| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,500,618 | T→C | 8.2% | intergenic (+22/+3) | PP_2193 → / ← PP_2194 | ferric siderophore receptor/LysR family transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,500,618 | 0 | T | C | 8.2% | 139.3 / 3.1 | 49 | intergenic (+22/+3) | PP_2193/PP_2194 | ferric siderophore receptor/LysR family transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base T (22/23); new base C (2/2); total (24/25) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.96e-01 | |||||||||||
GCAGTACAGCACGGTATGGGGACAGCGTGCGACGTTGTTCTATTCGCCGACCTACGGGCCGGCGTATCTGTATGACTACCAGGGGCGTGGGCGGACCTATACGCTGAGCTGGAGCATGGCTTACTGATTGTGGTGGCCTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGCCAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATAACAGCCCCTCGGCCTCCCAGGCCTG > NC_002947/2500470‑2500767 | gCAGTACAGCACGGTATGGGGACAGCGTGCGACGTTGTTCTATTCGCCGACCTACGGGCCGGCGTATCTGTATGACTACCAGGGGCGTGGGCGGACCTATACGCTGAGCTGGAGCATGGCTTACTGATTGTGGTGGCCTGAACGGGCCTg > 2:1129115/1‑150 (MQ=255) tACAGCACGGTATGGGGACAGCGTAGGACGTTGTTCTATTCGCCGACCTACGGGCCGGCGTATCTGTATGACTACCAGGGGCGTGGGCGGACCTATACGCTGAGCTGGAGCATGGCTTACTGATTGTGGTGGCCTGAACGGGCCTGTTCa > 1:465716/1‑150 (MQ=255) aCAGCACGGTATGGGGACAGCGTGCGACGTTGTTCTATTCGCCGACCTACGGGCCGGCGTATCTGTATGACTACCAGGGGCGTGGGCGGACCTATACGCTGAGCTGGAGCATGGCTTACTGATTGTGGTGGCCTGAACGGGCCTGTTCAg < 1:69015/150‑1 (MQ=255) cAGCACGGTATGGGGACAGCGTGCGACGTTGTTCTATTCGCCGACCTACGGGCCGGCGTATCTGTATGACTACCAGGGGCGTGGGCGGACCTATACGCTGAGCTGGAGCATGGCTTACTGATTGTGGTGGCCTGAACGGGCCTGTTCAgg < 2:309293/150‑1 (MQ=255) aTGGGGACAGCGTGCGACGTTGTTCTATTCGCCGACCTACGGGCCGGCGTATCTGTATGACTACCAGGGGCGTGGGCGGACCTATACGCTGAGCTGGAGCATGGCTTACTGATTGTGGTGGCCTGAACAGGCCCGTTCAGGcc > 1:121745/1‑142 (MQ=255) aTGGGGACAGCGTGCGACGTTGTTCTATTCGCCGACCTACGGGCCGGCGTATCTGTATGACTACCAGGGGCGTGGGCGGACCTATACGCTGAGCTGGAGCATGGCTTACTGATTGTGGTGGCCTGAACAGGCCCGTTCAGGcc < 2:121745/143‑2 (MQ=255) gggACAGCGTGCGACGTTGTTCTATTCGCCGACCTACGGGCCGGCGTATCTGTATGACTACCAGGGGCGTGGGCGGACCTATACGCTGAGCTGGAGCATGGCTTACTGATTGTGGTGGCCTGAACGGGCCTGTTCAGGCAAACGCCGCCa > 1:42879/1‑150 (MQ=255) cAGCGTGCGACGTTGTTCTATTCGCCGACCTACGGGCCGGCGTATCTGTATGACTACCAGGGGCGTGGGCGGACCTATACGCTGAGCTGGAGCATGGCTTACTGATTGTGGTGGCCTGAACGGGCCTGTTCAg > 2:910108/1‑133 (MQ=255) cAGCGTGCGACGTTGTTCTATTCGCCGACCTACGGGCCGGCGTATCTGTATGACTACCAGGGGCGTGGGCGGACCTATACGCTGAGCTGGAGCATGGCTTACTGATTGTGGTGGCCTGAACGGGCCTGTTCAg < 1:910108/133‑1 (MQ=255) tGCGACGTTGTTCTATTCGCCGACCTACGGGCCGGCGTATCTGTATGACTACCAGGGGCGTGGGCGGACCTATACGCTGAGCTGGAGCATGGCTTACTGATTGTGGTGGCCTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCt > 1:848617/1‑150 (MQ=255) cGTTGTTCTATTCGCCGACCTACGGGCCGGCGTATCTGTATGACTACCAGGGGCGTGGGCGGACCTATACGCTGAGCTGGAGCATGGCTTACTGATTGTGGTGGCCTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCa > 1:364384/1‑150 (MQ=255) tATTCGCCGACCTACGGGCCGGCGTATCTGTATGACTACCAGGGGCGTGGGCGGACCTATACGCTGAGCTGGAGCATGGCTTACTGATTGTGGTGGCCTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATg > 1:391514/1‑150 (MQ=255) atacGCCGACCTACGGGCCGGCGTATCTGTATGACTACCAGGGGCGTGGGCGGACCTATACGCTGAGCTGGAGCATGGCTTACTGATTGTGGTGGCCTGAACGGGCCTGTTc > 1:463465/4‑112 (MQ=255) atacGCCGACCTACGGGCCGGCGTATCTGTATGACTACCAGGGGCGTGGGCGGACCTATACGCTGAGCTGGAGCATGGCTTACTGATTGTGGTGGCCTGAACGGGCCTGTTc < 2:463465/109‑1 (MQ=255) cGACCTACGGGCCGGCGTATCTGTATGACTACCAGGGGCGTGGGCGGACCTATACGCTGAGCTGGAGCATGGCTTACTGATTGTGGTGGCCTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGcc > 2:631767/1‑150 (MQ=255) cTACGGGCGGGCGTATCTGTATGACTACCAGGGGCGTGGGCGGACCTATACGCTGAGCTGGAGCATGGCTTGCTGATTGTGGTGGCCTGAACGGGCCTGTTAAGGCAAGAGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGc > 2:159097/1‑150 (MQ=255) cTACGGGCCGGCGTATCTGTATGACTACCAGGGGCGTGGGCGGACCTATACGCTGAGCTGGAGCATGGCTTACTGATTGTGGTGGCCTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGc < 1:772923/150‑1 (MQ=255) tACGGGCCGGCGTATCTGTATGACTACCAGGGGCGTGGGCGGACCTATACGCTGAGCTGGAGCATGGCTTACTGATTGTGGTGGCCTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGcc > 2:601684/1‑150 (MQ=255) ggCGTATCTGTATGACTACCAGGGGCGTGGGCGGACCTATACGCTGAGCTGGAGCATGGCTTACTGATTGTGGTGGCCTGAACGGGCCTGTTCAGGCAAACgccgcc > 1:1180262/1‑107 (MQ=255) ggCGTATCTGTATGACTACCAGGGGCGTGGGCGGACCTATACGCTGAGCTGGAGCATGGCTTACTGATTGTGGTGGCCTGAACGGGCCTGTTCAGGCAAACgccgcc < 2:1180262/107‑1 (MQ=255) ggCGTATCTGTATGACTACCAGGGGCGTGGGCGGACCTATACGCTGAGCTGGAGCATGGCTTACTGATTGTGGTGGCCTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCt < 1:890793/150‑1 (MQ=255) cGTATCTGTATGACTACCAGGGGCGTGGGCGGACCTATACGCTGAGCTGGAGCATGGCTTACTGATTGTGGTGGCCTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCtgt < 1:631767/150‑1 (MQ=255) gTATGACTACCAGGGGCGTGGGCGGACCTATACGCTGAGCTGGAGCATGGCTTACTGATTGTGGTGGCCTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATgg < 2:558984/122‑1 (MQ=255) gTATGACTACCAGGGGCGTGGGCGGACCTATACGCTGAGCTGGAGCATGGCTTACTGATTGTGGTGGCCTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATgg > 1:558984/1‑122 (MQ=255) tATGACTACCAGGGGCGTGGGCGGACCTATACGCTGAGCTGGAGCATGGCTTACTGATTGTGGTGGCCTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTg < 2:364384/150‑1 (MQ=255) aCTACCAGGGGCGTGGGCGGACCTATACGCTGAGCTGGAGCATGGCTTACTGATTGTGGTGGCTTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCgg < 2:465716/150‑1 (MQ=255) ccAGGGGCGTGGGCGGACCTATACGCTGAGCTGGAGCATGGCTTACTGATTGTGGTGGCCTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGCCa > 1:403491/1‑150 (MQ=255) cAGGGGCGTGGGCGGACCTATACGCTGAGCTGGAGCATGGCTTACTGATTGTGGTGGCCTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGCCAg < 2:403491/150‑1 (MQ=255) aGGGGCGTGGGCGGACCTATACGCTGAGCTGGAGCATGGCTTACTGATTGTGGTGGCCTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGCCAgg < 1:1129115/150‑1 (MQ=255) gTGGGCGGACCTATACGCTGAGCTGGAGCATGGCTTACTGATTGTGGTGGCCTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGCCAGGGTGAAc < 2:42879/150‑1 (MQ=255) gTGGGCGGACCTATACGCTGAGCTGGAGCATGGCTTACTGATTGTGGTGGCCTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGCCAGGGTGAAc < 1:360195/150‑1 (MQ=255) ggACCTATACGCTGAGCTGGAGCATGGCTTACTGATTGTGGTGGCCTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGCCAGGGTGAACGGCAcc < 2:848617/150‑1 (MQ=255) cTATACGCTGAGCTGGAGCATGGCTTACTGATTGTGGTGGCCTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGCCAGGGTGAACGGCACCGCaa > 1:7029/1‑150 (MQ=255) ataCGCTGAGCTGGAGCATGGCTTACTGATTGTGGTGGCCTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGCCAGGGTGAACGGCACCGCaaaa > 1:1022629/1‑150 (MQ=255) cGCTGAGCTGGAGCATGGCTTACTGATTGTGGTGGCCTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGCCAGGGTGAACGGCACCGCAAACTCa > 1:620559/1‑150 (MQ=255) cGCTGAGCTGGAGCATGGCTTACTGATTGTGGTGGCCTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGCCAGGGTGAACGGCACCGCAAAATCa > 1:813909/1‑150 (MQ=255) gCTGAGCTGGAGCATGGCTTACTGATTGTGGTGGCCTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGCCAGGGTGAACGGCACCGCAAAATCaa < 1:601684/150‑1 (MQ=255) cTGAGCTGGAGCATGGCTTACTGATTGTGGTGGCCTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGCCAGGGTGAACGGCACCGCAAAATCAAg < 2:813909/150‑1 (MQ=255) tGGAGCATGGCTTACTGATTGTGGTGGCCTGAACAGGCCCGTTCAg > 1:829645/1‑46 (MQ=25) tGGAGCATGGCTTACTGATTGTGGTGGCCTGAACAGGCCCGTTCAg < 2:829645/46‑1 (MQ=25) aGCATGGCTTACTGATTGTGGTGGCCTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGCCAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTc < 2:7029/150‑1 (MQ=255) ttGTGGTGGCCTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCgg > 2:735851/1‑97 (MQ=255) ttGTGGTGGCCTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCgg < 1:735851/97‑1 (MQ=255) tgtgGTGGCCTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGCCAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATAACAGc < 1:258559/150‑1 (MQ=255) gtggCCTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCAGATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGCCAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCACATAACAGCCCCt > 2:438153/1‑150 (MQ=255) cTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCaaa < 1:97359/47‑1 (MQ=255) cTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCaaa > 2:97359/1‑47 (MQ=255) cTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGc > 1:199936/1‑59 (MQ=255) cTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGc < 2:199936/59‑1 (MQ=255) tGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGCCAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATAACAGCCCCTCGGCCTCCCAGGCCtg > 1:166576/1‑150 (MQ=255) | GCAGTACAGCACGGTATGGGGACAGCGTGCGACGTTGTTCTATTCGCCGACCTACGGGCCGGCGTATCTGTATGACTACCAGGGGCGTGGGCGGACCTATACGCTGAGCTGGAGCATGGCTTACTGATTGTGGTGGCCTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGCCAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATAACAGCCCCTCGGCCTCCCAGGCCTG > NC_002947/2500470‑2500767 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |