCTTCAGGGTAATCTACCTGCTGGCGATTTGCATGATCCGCGTCAAGACGGCTGTATCAGGGTTTTTCACCCTTGCGCCGgcgc > 1:398740/1‑141 (MQ=255) tcCATCAATGGCTTGGCAAGCCATGGACCTCTGCGACGTGGCAAAGGTTCTGGCCTGTCTTCAGGGTAATCTACCTGCTGGCGATTTGCATGATCCGCGTCAAGACGGCTGTATCAGGGTTTTTCACCCTTGCGCCGGCGCTGGGCGATg > 2:157601/1‑150 (MQ=255) gtccaTGGCTTGCCAAGCCATGGACCTCTGCGACGTGGCAAAGGTTCTGGCCTGTCTTCAGGGTAATCTACCTGCTGGCGATTTGCATGATCCGCGTCAAGACGGCTGTATCAGGGTTTTTCACCCTTGCGCCGGCGCTGGGCGATGTcc > 2:1116069/5‑150 (MQ=255) aTGGCTTGGCAAGCCATGGACCTCTGCGACGTGGc < 2:766519/35‑1 (MQ=255) aTGGCTTGGCAAGCCATGGACCTCGACGACGTGGc > 1:766519/1‑35 (MQ=255) aTGGCTTGCCAAGCCATGGACCTCTGCGACGTGGCAAAGGTTCTGGCCTGTCTTCAGGGTAATCTACCTGCTGGCGATTTGCATGATCCGCGTCAAGACGGCTGTATCAGGGTTTTTCACCCTTGCGCCGGCGCTGGGCGATGTccacca > 1:37541/1‑150 (MQ=255) gCTTGGCAAGCCATGGACCTCTGCGACGTGGCAAAGGTTCTGGCCTGTCTTCAGGGTAATCTACCTGCTGGCGATTTGCATGATCCGCGTCAAGACGGCTGTATCAGGGTTTTTCACCCTTGCGCCGGCGCTGGGCGATGTCCACcaggc > 1:201160/1‑150 (MQ=255) ttGGCAAGCCATGGACCTCTGCGACGTGGCAAAGGTTCTGGCCTGTCTTCAGGGTAATCTACCTGCTGGCGATTTGCATGATCCGCGTCAAGACGGCTGTATCAGGGTTTTTCACCCTTGCGCCGGCGCTGGGCGATGTCCACcaggcag < 1:957110/150‑1 (MQ=255) gCAAGCCATGGACCTCTGCGACGTGGCAAAGGTTCTGGCCTGTCTTCAGGGTAATCTACCTGCTGGCGATTTGCATGAt > 1:939944/1‑79 (MQ=255) gCAAGCCATGGACCTCTGCGACGTGGCAAAGGTTCTGGCCTGTCTTCAGGGTAATCTACCTGCTGGCGATTTGCATGAt < 2:939944/79‑1 (MQ=255) | GTTGCGCCTCGATCTGGCGCGCCTCTTCGTGCAGGGCGGCCAGCTCTTCTTCCGAAAGCGGTACGTTGCGGTCCAGTTGCTCGCGCAAGCTGTTCAGGCGCTCTTGCAATTCGCGGGCAGGCATTGGCTATTCTCCATCAATGGCTTGGCAAGCCATGGACCTCTGCGACGTGGCAAAGGTTCTGGCCTGTCTTCAGGGTAATCTACCTGCTGGCGATTTGCATGATCCGCGTCAAGACGGCTGTATCAGGGTTTTTCACCCTTGCGCCGGCGCTGGGCGATGTCCACCAGGCAG > NC_002947/2468156‑2468450 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |