| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,172,489 | A→G | 10.5% | T240A (ACG→GCG) | PP_2784 → | short‑chain dehydrogenase/reductase family oxidoreductase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,172,489 | 0 | A | G | 10.5% | 97.6 / 2.2 | 38 | T240A (ACG→GCG) | PP_2784 | short‑chain dehydrogenase/reductase family oxidoreductase |
| Reads supporting (aligned to +/- strand): ref base A (21/13); new base G (2/2); total (23/15) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.46e-01 | |||||||||||
GGCGGCTCAAGCGCGCATCGCCGGGATCACCCATGAGCAGATCCTGCGCAATGCCAAGAAGAAGTTGCCCCTGCGGCGCTTCATTCAGGGCGACGAAGTGGCGGCCATGGTTCGTTATCTGGCGAGCCCGCAGGCGAGTGGTGTCACGGCGCAAAGCCTGATGATCGACGGCGGTGCCGGGTTGGGAATGTAGCCATGGCTCGACTGGGATTGAACCGCGGCCTTTTGGCCGCGCTGGTCAGCCTCGGCCCGCCAGCGGCGATCGCCGAGTGGTTGCCGGAGCATCATGAAGCGG > NC_002947/3172344‑3172638 | ggcggcTCAAGCGCGCATCGCCGGGATCACCCATGAGCAGATCCTGCGCAATGCCAAGAAGAAGTTGCCCCTGCGGCGCTTCATTCAGGGCGACGAAGTGGCGGCCATGGTTCGTTATCTGGCGAGCCCGCAGGCGAGTGGTGTCACGgc < 1:737289/150‑1 (MQ=255) ggcTCAAGCGCGCATCGCCGGGATCACCCATGAGCAGATCCTGCGCAATGCCAAGAAGAAGTTGCCCCTGCGGCGCTTCATTCAGGGCGACGAAGTGGCGGCCATGGTTCGTTATCTGGCGAGCCCGCAGGCGAGTGGTGTCACGGCGCa > 1:1130538/1‑150 (MQ=255) gcgcATCGCCGGGATCACCCATGAGCAGATCCTGCGCAATGCCAGGAAGAAGTTGCCCCTGCGGCGCTTCATTCAGGGCGACGAAGTGGCGGCCATGGTTCGTTATCTGGCGAGCCCGCAGGCGAGTGGTGTCACGGCGCAAAGCCtgat < 2:870113/150‑1 (MQ=255) gcgcATCGCCGGGATCACCCATGAGCAGATCCTGCGCAATGCCAAGAAGAAGTTGCCCCTGCGGCGCTTCATTCAGGGCGACGAAGTGGCGGCCATGGTTCGTTATCTGGCGAGCCCGCAGGCGAGTGGTGTCACGGCGCAAAGCCtgat < 1:273671/150‑1 (MQ=255) aTCGCCGGGATCACCCATGAGCAGATCCTGCGCAATGCCAAGAAGAAGTTGCCCCTGCGGCGCTTCATTCAGGGCGACGAAGTGGCGGCCATGGTTCGTTATCTGGCGAGCCCGCAGGCGAGTGGTGTCACGGCGCAAAGCCTGATGATc > 2:1059851/1‑150 (MQ=255) cccATGAGCAGATCCTGCGCAATGCCAAGAAGAAGTTGCCCCTGCGGCGCTTCATTCAGGGCGACGAAGTGGCGGCCATGGTTCGTTATCTGGCGAGCCCGCAGGCGAGTGGTGTCACGGCGCAAAGCCTGATGATCGACGGCGGTGCCg < 2:1130538/150‑1 (MQ=255) ccATGAGCAGATCCTGCGCAATGCCAAGAAGAAGTTGCCCCTGCGGCGCTTCATTCAGGGCGACGAAGTGGCGGCCATGGTTCGTTATCTGGCGAGCCCGCAGGCGAGTGGTGTCACGGCGCAAAGCCTGATGATCGACGGCGGTGCCgg > 2:389564/1‑150 (MQ=255) aTGAGCAGATCCTGCGCAATGCCAAGAAGAAGTTGCCCCTGCGGCGCTTCATTCAGGGCGACGAAGTGGCGGCCATGGTTCGTTATCTGGCGAGCCCGCAGGCGAGTGGTGTCACGGCGCAAAGCCTGATGATCGACGGCGGTGCCGGGt > 2:780080/1‑150 (MQ=255) gAGCAGATCCTGCGCAATGCCAAGAAGAAGTTGCCCCTGCGGCGCTTCATTCAGGGCGACGAAGTGGCGGCCATGGTTCGTTATCTGGCGAGCCCGCAGGCGAGTGGTGTCACGGCGCAAAGCCTGATGATCGACGGCGGTGCCGGGTTg < 1:127540/150‑1 (MQ=255) gcAATGCCAAGAAGAAGTTGCCCCTGCGGCGCTTCATTCAGGGCGACGAAGTGGCGGCCATGGTTCGTTATCTGGCGAGCCCGCAGGCGAGTGGTGTCACGGCGCAAAGCCTGATGATCGACGGCGGTGCCGGGTTGGGAATGTAGCCAt > 1:119028/1‑150 (MQ=255) agaagTTGCCCCTGCGGCGCTTCATTCAGGGCGACGAAGTGGCGGCCATGGTTCGTTATCTGGCGAGCCCGCAGGCGAGTGGTGTCACGGCGCAAAGCCTGATGATCGACGGCGGTGCCGGGTTGGGAATGTAGCCATGGCTCGACTggg < 1:457932/150‑1 (MQ=255) tGCCCCTGCGGCGCTTCATTCAGGGCGACGAAGTGGCGGCCATGGTTCGTTATCTGGCGAGCCCGCAGGCGAGTGGTGTCACGGCGCAAAGCCTGATGATCGACGGCGGTGCCGGGTTGGGAATGTAGCCATGGCTCGACTGGGATTGac < 1:278902/150‑2 (MQ=255) cTGCGGCGCTTCATTCAGGGCGACGAAGTGGCGGCCATGGTTCGTTATCTGGCGAGCCCGCAGGCGAGTGGTGTCGCGTCGCAAAGCCTGATGATCGACGGCGGTGCCGGGTTGGGAATGTAGCCATGGCTCGACTGGGAtt < 1:25512/142‑1 (MQ=255) cTGCGGCGCTTCATTCAGGGCGACGAAGTGGCGGCCATGGTTCGTTATCTGGCGAGCCCGCAGGCGAGTGGTGTCGCGTCGCAAAGCCTGATGATCGACGGCGGTGCCGGGTTGGGAATGTAGCCATGGCTCGACTGGGAtt > 2:25512/1‑142 (MQ=255) ttcattcaGGGCGACGAAGTGGCGGCCATGGTTCGTTATCTGGCGAGCCCGCAGGCGAGTGGTGTCACGGCGCAAAGGTGGGGGATGGACTGCGGTGCCGGGTTGGGAATGTAGCCATGGCTCGACTGGGATTGAACCGCGGCCTTTTgg > 1:209211/1‑150 (MQ=255) ttcattcaGGGCGACGAAGTGGCGGCCATGGTTCGTTATCTGGCGAGCCCGCAGGCGAGTGGTGTCACGGCGCAAAGCCTGATGATCGACGGCGGTGCCGGGTTGGGAATGTAGCCATGGCTCGACTGGGATTGAACCGCGGCCTTTTgg > 2:29818/1‑150 (MQ=255) cattcaGGGCGACGAAGTGGCGGCCATGGTTCGTTATCTGGCGAGCCCGCAGGCGAGTGGTGTCACGGCGCAAAGCCTGATGATCGACGGCGGTGCCGGGTTGGGAATGTAGCCAt < 2:849165/116‑1 (MQ=255) cattcaGGGCGACGAAGTGGCGGCCATGGTTCGTTATCTGGCGAGCCCGCAGGCGAGTGGTGTCACGGCGCAAAGCCTGATGATCGACGGCGGTGCCGGGTTGGGAATGTAGCCAt > 1:849165/1‑116 (MQ=255) tcaGGGCGACGAAGTGGCGGCCATGGTTCGTTATCTGGCGAGCCCGCAGGCGAGTGGTGTCACGGCGCAAAGCCTGATGATCGACGGCGGTGCCGGGTTGGGAATGTAGCCATGGCTCGACTGGGATTGAACCGCGGCCTTTTGGCcgcg > 1:820687/1‑150 (MQ=255) ggCGACGAAGTGGCGGCCATGGTTCGTTATCTGGCGAGCCCGCAAGCGAGTGGTTTCACGGCGCAAAGCCTGATGATCGACGGCGATGCCGGGTTGGGAATGTAGCCATGGCTCGACTGGGCGTGAACCTCGGCCTTTTGGCCGCGCTgg > 2:168037/1‑150 (MQ=255) ggCGACGAAGTGGCGGCCATGGCTGGTTATCTGGCGAGCACGAAGGCGAGGGGTGTCAGGGCGCAAAGCCTGATGGTCTACGGCGGTGCGGGGTTGGGAATGTACCGATGGCTCGAGTGGGATTGAACCGCGGACTTTTGGCTGCGCTgg > 1:579124/1‑150 (MQ=255) cATGGTTCGTTATCTGGCGAGCCCGCAGGCGAGTGGTGTCACGGCGCAAAGCCTGATGATCGACGGCGGTGCCGGGTTGGGAATGTAGCCATGGCTCGACTGGGATTGAACCGCGGCCTTTTGGCCGCGCTGGTCAGCCTCGGCCCGCCa > 1:23130/1‑150 (MQ=255) gTTCGTTATCTGGCGAGCCCGCAGGCGAGTGGTGTCACGGCGCAAAGCCTGATGATCGACGGCGGTGCCGGGTTGGGAATGTAGCCATGGCTCGACTGGGATTGAACCGCGGCCTTTTGGCCGCGCTGGTCAGCCTCGGCCCGCCAgcgg < 1:780080/150‑1 (MQ=255) gTTCGTTATCTGGCGAGCCCGCAGGCGAGTGGTGTCACGGCGCAAAGCCTGATGATCGACGGCGGTGCCGGGTTGGGAATGTAGCCATGGCTCGACTGGGATTGAACCGCGGCCTTTTGGCCGCGCTGGTCAGCCTCGGCCCGCCAgcgg < 1:430280/150‑1 (MQ=255) gTTCGTTATCTGGCGAGCCCGCAGGCGAGTGGTGTCACGGCGCAAAGCCTGATGATCGACGGCGGTGCCGGGTTGGGAATGTAGCCATGGCTCGACTGCGATTGAACCGCGGCCTTTTGGCCGCGCTGGTCAGCCTCGGCCCGCCAgcgg > 1:974379/1‑150 (MQ=255) ttCGTTATCTGGCGAGCCCGCAGGCGAGTGGTGTCACGGCGCAAAGCCTGATGATCGACGGCGGTGCCGGGTTGGGAATGTAGCCATGGCTCGACTGGGATTGAACCGCGGCCTTTTGGCCGCGCTGGTCAGCCTCGGCCCGCCAgcggc > 2:1035650/1‑150 (MQ=255) aTCTGGCGAGCCCGCAGGCGAGTGGTGTCACGGCGCAAAGCCTGATGATCGACGGCGGTGCCGGGTTGGGAATGTAGCCATGGCTCGACTGGGATTGAACCGCGGCCTTTTGGCCGCGCTGGTCAGCCTCGGCCCGCCAGCGGCGATCGc > 1:739051/1‑150 (MQ=255) ggCGAGCCCGCAGGCGAGTGGTGTCACGGCGCAAAGCCTGATGATCGACGGCGGTGCCGGGTTGGGAAt < 1:1004677/69‑1 (MQ=255) ggCGAGCCCGCAGGCGAGTGGTGTCACGGCGCAAAGCCTGATGATCGACGGCGGTGCCGGGTTGGGAAt > 2:1004677/1‑69 (MQ=255) ccGCAGGCGAGTGGTGTCACGGCGCAAAGCCTGATGATCGACGGCGGTGCCGGGTTGGGAATGTAGCCATGGCTCGACTGGGATTGAAcc > 2:163983/1‑90 (MQ=255) ccGCAGGCGAGTGGTGTCACGGCGCAAAGCCTGATGATCGACGGCGGTGCCGGGTTGGGAATGTAGCCATGGCTCGACTGGGATTGAAcc < 1:163983/90‑1 (MQ=255) cGCAGGCGAGTGGTGTCACGGCGCAAAGCCTGATGATCGACGGCGGTGCCGGGTTGGGAATGTAGCCATGGCTCGACTGGGATTGAACCGCGGCCTTTTGGCCGCGCTGGTCAGCCTCGGCCCGCCAGCGGCGATCGCCGAGTGGTTGcc > 2:595998/1‑150 (MQ=255) cGCAGGCGAGTGGTGTCACGGCGCAAAGCCTGATGATCGACGGCGGTGCCGGGTTGGGAATGTAGCCATGGCTCGACTGGGATTGAACCGCGGCCTTTTGGCCGCGCTGGTCAGCCTCGGCCCGCCAGCGGCGATCGCCGAGTGGTTGcc > 2:759977/1‑150 (MQ=255) gtgtCACGGCGCAAAGCCTGATGATCGACGGCGGTGCCGGGTTGGGAATGTAGCCATGGCTCGACTGGGATTGAACCGCGGCCTTTTGGCCGCGCTGGTCAGCCTCGGCCCGCCa < 1:539914/115‑1 (MQ=255) gtgtCACGGCGCAAAGCCTGATGATCGACGGCGGTGCCGGGTTGGGAATGTAGCCATGGCTCGACTGGGATTGAACCGCGGCCTTTTGGCCGCGCTGGTCAGCCTCGGCCCGCCa > 2:539914/1‑115 (MQ=255) gtgtCACGGCGCAAAGCCTGATGATCGACGGCGGTGCCGGGTTGGGAATGTAGCCATGGCTCGACTGGGATTGAACCGCGGCCTTTTGGCCGCGCTGGTCAGCCTCGGCCCGCCAGCGGCGATCGCCGAGTGGTTGCCGGAGCATCATGa > 1:719609/1‑150 (MQ=255) tgtCGCGGCGCAAAGCCTGATGATCGACGGCGGTGCCGGGTTGGGAATGTAGCCATGGCTCGACTGGGATTGAACCGCGGCCTTTTGGcc < 2:395535/90‑1 (MQ=255) tgtCGCGGCGCAAAGCCTGATGATCGACGGCGGTGCCGGGTTGGGAATGTAGCCATGGCTCGACTGGGATTGAACCGCGGCCTTTTGGcc > 1:395535/1‑90 (MQ=255) aCGGCGCAAAGCCTGATGATCGACGGCGGTGCCGGGTTGGGAATGTAGCCATGGCTCGACTGGGATTGAACCGCGGCATTTTGGCCGCGCTGGTCAGCCTCGGCCCGCCAGCGGCGATCGCCGAGTGGTTGCCGGAGCATCATGAAGCgg < 1:389564/150‑1 (MQ=255) | GGCGGCTCAAGCGCGCATCGCCGGGATCACCCATGAGCAGATCCTGCGCAATGCCAAGAAGAAGTTGCCCCTGCGGCGCTTCATTCAGGGCGACGAAGTGGCGGCCATGGTTCGTTATCTGGCGAGCCCGCAGGCGAGTGGTGTCACGGCGCAAAGCCTGATGATCGACGGCGGTGCCGGGTTGGGAATGTAGCCATGGCTCGACTGGGATTGAACCGCGGCCTTTTGGCCGCGCTGGTCAGCCTCGGCCCGCCAGCGGCGATCGCCGAGTGGTTGCCGGAGCATCATGAAGCGG > NC_002947/3172344‑3172638 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |