| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,532,597 | G→C | 9.5% | A210G (GCC→GGC) | PP_3121 ← | transcriptional regulator, LysR family |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,532,597 | 0 | G | C | 9.5% | 128.7 / 4.9 | 42 | A210G (GCC→GGC) | PP_3121 | transcriptional regulator, LysR family |
| Reads supporting (aligned to +/- strand): ref base G (21/17); new base C (2/2); total (23/19) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.95e-01 | |||||||||||
GACCAAGGTGACGCAGCGGGCACCCAGCTCCTGCATCTGGTTGATGCACAGGGCCGGCACGGCACTGACCCCCAGGCCGCTGGCCACCATGCGGCCGATGGTCGTCAGCTGGTGGCTTTCGAACGCGACTGCCAGCTTGCCGTGGCGGGCCGCCACATTCTGCTCCATCAGCAGGCGCACCGCCGAAGGGCGCTGCAGGGCCACGAAATCTTCGGCCATCAGCTGTGCCCAGCTGACCTGGGGCAGCAGTGCCAAGGGCGAGTCGGCGGCCACTACGGCAACGAAGCGGTCCATG > NC_002947/3532449‑3532743 | gACCAAGGTGACGCAGCGGGCACCCAGCTCCTGCATCTGGTTGATGCACAGGGCCGGCACGGCACTGACCCCCAGGCAGGCGGCCACCATGCGGCCGATGGTCGTCAGCTGGTGGATTTCGCAAGCGGATGCTTGATTACCGgggcgggc > 1:866610/1‑150 (MQ=255) tgccGCAGCGGGCACCCAGCTCCTGCATCTGGTTGATGCACAGGGCCGGCACGGCACTGACCCCCAGGCCGCTGGCCACCATGCGGCCGATGGTCGTCAGCTGGTGGCTTTCGAACGCGACTGCCAGCTTGCCGTGGCGGCCCGCcacgg < 1:513768/147‑3 (MQ=255) gCAGCGGGCACCCAGCTCCTGCATCTGGTTGATGCACAGGGCCGGCACGGCACTGACCCCCAGGCCGCTGGCCACCATGCGGCCGATGGTCGTCAGCTGGTGGCTTTCGAACGCGACTGCCAGCTTGCCGTGGCGGgccgc > 2:1071040/1‑141 (MQ=255) gCAGCGGGCACCCAGCTCCTGCATCTGGTTGATGCACAGGGCCGGCACGGCACTGACCCCCAGGCCGCTGGCCACCATGCGGCCGATGGTCGTCAGCTGGTGGCTTTCGAACGCGACTGCCAGCTTGCCGTGGCGGgccgc < 1:1071040/141‑1 (MQ=255) cccAGCTCCTGCATCTGGTTGATGCACAGGGCCGGCACGGCACTGACCCCCAGGTCGCTGGCCACCATGCGGCCGATGGTCGTCAGCTGGTGGCTTTCGAACGCTACTGCCAGCTTGCCGTGGCGGGCCGCCACATTCTGCTCCATcagc < 2:359316/150‑1 (MQ=255) cTGCATCTGGTTGATGCACAGGGCCGGCACGGCACTGACCCCCAGGCCGCTGGCCACGATGCGGCCGATGGTCGTCAGCTGGTGGCTTTCGAACGCGACTGCCAGCTTGCCGTGGCGGGCCGCCACATTCTGCTCCATCAGCAGGCGCAc > 1:329897/1‑150 (MQ=255) cTGCATCTGGTTGATGCACAGGGCCGGCACGGCACTGACCCCCAGGCCGCTGGCCACCATGCGGCCGATGGTCGTCAGCTGGTGGCTTTCGAACGCGACTGCCAGCTTGCCGTGGCGGGCCGCCACATTCTGCTCCATCAGCAGGCGCAc > 2:1018339/1‑150 (MQ=255) tGGTTGATGCACAGGGCCGGCACGGCACTGACCCCCAGGCCGCTGGCCACCATGCGGCCGATGGTCGTCAGCTGGTGGCTTTCGAACGCGACTGCCAGCTTGCCGTGGCGGGCCGCCACATTCTGCTCCATCAGCAGGCGCACCGCCGaa > 1:398106/1‑150 (MQ=255) ggTTGATGCACAGGGCCGGCACGGCACTGACCCCCAGGCCGCTGGCCACCATGCGGCCGATGGTCGTCAGCTGGTGGCTTTCGAACGCGACTGCCAGCTTGCCGTGGCGGGCCGCCACATTCTGCTCCATCAGCAGGCGCACCGCCGAAg > 1:150496/1‑150 (MQ=255) gTTGATGCACAGGGCCGGCACGGCACTGACCCCCAGGCCGCTGGCCACCATGCGGCCGATGGTCGTCAGCTGGTGGCTTTCGAACGCGACTGCCAGCTTGCCGTGGCGGGCCGCCACATTCTGCTCCATCAGCAGGCGCACCGCCGAAgg > 1:277842/1‑150 (MQ=255) gTTGATGCACAGGGCCGGCACGGCACTGACCCCCAGGCCGCTGGCCACCATGCGGCCGATGGTCGTCAGCTGGTGGCTTTCGAACGCGACTGCCAGCTTGCCGTGGCGGGCCGCCACATTCTGCTCCATCAGCAGGCGCACCGCCGAAgg > 1:595384/1‑150 (MQ=255) gATGCACAGGGCCGGCACGGCACTGACCCCCAGGCCGCTGGCCACCATGCGGCCGATGGTCGTCAGCTGGTGGCTTTCGAACGCCACTGCCAGCTTGCCGTGGCGGGCCGCCACATTCTGCTCCATCAGCAGGCGTCCCGCCGaacttcg < 2:866610/150‑6 (MQ=255) caGGGCCGGCACGGCACTGACCCCCAGGCCGCTGGCCACCATGCGGCCGATGGTCGTCAGCTGGTGGCTTTCGAACGCGACTGCCAGCTTGCCGTGGCGGGCCGCCACATTCTGCTCCATCAGCAGGCGCACCGCCGAAGGGCGCTGCAg < 2:750275/150‑1 (MQ=255) aGGGCCGGCACGGCACTGACCCCCAGGCCGCTGGCCACCATGCGGCCGATGGTCGTCAGCTGGTGGCTTTCGAACGCGACTGCCAGCTTGCCGTGGCGGGCCGCCACATTCTGCTCCATCAGCAGGCGCACCGCCGAAGGGCGCTGCAgg > 1:191454/1‑150 (MQ=255) aGGGCCGGCACGGCACTGACCCCCAGGCCGCTGGCCACCATGCGGCCGATGGTCGTCAGCTGGTGGCTTTCGAACGCGACTGCCAGCTTGCCGTGGCGGGCCGCCACATTCTGCTCCATCAGCAGGCGCACCGCCGAAGGGCGCTGCAgg < 2:191454/150‑1 (MQ=255) ggcacggcacTGACCCCCAGGCCGCTGGCCACCATGCGGCCGATGGTCGTCAGCTGGTGGCTTTCGAACGCGACTGCCAGCTTGCCGTGGCGGGCCGCCACATTCTGCTCCATCAGCAGGCGCACCGCCGAAGGgcgc < 2:188501/138‑1 (MQ=255) ggcacggcacTGACCCCCAGGCCGCTGGCCACCATGCGGCCGATGGTCGTCAGCTGGTGGCTTTCGAACGCGACTGCCAGCTTGCCGTGGCGGGCCGCCACATTCTGCTCCATCAGCAGGCGCACCGCCGAAGGgcgc > 1:188501/1‑138 (MQ=255) tGACCCCCAGGCCGCTGGCCACCATGCGGCCGATGGTCGTCAGCTGGTGGCTTTCGAACGCGACTGCCAGCTTGCCGTGGCGGGCCGCCACATTCTGCTCCATCAGCAGGCGCACCGCCGAAGGGCGCTGCAGGGCCACGAAATCTTCgg > 1:596838/1‑150 (MQ=255) ccccAGGCCGCTGGCCACCATGCGGCCGATGGTCGTCAGCTGGTGGCTTTCGAACGCGACTGCCAGCTTGCCGTGGCGGgccgc > 2:827369/1‑84 (MQ=255) ccccAGGCCGCTGGCCACCATGCGGCCGATGGTCGTCAGCTGGTGGCTTTCGAACGCGACTGCCAGCTTGCCGTGGCGGgccgc < 1:827369/84‑1 (MQ=255) cccAGGCCGCTGGCCACCATGCGGCCGATGGTCGTCAGCTGGTGGCTTTCGAACGCGACTGCCAGCTTGCCGTGGCGGGCCGCCACATTCTGCTCCATCAGCAGGCGCACCGCCGAAGGGCGCTGCAGGGCCACGAAATCTTCGGCCATc > 1:1197219/1‑150 (MQ=255) ccGCTGGCCACCATGCGGCCGATGGTCGTCAGCTGGTGGCTTTCGAACGCGACTGCCAGCTTGCCGTGGCGGGCCGCCACATTCTGCTCCATCAGCAGGCGCACCGCCGAAGGGCGCTGCATGGCCACGAAATCTTCGGCCATCAGCtgt < 1:642001/150‑1 (MQ=255) tGGCCACCATGCGGCCGATGGTCGTCAGCTGGTGGCTTTCGAACGCGACTGCCAGCTTGCCGTGGCGGGCCGCCACATTCTGCTCCATCAGCAGgc < 2:647599/96‑1 (MQ=255) tGGCCACCATGCGGCCGATGGTCGTCAGCTGGTGGCTTTCGAACGCGACTGCCAGCTTGCCGTGGCGGGCCGCCACATTCTGCTCCATCAGCAGgc > 1:647599/1‑96 (MQ=255) gCCACCATGCGGCCGATGGTCGTCAGCTGGTGGCTTTCGAACGCCACTGCCAGCTTGCCGTGGCGGGCCGCCACATTCTGCTCCATCAGCAGGCGCATGACCGAAGGGCGCTGCAGGGCCACGAAATCTTCGGCCATCAGCTGTGCCCAg < 1:688472/150‑1 (MQ=255) caccaTGCGGCCGATGGTCGTCAGCTGGTGGCTTTCGAACGCTACTGCCAGCTTGCCGTGGCGGGCCGCCACATTCTGCTCCATCAGCAGGCGCACCGCCGAAGGGCGCTGCAGGGCCACGAAATCTTCGGCCATCAGCTGTGCCCAGCt > 1:958543/1‑150 (MQ=255) caccaTGCGGCCGATGGTCGTCAGCTGGTGGCTTTCGAACGCGACTGCCAGCTTGCCGTGGCGGGCCGCCACATTCTGCTCCATCAGCAGGCGCACCGCCGAAGGGCGCTGCAGGGCCACGAAATCTTCGGCCATCAGCTGGGCACAGCt > 2:882801/1‑150 (MQ=255) tGCGGCCGATGGTCGTCAGCTGGTGGCTTTCGAACGCGACTGCCAGCTTGCCGTGGCGGGCCGCCACATTCTGCTCCATCAGCAGGCGCACCGCCGAAGGGCGCTGCAGGGCCACGAAATCTTCGGCCATCAGCTGGGCACAGCTGatgg < 1:882801/150‑4 (MQ=255) ggCCGATGGTCGTCAGCTGGTGGCTTTCGAACGCGACTGCCAGCTTGCCGTGGCGGGCCGCCACATTCTGCTCCATCAGCAGGCGCACCGCCGAAGGGCGCTGCAGGGCCACGAAATCTTCGGCCATCAGCTGTGCCCAGCTGACCTggg > 2:1173665/1‑150 (MQ=255) ccGATGGTCGTCAGCTGGTGGCTTTCGAACGCGACTGCCAGCTTGCCGTGGCGGGCCGCCACATTCTGCTCCATCAGCAGGCGCACCGCCGAAGGGCGCTGCATGGCCACGAAATCTTCGGCCATCAGCTGTGCCCAGCTGACCTGGGgc > 1:624665/1‑150 (MQ=255) aTGGTCGTCAGCTGGTGGCTTTCGAACGCGACTGCCAGCTTGCCGTGGCGGGCCGCCACATTCTGCTCCATCAGCAGgc > 1:881836/1‑79 (MQ=255) aTGGTCGTCAGCTGGTGGCTTTCGAACGCGACTGCCAGCTTGCCGTGGCGGGCCGCCACATTCTGCTCCATCAGCAGgc < 2:881836/79‑1 (MQ=255) gtcgtcAGCTGGTGGCTTTCGAACGCGACTGCCAGCTTGCCGTGGCGGGCCGCCACATTCTGCTCCATCAGCAGGCGCACCGCCGAAGGGCGCTGCAGGGCCACGAAATCTTCGGCCATCAGCTGTGCCCAGCTGACCTGGGGCAGCAGt < 2:1197219/150‑1 (MQ=255) gtcgtcAGCTGGTGGCTTTCGAACGCGACTGCCAGCTTGCCGTGGCGGGCCGCCACATTCTGCTCCATCAGCAGGCGCACCGCCGAAGGGCGCTGCAGGGCCACGAAATCTTCGGCCATCAGCTGTGCCCAGCTGACCTGGGGCAGCAGt < 2:29596/150‑1 (MQ=255) tcgtcAGCTGGTGGCTTTCGAACGCGACTGCCAGCTTGCCGTGGCGGGCCGCCACATTCTGCTCCATCAGCAGGCGCACCGCCGAAGGGCGCTGCAGGGCCACGAAATCTTCGGCCATCAGCTGTGCCCAGCTGACCTGGGGCAGCAGTg > 1:727639/1‑150 (MQ=255) tggtggCTTTCGAACGCGACTGCCAGCTTGCCGTGGCGGGCCGCCACATTCTGCTCCATCAGCAGGCGCACCGCCGAAGGGCGCTGCAGGGCCACGAAATCTTCGGCCATCAGCTGTGCCCAGCTGACCTGGGGCAGCAGTGCCAAGGGc < 2:727639/150‑1 (MQ=255) ggCTTTCGAACGCGACTGCCAGCTTGCCGTGGCGGGCCGCCACATTCTGCTCCATCAGCAGGCGCACCGCCGAAGGGCGCTGCAGGGCCACGAAATCTTCGGCCATCAGCTGTGCCCAGCTGACCTGGGGCAGCAGTGCCAAGGGCGAGt > 1:903989/1‑150 (MQ=255) tttCGAACGCGACTGCCAGCTTGCCGTGGCGGGCCGCCACATTCTGCTCCATCAGCAGGCGCACCGCCGAAGGGCGCTGCAGGGCCACGAAATCTTCGGCCATCAGCTGTGCCCAGCTGACCTGGGGCAGCAGTGCCAAGGGCGAGTcgg > 2:760872/1‑150 (MQ=255) gCCAGCTTGCCGTGGCGGGCCGCCACATTCTGCTCCATCAGCAGGCGCACCGCCGAAGGGCGCTGCAGGGCCACGAAATCTTCGGCCATCAGCTGTGCCCAGCTGACCTggg > 1:813924/1‑112 (MQ=255) gCCAGCTTGCCGTGGCGGGCCGCCACATTCTGCTCCATCAGCAGGCGCACCGCCGAAGGGCGCTGCAGGGCCACGAAATCTTCGGCCATCAGCTGTGCCCAGCTGACCTggg < 2:813924/112‑1 (MQ=255) ccAGCTTGCCGTGGCGGGCCGCCACATTCTGCTCCATCAGCAGGCGCACCGCCGAAGGGCGCTGCAGGGCCACGAAATCTTCGGCCATCAGCTGTGCCCAGCTGACCTGGGGCAGCAGTGCCAAGGGCGAGTCGGCGGCCACTACGGCaa < 2:958543/150‑1 (MQ=255) cagaatgTGGCGGCCCGCCACATTCTGCTCCATCAGCAGGCGCACCGCCGAAGGGCGCTGCAGGGCCACGAAATCTTCGGCCATCAGCTGTGCCCAGCTGACCTGGGGCAGCAGTGCCAAGGGCGAGTCGGCGGCCACTACGGCAACGaa > 1:512804/7‑150 (MQ=255) ttGCCGTGGCGGGCCGCCACATTCTGCTCCATCAGCAGGCGCACCGCCGAAGGGCGCTGCAGGGCCACGAAATCTTCGGCCATCAGCTGTGCCCAGCTGACCTGGGGCAGCAGt < 2:966450/114‑1 (MQ=255) ttGCCGTGGCGGGCCGCCACATTCTGCTCCATCAGCAGGCGCACCGCCGAAGGGCGCTGCAGGGCCACGAAATCTTCGGCCATCAGCTGTGCCCAGCTGACCTGGGGCAGCAGt > 1:966450/1‑114 (MQ=255) gaatgTGGCGGCCCGCCACATTCTGCTCCATCAGCAGGCGCACCGCCGAAGGGCGCTGCAGGGCCACGAAATCTTCGGCCATCAGCTGTGCCCAGCTGACCTGGGGCAGTAGTGCCAAGGGCGAGTCGGCGGCCACTACGGCAACGAAGc > 2:950787/5‑150 (MQ=255) aatgTGGCGGCCCGCCACATTCTGCTCCATCAGCAGGCGCACCGCCGAAGGGCGCTGCAGGGCCACGAAATCTTCGGCCATCAGCTGTGCCCAGCTGACCTGGGGCAGCAGTGCCAAGGGCGAGTCGGCGGCCACTACGGCAACGAAGCg < 2:512804/147‑1 (MQ=255) gTGGCGGGCCGCCACATTCTGCTCCATCAGCAGGCGCACCGCCGAAGGGCGCTGCAGGGCCACGAAATCTTCGGCCATCAGCTGTGCCCAGCTGACCTGGGGCAGCAGTGCCAAGGGCGAGTCGGCGGCCACTACGGCAACGAAGCGGTc < 2:903989/150‑1 (MQ=255) ggggCCGCCACATTCTGCTCCATCGGCAGGCGCACCGCCGAAGGGCGCTGCAGGGCCACGAAATCTTCGGCCATCAGCTGTGCCCAGCTGACCTGGGGCAGCAGTGCCAAGGGCGAGTCGGCGGCCACTACGGCAACGAAGCGGTCCAtt < 2:1017993/149‑2 (MQ=255) | GACCAAGGTGACGCAGCGGGCACCCAGCTCCTGCATCTGGTTGATGCACAGGGCCGGCACGGCACTGACCCCCAGGCCGCTGGCCACCATGCGGCCGATGGTCGTCAGCTGGTGGCTTTCGAACGCGACTGCCAGCTTGCCGTGGCGGGCCGCCACATTCTGCTCCATCAGCAGGCGCACCGCCGAAGGGCGCTGCAGGGCCACGAAATCTTCGGCCATCAGCTGTGCCCAGCTGACCTGGGGCAGCAGTGCCAAGGGCGAGTCGGCGGCCACTACGGCAACGAAGCGGTCCATG > NC_002947/3532449‑3532743 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |