| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,368,475 | A→C | 10.5% | R580R (AGG→CGG) | PP_2964 → | transposase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,368,475 | 0 | A | C | 10.5% | 99.6 / 3.6 | 38 | R580R (AGG→CGG) | PP_2964 | transposase |
| Reads supporting (aligned to +/- strand): ref base A (16/18); new base C (2/2); total (18/20) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TCCCATCATGCCGAGGGGACGTATCGATTAACGAAGCTGGAGAACCGGTGTTGCGCCGAGTAGCGGCGCGGGACATCCCCCCTTCGGCCATCTCGCTGCAGACGGCGCTTATGCAGCGCATGCCGGCCAGGCATGTGCTCGATATCATGGCTAACATCGAGCATTGGATTCAGTTCACGCGGCATTTCGGGCCCATGTCCGGTAACGAGCCGAAGCTCAAAGAGCCTGCCGAGCGCTACCTGATGACGATCTTCGCCATGGGC > NC_002947/3368347‑3368609 | tCCCATCATGCCGAGGGGACGTATCGATTAACGAAGCTGGAGAACCGGTGTTGCGCCGAGTAGCGGCGCGGGACATCCCCCCTTCGGCCATCTCGCTGCAGACGGCGCTTATGCAGCGCATGCCGGCCAGGCATGTGCTCGATATCATgg < 1:1200445/150‑1 (MQ=255) ccATCATGCCGAGGGGACGTATCGATTAACGAAGCTGGAGAACCGGTGTTGCGCCGAGTAGCGGCGCGGGACATCCCCCCTTCGGCCATCTCGCTGCAGACGGCGCTTATGCAGCACATGCCTGGCCGGCATGCGCtgcata > 2:793559/1‑137 (MQ=255) ccATCATGCCGAGGGGACGTATCGATTAACGAAGCTGGAGAACCGGTGTTGCGCCGAGTAGCGGCGCGGGACATCCCCCCTTCGGCCATCTCGCTGCAGACGGCGCTTATGCAGCACATGCCTGGCCGGCATGCGCtgcata < 1:793559/142‑6 (MQ=255) tcatGCCGAGGGGACGTATCGATTAACGAAGCTGGAGAACCGGTGTTGCGCCGAGTAGCGGCGCGGGACATCCCCCCTTCGGCCATCTCGCTGCAGACGGCGCTTATGCAGCGCATGCCTGGCCGGCAtgcgc > 2:217433/1‑130 (MQ=255) tcatGCCGAGGGGACGTATCGATTAACGAAGCTGGAGAACCGGTGTTGCGCCGAGTAGCGGCGCGGGACATCCCCCCTTCGGCCATCTCGCTGCAGACGGCGCTTATGCAGCGCATGCCTGGCCGGCATgcgc < 1:217433/133‑1 (MQ=255) tcatGCCGAGGGGACGTATCGATTAACGAAGCTGGAGAACCGGTGTTGCGCCGAGTAGCGGCGCGGGACATCCCCCCTTCGGCCATCTCGCTGCAGACGGCGCTTATGCAGCGCATGCCGGCCAGGCATGTGCTAGATATCATGGCTAAc < 1:240896/150‑1 (MQ=255) gAGGGGACGTATCGATTAACGAAGCTGGAGAACCGGTGTTGCGCCGAGTAGCGGCGCGGGACATCCCCCCTTCGGCCATCTCGCTGCAGACGGCGCTTATGCAGCGCATGCCGGCCAGGCATGTGCTCGATATCATGGCTAACATCGAGc > 1:112278/1‑150 (MQ=255) gTATCGATTAACGAAGCTGGAGAACCGGTGTTGCGCCGAGTAGCGGCGCGGGACATCCCCCCTTCGGCCATCTCGCTGCAGACGGCGCTTATGCAGCGCATGCCGGCCAGGCATGTGCTCGATATCATGGCTAACATCGAGCATTGGAtt < 2:512806/150‑1 (MQ=255) gTATCGATTAACGAAGCTGGAGAACCGGTGTTGCGCCGAGTAGCGGCGCGGGACATCCCCCCTTCGGCCATCTCGCTGCAGACGGCGCGTATGCAGCGCATGCCGGCCAGGCATGTGCTCGATATCATGGCTAACATCGAGCATTGGAtt < 1:531242/150‑1 (MQ=255) aTCGATTAACGAAGCTGGAGAACCGGTGTTGCGCCGAGTAGCGGCGCGGGACATCCCCCCTTCGGCCATCTCGCTGCAGACGGCGCTTATGCAGCGCATGCCGGCCAGGCATGTGCTCGATATCATGGCTAACATCGAGCATTGGATTCa > 2:1001489/1‑150 (MQ=255) gATTAACGAAGCTGGAGAACCGGTGTTGCGCCGAGTAGCGGCGCGGGACATCCCCCCTTCGGCCATCTCGCTGCAGACGGCGCTTATGCAGCGCATGCCGGCCAGGCATGTGCTCGa < 2:47222/117‑1 (MQ=255) gATTAACGAAGCTGGAGAACCGGTGTTGCGCCGAGTAGCGGCGCGGGACATCCCCCCTTCGGCCATCTCGCTGCAGACGGCGCTTATGCAGCGCATGCCGGCCAGGCATGTGCTCGa > 1:47222/1‑117 (MQ=255) aTTAACGAAGCTGGAGAACCGGTGTTGCGCCGAGTAGCGGCGCGGGACATCCCCCCTTCGGCCATCTCGCTGCAGACGGCGCTTATGCAGCGCATGCCGGCCAGGCAt < 1:859426/108‑1 (MQ=255) aTTAACGAAGCTGGAGAACCGGTGTTGCGCCGAGTAGCGGCGCGGGACATCCCCCCTTCGGCCATCTCGCTGCAGACGGCGCTTATGCAGCGCATGCCGGCCAGGCAt > 2:859426/1‑108 (MQ=255) cGAAGCTGGAGAACCGGTGTTGCGCCGAGTAGCGGCGCGGGACATCCCCCCTTCGGCCATCTCGCTGCAGACGGCGCTTATGCAGCGCATGCCGGCCAGGCATGTGCTCGATATCAt < 2:593947/117‑1 (MQ=255) cGAAGCTGGAGAACCGGTGTTGCGCCGAGTAGCGGCGCGGGACATCCCCCCTTCGGCCATCTCGCTGCAGACGGCGCTTATGCAGCGCATGCCGGCCAGGCATGTGCTCGATATCAt > 1:593947/1‑117 (MQ=255) gaACCGGTGTTGCGCCGAGTAGCGGCGCGGGACATCCCCCCTTCGGCCATCTCGCTGCAGACGGCGCTTATGCAGCGCATGCCGGCCAGGCATGTGCTCGATATCATGGc > 1:1000777/1‑110 (MQ=255) gaACCGGTGTTGCGCCGAGTAGCGGCGCGGGACATCCCCCCTTCGGCCATCTCGCTGCAGACGGCGCTTATGCAGCGCATGCCGGCCAGGCATGTGCTCGATATCATGGc < 2:1000777/110‑1 (MQ=255) gcgcCGAGTAGCGGCGCGGGACATCCCCCCTTCGGCCATCTCGCTGCAGACGGCGCTTATGCAGCGCATGCCGGCCAGGCATGTGCTCGATATCATGGCTAACATCGAGCATTGGATTCAGTTCACGCGGCATTTCGGGCCCATGTCCgg < 2:311271/150‑1 (MQ=255) gcggcgCGGGACATCCCCCCTTCGGCCATCTCGCTGCAGACGGCGCTTATGCAGCGCATGCCGGCCAGGCATGTGCTCGATATCATGGCTAACATCGAGCATTGGATTCAGTTCACGCGGCATTTCGGGCCCATGTCCg > 1:504147/1‑139 (MQ=255) gcggcgCGGGACATCCCCCCTTCGGCCATCTCGCTGCAGACGGCGCTTATGCAGCGCATGCCGGCCAGGCATGTGCTCGATATCATGGCTAACATCGAGCATTGGATTCAGTTCACGCGGCATTTCGGGCCCATGTCCg < 2:504147/139‑1 (MQ=255) ggcgCGGGACATCCCCCCTTCGGCCATCTCGCTGCAGACGGCGCTTATGCAGCGCATGCCGGCCAGGCATGTGCGTATTATCAGGGGTAACATCGAGCATTGGATTCAGTTCACGCGGCATTTCGGGCCCATGTCCGGTAACGCGCCGaa > 1:749097/1‑150 (MQ=255) ccccccTTCGGCCATCTCGCTGCAGACGGCGCTTATGCAGCGCATGCCGGCCAGGCATGTGCTCGATATCATGGCTAACATCGAg > 1:1100053/1‑85 (MQ=255) ccccccTTCGGCCATCTCGCTGCAGACGGCGCTTATGCAGCGCATGCCGGCCAGGCATGTGCTCGATATCATGGCTAACATCGAg < 2:1100053/85‑1 (MQ=255) ccccTTCGGCCATCTCGCTGCAGACGGCGCTTATGCAGCGCATGCCGGCCAGGCATGTGCTCGATATCATGGCTAACATCGAGCATTGGAtt < 2:239679/92‑1 (MQ=255) ccccTTCGGCCATCTCGCTGCAGACGGCGCTTATGCAGCGCATGCCGGCCAGGCATGTGCTCGATATCATGGCTAACATCGAGCATTGGAtt > 1:239679/1‑92 (MQ=255) ccTTCGGCCATCTCGCTGCAGACGGCGCTTATGCAGCGCATGCCGGCCAGGCATGTGCTCGATATCATGGCTAACATCGAGCATTGGATTCAGTTCACGCGGCATTTCGGGCCAATTTCCGGTAACGAGCCGAAGCTCAAAGAGCCTGcc < 1:1001489/150‑1 (MQ=255) cTTCGGCCATCTAGCTGCAGACGGCGCTTATGCAACGCATGCCGGCCAGGCATGTGCTCGATATCATGGCTAACATCGAGCATTGGATTCAGTTCACGCGGCATTTCGGGCCCATGTCCGGTAACGAGCCGAAGCTCAAAGAGCCTGCCg > 1:833907/1‑150 (MQ=255) tCGGCCATCTCGCTGCAGACGGCGCTTATGCAGCGCATGCCGGCCAGGCATGTGCTCGATATCATGGCTAACATCGAGCATTGGATTCAGTTCACGCGGCATTTCGGGCCCATGTCCGGTAACGAGCCGAAGCTCAAAGAGCCTGCCGAg < 2:112278/150‑1 (MQ=255) cATCTCGCTGCAGACGGCGCTTATGCAGCGCATGCCGGCCAGGCATGTGCTCGATATCATGGCTAACATCGAGCATTGGATTCAGTTCACGCGGCAttt < 2:600135/99‑1 (MQ=255) cATCTCGCTGCAGACGGCGCTTATGCAGCGCATGCCGGCCAGGCATGTGCTCGATATCATGGCTAACATCGAGCATTGGATTCAGTTCACGCGGCAttt > 1:600135/1‑99 (MQ=255) aTCTCGCTGCAGACGGCGCTTATGCAGCGCATGCCGGCCAGGCATGTGCTCGATATCATGGCTAACATCGAGCATTGGATTCAGTTCACGCGGCATTTCGGGCCCATGTCCGGTAACGAGCCGAAGCTCAAAGAGCCTGCCGAGCGCTAc > 2:1094532/1‑150 (MQ=255) aCGGCGCTTATGCAGCGCATGCCGGCCAGGCATGTGCTCGATATCATGGCTAACATCGAGCATTGGATTCAGTTCACGCGGCATTTCGGGCCCATGTCCGGTAACGAGCCGAAGCTCAAAGAGCCTGCCGAGCGCTACCTGATGACGATc < 1:1094532/150‑1 (MQ=255) ggCGCTTATGCAGCGCATGCCGGCCAGGCATGTGCTCGATATCATGGCTAACATCGAGCATTGGATTCAGTTCACGCGGCATTTCGGGCCCATGTCCGGTAACGAGCCGAAGCTCAAAGAGCCTGCCGAGCGCTACCTGATGACGATCtt > 2:788450/1‑150 (MQ=255) gcgcTTATGCAGCGCATGCCGGCCAGGCATGTGCTCGATATCATGGCTAACATCGAGCATTGGATTCAGTTCACGCGGCATTTCGGGCCCATGTCCgg < 2:135506/98‑1 (MQ=255) gcgcTTATGCAGCGCATGCCGGCCAGGCATGTGCTCGATATCATGGCTAACATCGAGCATTGGATTCAGTTCACGCGGCATTTCGGGCCCATGTCCgg > 1:135506/1‑98 (MQ=255) tATGCAGCGCATGCCGGCCAGGCATGTGCTCGATATCATGGCTAACATCGAGCATTGGATTCAGTTCACGCGGCATTTCGGGCCCATGTCCGGTAACGAGCCGAAGCTCAAAGAGCCTGCCGAGCGCTACCTGATGACGATCTTCGCCAt < 1:788450/150‑1 (MQ=255) gaGCGCATGCCGGCCAGGCATGTGCTCGATATCATGGCTAACATCGAGCATTGGATTCAGTTCACGCGGCATTTCGGGCCCATGTCCGGTAACGAGCCGAAGCTCAAAGAGCCTGCCGAGCGCTACCTGATGACGATCTTCGCCATGGGc > 2:172381/2‑150 (MQ=255) | TCCCATCATGCCGAGGGGACGTATCGATTAACGAAGCTGGAGAACCGGTGTTGCGCCGAGTAGCGGCGCGGGACATCCCCCCTTCGGCCATCTCGCTGCAGACGGCGCTTATGCAGCGCATGCCGGCCAGGCATGTGCTCGATATCATGGCTAACATCGAGCATTGGATTCAGTTCACGCGGCATTTCGGGCCCATGTCCGGTAACGAGCCGAAGCTCAAAGAGCCTGCCGAGCGCTACCTGATGACGATCTTCGCCATGGGC > NC_002947/3368347‑3368609 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |